Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g009580.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.2e-19 97.4 50 100.0
HanXRQChr00c0214g0572641 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr13g0413721 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr13g0413871 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr15g0489701 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 1.2e-18 95.5 49 98.0
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BolC2t10586H Brassica oleracea HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BolSC29t60627H Brassica oleracea HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BolSC35t60718H Brassica oleracea HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BolSC37t60784H Brassica oleracea HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BolSC49t61156H Brassica oleracea HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
BraSC58t46449Z Brassica rapa HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
CAN.G1298.16 Capsicum annuum HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
CAN.G612.3 Capsicum annuum HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
CsaV3_UNG208970 Cucumis sativus L. HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
Gohir.A03G043250 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
Potri.013G139112 Populus trichocarpa HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
RcHm_v2.0_CPg0501741 Rosa chinensis HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
RcHm_v2.0_CPg0502671 Rosa chinensis HOM05D000729 ORTHO05D001063 3.6e-18 94.0 49 95.9
RcHm_v2.0_Chr5g0051091 Rosa chinensis HOM05D000729 ORTHO05D001063 4.6e-18 93.6 49 93.9
CAN.G1738.18 Capsicum annuum HOM05D000729 ORTHO05D001063 6.1e-18 93.2 49 93.9
Migut.F01470 Erythranthe guttata HOM05D000729 ORTHO05D001063 6.1e-18 93.2 49 95.9
Solyc09g061460.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 6.1e-18 93.2 49 95.9
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 7.9e-18 92.8 49 93.9
CSS0034759 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 7.9e-18 92.8 49 93.9
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 7.9e-18 92.8 49 95.9
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 7.9e-18 92.8 49 95.9
HanXRQChr13g0413651 Helianthus annuus HOM05D000729 ORTHO05D001063 7.9e-18 92.8 49 95.9
Thhalv10011731m.g Eutrema salsugineum HOM05D000729 ORTHO05D001063 1.0e-17 92.4 49 93.9
HanXRQChr09g0249681 Helianthus annuus HOM05D000729 ORTHO05D001063 1.0e-17 92.4 49 95.9
Gohir.A09G045500 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.4e-17 92.0 49 93.9
Eucgr.I01854 Eucalyptus grandis HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Gohir.A10G100333 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Sed0012918 Sechium edule HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund07988 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund08790 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund22780 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund27635 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund27858 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund27885 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund27951 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund28172 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund28540 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund28970 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund29048 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund29105 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund29118 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund29149 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Hund29155 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-17 91.7 49 93.9
Nn029s41588 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.3e-17 91.3 49 93.9
Nn031s41603 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.3e-17 91.3 49 93.9
Nn206s45069 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.3e-17 91.3 49 93.9
Nn219s45284 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.3e-17 91.3 49 93.9
Nn233s45561 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.3e-17 91.3 49 93.9
Nn269s46005 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.3e-17 91.3 49 93.9
Nitab4.5_0000729g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.0e-17 90.9 49 93.9
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 3.0e-17 90.9 49 91.8
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 3.0e-17 90.9 49 91.8
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 3.0e-17 90.9 49 91.8
BolSC56t61238H Brassica oleracea HOM05D000729 ORTHO05D001063 2.5e-16 87.8 47 91.5
Hund03965 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.5e-16 87.8 49 89.8
Solyc11g021120.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.3e-16 87.4 49 91.8
CAN.G1167.12 Capsicum annuum HOM05D000729 ORTHO05D001063 4.3e-16 87.0 49 91.8
CAN.G1185.9 Capsicum annuum HOM05D000729 ORTHO05D001063 7.4e-16 86.3 49 87.8
CAN.G398.11 Capsicum annuum HOM05D000729 ORTHO05D001063 7.4e-16 86.3 49 87.8
CAN.G30.9 Capsicum annuum HOM05D000729 ORTHO05D001063 1.7e-15 85.1 49 87.8
Gohir.D01G134200 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.8e-15 84.3 49 87.8
Peaxi162Scf00014g00287 Petunia axillaris HOM05D000729 ORTHO05D001063 1.1e-14 82.4 44 95.5
arahy.Tifrunner.gnm1.ann1.B0WG4N Arachis hypogaea HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 97.7
arahy.Tifrunner.gnm1.ann1.M13VEQ Arachis hypogaea HOM05D000729 ORTHO05D001063 1.8e-14 81.6 43 97.7
Nitab4.5_0004920g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.1e-14 80.5 44 93.2
Gohir.A05G306433 Gossypium hirsutum HOM05D000729 ORTHO05D001063 5.3e-14 80.1 43 95.3
arahy.Tifrunner.gnm1.ann1.6Q4XIG Arachis hypogaea HOM05D000729 ORTHO05D001063 6.9e-14 79.7 43 95.3
arahy.Tifrunner.gnm1.ann1.984MHU Arachis hypogaea HOM05D000729 ORTHO05D001063 6.9e-14 79.7 43 93.0
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.9e-14 79.7 43 93.0
arahy.Tifrunner.gnm1.ann1.E8A372 Arachis hypogaea HOM05D000729 ORTHO05D001063 9.1e-14 79.3 43 95.3
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 9.1e-14 79.3 45 88.9
Gohir.A05G307266 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.6e-13 77.8 43 93.0
Gohir.D01G101826 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.6e-13 77.8 43 93.0
Hund01554 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.3e-12 75.5 43 90.7
Nitab4.5_0003957g0020 Nicotiana tabacum HOM05D000729 ORTHO05D002596 1.1e-11 72.4 44 86.4
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 1.1e-11 72.4 35 94.3
CiPaw.03G002000 Carya illinoinensis HOM05D000729 ORTHO05D001063 2.5e-11 71.2 38 97.4
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 2.5e-11 71.2 43 86.0
arahy.Tifrunner.gnm1.ann1.NY619X Arachis hypogaea HOM05D000729 ORTHO05D001063 4.2e-11 70.5 43 90.7
Nitab4.5_0004929g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.2e-11 70.5 43 88.4
HanXRQChr00c0634g0576581 Helianthus annuus HOM05D000729 ORTHO05D001063 5.5e-11 70.1 33 100.0
Solyc02g011890.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 7.2e-11 69.7 49 73.5
Hund23965 Selenicereus undatus HOM05D000729 ORTHO05D001063 5.1e-09 63.5 44 77.3
Nitab4.5_0000684g0120 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.1e-08 62.4 43 76.7
Lsat_1_v5_gn_6_40860 Lactuca sativa HOM05D000729 ORTHO05D001063 3.3e-08 60.8 32 93.8
Medtr4g103280 Medicago truncatula HOM05D000729 ORTHO05D002596 3.3e-08 60.8 36 88.9
HanXRQChr00c0780g0577311 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
HanXRQChr16g0530791 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
Phvul.003G089802 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
Phvul.009G090272 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
SalBow6G4786 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-07 58.2 31 96.8
HanXRQChr00c0379g0574301 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-07 57.0 34 88.2
BraSC143t45669Z Brassica rapa HOM05D000729 ORTHO05D001063 6.3e-07 56.6 31 93.5
Gohir.A04G039450 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.3e-07 56.6 31 93.5
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.3e-07 56.6 31 93.5
Gohir.D02G152152 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.3e-07 56.6 31 93.5
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 6.3e-07 56.6 31 93.5
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 6.3e-07 56.6 31 93.5
Lalb_Chr07g0191631 Lupinus albus HOM05D000729 ORTHO05D001063 6.3e-07 56.6 31 93.5
Hund27921 Selenicereus undatus HOM05D000729 ORTHO05D001063 8.2e-07 56.2 32 90.6
HanXRQChr02g0059781 Helianthus annuus HOM05D000729 ORTHO05D001063 1.1e-06 55.8 34 85.3
Gohir.D08G147600 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.8e-06 55.1 31 87.1
Lalb_Chr07g0191591 Lupinus albus HOM05D000729 ORTHO05D001063 1.8e-06 55.1 30 96.7
Gohir.A09G093100 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-06 54.7 31 90.3
Sc20g0001970 Simmondsia chinensis HOM05D000680 ORTHO05D000738 7.0e-06 53.1 31 87.1


User provided reference genes

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