Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g009370.4 Solanum lycopersicum HOM05D001974 ORTHO05D001995 3.6e-79 298.1 145 100.0
Sopen06g004100 Solanum pennellii HOM05D001974 ORTHO05D001995 4.0e-62 241.5 123 94.3
PGSC0003DMG400034369 Solanum tuberosum HOM05D001974 ORTHO05D001995 1.1e-59 233.4 123 92.7
Nitab4.5_0000363g0070 Nicotiana tabacum HOM05D001974 ORTHO05D001995 5.8e-37 157.9 126 69.8
Peaxi162Scf00058g00206 Petunia axillaris HOM05D001974 ORTHO05D001995 6.4e-36 154.5 157 56.1
PGSC0003DMG400005339 Solanum tuberosum HOM05D001974 ORTHO05D001995 7.4e-32 141.0 82 86.6
CAN.G1449.1 Capsicum annuum HOM05D001974 ORTHO05D001995 1.8e-30 136.3 86 77.9
Solyc06g008620.1 Solanum lycopersicum HOM05D001974 ORTHO05D001995 6.9e-30 134.4 87 79.3
Sopen06g003390 Solanum pennellii HOM05D001974 ORTHO05D001995 6.9e-30 134.4 87 79.3
Nitab4.5_0003324g0120 Nicotiana tabacum HOM05D001974 ORTHO05D001995 1.2e-29 133.7 99 69.7
AUR62011735 Chenopodium quinoa HOM05D001974 ORTHO05D001995 4.8e-23 111.7 95 55.8
QL12p034323 Quercus lobata HOM05D001974 ORTHO05D001995 3.4e-21 105.5 116 50.0
CiPaw.07G123300 Carya illinoinensis HOM05D001974 ORTHO05D001995 5.8e-21 104.8 96 56.2
Ah.11g045770 Amaranthus hybridus HOM05D001974 ORTHO05D001995 7.6e-21 104.4 92 56.5
Ciclev10019102m.g Citrus clementina HOM05D001974 ORTHO05D001995 7.6e-21 104.4 78 66.7
AUR62024568 Chenopodium quinoa HOM05D001974 ORTHO05D001995 1.7e-20 103.2 99 50.5
TWI59G0571 Tripterygium wilfordii HOM05D001974 ORTHO05D001995 1.7e-20 103.2 78 57.7
Thecc.01G322300 Theobroma cacao HOM05D001974 ORTHO05D001995 2.2e-20 102.8 99 50.5
SGA_v2.0_scaffold80G25694 Striga asiatica HOM05D001974 ORTHO05D001995 2.9e-20 102.4 94 55.3
CSS0014853 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 1.4e-19 100.1 95 55.8
CSS0034750 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 1.4e-19 100.1 95 55.8
EL10As5g23581 Beta vulgaris HOM05D001974 ORTHO05D001995 2.5e-19 99.4 103 53.4
Haze_05115 Corylus avellana HOM05D001974 ORTHO05D001995 2.5e-19 99.4 127 46.5
CSS0004499 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 4.2e-19 98.6 96 53.1
Gorai.001G146700 Gossypium raimondii HOM05D001974 ORTHO05D001995 4.2e-19 98.6 101 50.5
Gohir.A07G130600 Gossypium hirsutum HOM05D001974 ORTHO05D001995 5.5e-19 98.2 103 50.5
PSO675G9146 Papaver somniferum HOM05D001974 ORTHO05D001995 9.3e-19 97.4 95 52.6
Gohir.D07G135000 Gossypium hirsutum HOM05D001974 ORTHO05D001995 1.2e-18 97.1 99 50.5
vmacro02371 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 1.2e-18 97.1 107 52.3
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 1.6e-18 96.7 99 51.5
Cc07_g15100 Coffea canephora HOM05D001974 ORTHO05D001995 2.1e-18 96.3 93 57.0
Duzib138G0137 Durio zibethinus HOM05D001974 ORTHO05D001995 2.1e-18 96.3 99 49.5
Cfa004877 Carpinus fangiana HOM05D001974 ORTHO05D001995 2.7e-18 95.9 75 62.7
COL.COLO4_23160 Corchorus olitorius HOM05D001974 ORTHO05D001995 3.5e-18 95.5 97 52.6
Nn3g21869 Nelumbo nucifera HOM05D001974 ORTHO05D001995 3.5e-18 95.5 78 59.0
Rhsim13G0001000 Rhododendron simsii HOM05D001974 ORTHO05D001995 3.5e-18 95.5 97 51.5
TAR636G2583 Trochodendron aralioides HOM05D001974 ORTHO05D001995 3.5e-18 95.5 78 57.7
FAN10G4124 Fragaria x ananassa HOM05D001974 ORTHO05D001995 4.6e-18 95.1 78 51.3
FAN28G2208 Fragaria x ananassa HOM05D001974 ORTHO05D001995 4.6e-18 95.1 78 53.8
COL.COLO4_23159 Corchorus olitorius HOM05D001974 ORTHO05D001995 6.0e-18 94.7 98 53.1
FAN26G2034 Fragaria x ananassa HOM05D001974 ORTHO05D001995 6.0e-18 94.7 78 52.6
PSO017G0481 Papaver somniferum HOM05D001974 ORTHO05D001995 6.0e-18 94.7 89 53.9
Aqoxy2G02566 Aquilegia oxysepala HOM05D001974 ORTHO05D001995 7.9e-18 94.4 73 61.6
RcHm_v2.0_Chr3g0486551 Rosa chinensis HOM05D001974 ORTHO05D001995 1.3e-17 93.6 92 54.3
Lj2C1212G6 Lonicera japonica HOM05D001974 ORTHO05D001995 1.8e-17 93.2 108 49.1
Manes.01G233000 Manihot esculenta HOM05D001974 ORTHO05D001995 1.8e-17 93.2 79 62.0
MBI19_g32710_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 2.3e-17 92.8 79 54.4
MSTRG.18067 Avicennia marina HOM05D001974 ORTHO05D001995 3.0e-17 92.4 94 52.1
Thhalv10029172m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 3.0e-17 92.4 97 48.5
Thhalv10029281m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 3.0e-17 92.4 97 48.5
Migut.D00029 Erythranthe guttata HOM05D001974 ORTHO05D001995 5.1e-17 91.7 95 48.4
Actinidia06389 Actinidia chinensis HOM05D001974 ORTHO05D001995 6.7e-17 91.3 95 48.4
Prupe.3G004400 Prunus persica HOM05D001974 ORTHO05D001995 6.7e-17 91.3 95 47.4
PGR083G1801 Punica granatum HOM05D001974 ORTHO05D001995 8.7e-17 90.9 75 56.0
SalBow6G3361 Salvia bowleyana HOM05D001974 ORTHO05D001995 1.1e-16 90.5 96 49.0
FvH4_1g26490 Fragaria vesca HOM05D001974 ORTHO05D001995 1.5e-16 90.1 78 50.0
Cfa004875 Carpinus fangiana HOM05D001974 ORTHO05D001995 1.9e-16 89.7 83 55.4
Psat6g045760 Pisum sativum HOM05D001974 ORTHO05D001995 1.9e-16 89.7 93 50.5
CiPaw.07G123200 Carya illinoinensis HOM05D001974 ORTHO05D001995 2.5e-16 89.4 75 58.7
Lj2g0018756 Lotus japonicus HOM05D001974 ORTHO05D001995 3.3e-16 89.0 78 51.3
MBI04_g36327_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 3.3e-16 89.0 72 56.9
BcaC01g06800 Brassica carinata HOM05D001974 ORTHO05D001995 4.3e-16 88.6 98 48.0
A03p31450 Brassica napus HOM05D001974 ORTHO05D001995 4.3e-16 88.6 98 48.0
C03p38400 Brassica napus HOM05D001974 ORTHO05D001995 4.3e-16 88.6 98 48.0
C03p38440 Brassica napus HOM05D001974 ORTHO05D001995 4.3e-16 88.6 98 48.0
BolC3t16118H Brassica oleracea HOM05D001974 ORTHO05D001995 4.3e-16 88.6 98 48.0
HanXRQChr09g0270411 Helianthus annuus HOM05D001974 ORTHO05D001995 5.7e-16 88.2 98 51.0
AL6G51430 Arabidopsis lyrata HOM05D001974 ORTHO05D001995 7.4e-16 87.8 98 48.0
Sp6g01710 Schrenkiella parvula HOM05D001974 ORTHO05D001995 7.4e-16 87.8 98 48.0
HanXRQChr15g0464331 Helianthus annuus HOM05D001974 ORTHO05D001995 9.7e-16 87.4 98 49.0
Medtr1g032010 Medicago truncatula HOM05D001974 ORTHO05D001995 9.7e-16 87.4 94 47.9
Medtr1g032340 Medicago truncatula HOM05D001974 ORTHO05D001995 9.7e-16 87.4 94 47.9
VMungo1215G1833 Vigna mungo HOM05D001974 ORTHO05D001995 9.7e-16 87.4 96 42.7
BraA03t12326Z Brassica rapa HOM05D001974 ORTHO05D001995 1.3e-15 87.0 98 46.9
CARHR249830 Cardamine hirsuta HOM05D001974 ORTHO05D001995 1.3e-15 87.0 99 46.5
DCAR_002929 Daucus carota HOM05D001974 ORTHO05D001995 1.3e-15 87.0 105 47.6
MBI15_g33465_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 1.3e-15 87.0 70 58.6
BcaB01g02384 Brassica carinata HOM05D001974 ORTHO05D001995 1.6e-15 86.7 98 46.9
ATR0796G130 Amborella trichopoda HOM05D001974 ORTHO05D001995 2.2e-15 86.3 74 54.1
ClCG09G004670 Citrullus lanatus HOM05D001974 ORTHO05D001995 2.2e-15 86.3 72 58.3
ATR0796G288 Amborella trichopoda HOM05D001974 ORTHO05D001995 2.8e-15 85.9 98 50.0
Glyma.07G168900 Glycine max HOM05D001974 ORTHO05D001995 2.8e-15 85.9 125 39.2
Ca_12550_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 3.7e-15 85.5 94 46.8
SalBow6G6290 Salvia bowleyana HOM05D001974 ORTHO05D001995 3.7e-15 85.5 89 49.4
AT4G01870 Arabidopsis thaliana HOM05D001974 ORTHO05D001995 6.3e-15 84.7 126 40.5
Sed0012789 Sechium edule HOM05D001974 ORTHO05D001995 6.3e-15 84.7 79 49.4
Medtr1g032300 Medicago truncatula HOM05D001974 ORTHO05D001995 1.1e-14 84.0 75 57.3
Phvul.003G019700 Phaseolus vulgaris HOM05D001974 ORTHO05D001995 1.1e-14 84.0 100 42.0
Carub.0006s3537 Capsella rubella HOM05D001974 ORTHO05D001995 1.8e-14 83.2 95 45.3
Dinv08793 Davidia involucrata HOM05D001974 ORTHO05D001995 1.8e-14 83.2 89 52.8
MELO3C023609.2 Cucumis melo HOM05D001974 ORTHO05D001995 2.4e-14 82.8 96 47.9
Lsat_1_v5_gn_9_7261 Lactuca sativa HOM05D001974 ORTHO05D001995 3.1e-14 82.4 72 56.9
MD17G1281200 Malus domestica HOM05D001974 ORTHO05D001995 3.1e-14 82.4 101 46.5
THA.LOC104801322 Tarenaya hassleriana HOM05D001974 ORTHO05D001995 4.1e-14 82.0 95 47.4
Lj2g0019143 Lotus japonicus HOM05D001974 ORTHO05D001995 9.0e-14 80.9 97 42.3
CsaV3_7G030440 Cucumis sativus L. HOM05D001974 ORTHO05D001995 1.2e-13 80.5 98 46.9
Lsat_1_v5_gn_1_59561 Lactuca sativa HOM05D001974 ORTHO05D001995 2.0e-13 79.7 72 54.2
Ca_12551_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 2.6e-13 79.3 109 41.3
Eucgr.L00886 Eucalyptus grandis HOM05D001974 ORTHO05D001995 3.4e-13 79.0 102 46.1
Sabra02G0166000 Salix brachista HOM05D001974 ORTHO05D001995 3.4e-13 79.0 100 43.0
unitig_578.g16639 Utricularia gibba HOM05D001974 ORTHO05D001995 4.5e-13 78.6 71 52.1
Eucgr.H00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 1.7e-12 76.6 102 46.1
ECA247G0945 Erigeron canadensis HOM05D001974 ORTHO05D001995 2.9e-12 75.9 77 51.9
Eucgr.H00884 Eucalyptus grandis HOM05D001974 ORTHO05D001995 2.9e-12 75.9 102 45.1
FAN19G0107 Fragaria x ananassa HOM05D001974 ORTHO05D001995 2.9e-12 75.9 64 51.6
Os07g0638100 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 2.9e-12 75.9 82 43.9
Eucgr.L00885 Eucalyptus grandis HOM05D001974 ORTHO05D001995 5.0e-12 75.1 103 44.7
Glyma.09G067650 Glycine max HOM05D001974 ORTHO05D001995 2.5e-11 72.8 87 41.4
Os03g0840200 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 1.6e-10 70.1 81 46.9
SEGI_38177 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 3.6e-10 68.9 109 42.2
Zm00001eb328760 Zea mays HOM05D001974 ORTHO05D001995 1.4e-09 67.0 84 42.9
SMO269G0006 Selaginella moellendorffii HOM05D001974 ORTHO05D001995 2.3e-09 66.2 75 42.7
Migut.C01055 Erythranthe guttata HOM05D001974 ORTHO05D001995 3.9e-09 65.5 82 40.2
ECA232G0613 Erigeron canadensis HOM05D001974 ORTHO05D001995 5.1e-09 65.1 100 42.0
Mapoly0073s0007 Marchantia polymorpha HOM05D001974 ORTHO05D001995 6.7e-09 64.7 111 37.8
Zm00001eb211030 Zea mays HOM05D001974 ORTHO05D001995 6.7e-09 64.7 72 45.8
Psat5g085400 Pisum sativum HOM05D001974 ORTHO05D001995 1.5e-08 63.5 90 42.2
Actinidia21357 Actinidia chinensis HOM05D001974 ORTHO05D001995 2.0e-08 63.2 60 50.0
Lsat_1_v5_gn_4_74321 Lactuca sativa HOM05D001974 ORTHO05D001995 2.0e-08 63.2 130 37.7
MBI03_g46670_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 3.3e-08 62.4 98 37.8
SEGI_21775 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 5.7e-08 61.6 70 41.4
SEGI_29807 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 5.7e-08 61.6 70 41.4
Lj1g0025233 Lotus japonicus HOM05D001974 ORTHO05D001995 9.7e-08 60.8 86 43.0
Actinidia15222 Actinidia chinensis HOM05D001974 ORTHO05D001995 1.3e-07 60.5 87 41.4
SHI23995 Sapria himalayana HOM05D001974 ORTHO05D001995 1.3e-07 60.5 60 51.7
VMungo1309G1905 Vigna mungo HOM05D001974 ORTHO05D001995 1.3e-07 60.5 77 40.3
SEGI_26948 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 2.2e-07 59.7 77 41.6
AUR62023728 Chenopodium quinoa HOM05D001974 ORTHO05D001995 2.8e-07 59.3 94 37.2
Glyma.06G116200 Glycine max HOM05D001974 ORTHO05D001995 2.8e-07 59.3 102 37.3
HPP92_025165 Vanilla planifolia HOM05D001974 ORTHO05D001995 2.8e-07 59.3 86 43.0
EL10Ac3g06152 Beta vulgaris HOM05D001974 ORTHO05D001995 3.7e-07 58.9 104 33.7
Lj7A346T30 Lonicera japonica HOM05D001974 ORTHO05D001995 3.7e-07 58.9 79 41.8
CSS0028375 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 6.3e-07 58.2 93 35.5
Medtr3g088425 Medicago truncatula HOM05D001974 ORTHO05D001995 6.3e-07 58.2 88 38.6
AL1G34830 Arabidopsis lyrata HOM05D001974 ORTHO05D001995 8.2e-07 57.8 89 33.7
AT1G21670 Arabidopsis thaliana HOM05D001974 ORTHO05D001995 8.2e-07 57.8 88 35.2
PSO528G0244 Papaver somniferum HOM05D001974 ORTHO05D001995 1.1e-06 57.4 116 34.5
Phvul.009G128300 Phaseolus vulgaris HOM05D001974 ORTHO05D001995 1.1e-06 57.4 84 35.7
SEGI_01346 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 1.1e-06 57.4 97 34.0
Mapoly0066s0120 Marchantia polymorpha HOM05D001974 ORTHO05D001995 1.4e-06 57.0 110 33.6
Peaxi162Scf00310g00420 Petunia axillaris HOM05D001974 ORTHO05D001995 1.4e-06 57.0 113 29.2
Ca_16598_v3 Cicer arietinum L. HOM05D001974 ORTHO05D001995 1.8e-06 56.6 76 39.5
HanXRQChr09g0260301 Helianthus annuus HOM05D001974 ORTHO05D001995 1.8e-06 56.6 94 38.3
BcaC05g26085 Brassica carinata HOM05D001974 ORTHO05D001995 2.4e-06 56.2 93 34.4
C05p20640 Brassica napus HOM05D001974 ORTHO05D001995 2.4e-06 56.2 93 34.4
BolC5t30763H Brassica oleracea HOM05D001974 ORTHO05D001995 2.4e-06 56.2 93 34.4
TPR.G13482 Trifolium pratense HOM05D001974 ORTHO05D001995 2.4e-06 56.2 86 40.7
Aa31LG7G5650 Aethionema arabicum HOM05D001974 ORTHO05D001995 3.1e-06 55.8 61 47.5
Solyc11g005080.1 Solanum lycopersicum HOM05D001974 ORTHO05D001995 3.1e-06 55.8 114 30.7
Sopen11g001080 Solanum pennellii HOM05D001974 ORTHO05D001995 3.1e-06 55.8 114 30.7
Cpa.g.sc64.135 Carica papaya HOM05D001974 ORTHO05D001995 5.3e-06 55.1 84 40.5
Gohir.A02G071800 Gossypium hirsutum HOM05D001974 ORTHO05D001995 5.3e-06 55.1 92 37.0
Rhsim12G0081400 Rhododendron simsii HOM05D001974 ORTHO05D001995 5.3e-06 55.1 116 33.6
TAR625G0879 Trochodendron aralioides HOM05D001974 ORTHO05D001995 5.3e-06 55.1 90 37.8
BraA06t24867Z Brassica rapa HOM05D001974 ORTHO05D001995 6.9e-06 54.7 93 33.3
CSS0009541 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 6.9e-06 54.7 64 43.8
Carub.0001s2110 Capsella rubella HOM05D001974 ORTHO05D001995 6.9e-06 54.7 60 43.3
CiPaw.15G033300 Carya illinoinensis HOM05D001974 ORTHO05D001995 6.9e-06 54.7 84 35.7
HanXRQChr09g0260321 Helianthus annuus HOM05D001974 ORTHO05D001995 6.9e-06 54.7 81 42.0
Prupe.1G491500 Prunus persica HOM05D001974 ORTHO05D001995 6.9e-06 54.7 77 36.4
SGA_v2.0_scaffold52G18932 Striga asiatica HOM05D001974 ORTHO05D001995 6.9e-06 54.7 82 36.6
Eucgr.F04330 Eucalyptus grandis HOM05D001974 ORTHO05D001995 9.1e-06 54.3 85 37.6
Sp1g19210 Schrenkiella parvula HOM05D001974 ORTHO05D001995 9.1e-06 54.3 85 32.9


User provided reference genes

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