Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g008420.2 Solanum lycopersicum HOM05D001794 ORTHO05D000492 7.8e-42 173.3 84 100.0
Solyc06g051140.4 Solanum lycopersicum HOM05D000397 ORTHO05D000492 1.9e-16 89.0 63 68.3
SalBow1G4162 Salvia bowleyana HOM05D001794 ORTHO05D007659 3.9e-09 64.7 46 67.4
AT5G14760 Arabidopsis thaliana HOM05D001794 ORTHO05D007659 5.1e-09 64.3 47 66.0
CARHR198550 Cardamine hirsuta HOM05D001794 ORTHO05D007659 5.1e-09 64.3 47 66.0
CAN.G1806.2 Capsicum annuum HOM05D001794 ORTHO05D007659 6.6e-09 63.9 42 71.4
Sopen12g007400 Solanum pennellii HOM05D001794 ORTHO05D007659 4.3e-08 61.2 42 69.0
MSTRG.3299 Avicennia marina HOM05D001794 ORTHO05D007659 9.6e-08 60.1 46 65.2
Cfa008568 Carpinus fangiana HOM05D001794 ORTHO05D007659 9.6e-08 60.1 43 67.4
Haze_14676 Corylus avellana HOM05D001794 ORTHO05D007659 9.6e-08 60.1 43 67.4
Dinv33489 Davidia involucrata HOM05D001794 ORTHO05D007659 9.6e-08 60.1 43 67.4
Duzib147G1267 Durio zibethinus HOM05D001794 ORTHO05D007659 9.6e-08 60.1 43 67.4
ECA246G1151 Erigeron canadensis HOM05D001794 ORTHO05D007659 9.6e-08 60.1 43 67.4
HanXRQChr15g0465291 Helianthus annuus HOM05D001794 ORTHO05D007659 9.6e-08 60.1 43 67.4
MD17G1034300 Malus domestica HOM05D001794 ORTHO05D007659 9.6e-08 60.1 43 67.4
SGA_v2.0_scaffold135G34872 Striga asiatica HOM05D001794 ORTHO05D007659 9.6e-08 60.1 46 65.2
AL6G25560 Arabidopsis lyrata HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
BcaB08g36949 Brassica carinata HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
A10p23920 Brassica napus HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
C09p62390 Brassica napus HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
BolC9t59077H Brassica oleracea HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
BraA10t44456Z Brassica rapa HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
CSS0045670 Camellia sinensis var. sinensis HOM05D001794 ORTHO05D007659 1.2e-07 59.7 43 67.4
Carub.0006s1293 Capsella rubella HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
CDE11G0332 Ceratophyllum demersum HOM05D001794 ORTHO05D130156 1.2e-07 59.7 70 45.7
Duzib264G1210 Durio zibethinus HOM05D001794 ORTHO05D007659 1.2e-07 59.7 43 67.4
Thhalv10015655m.g Eutrema salsugineum HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
Lsat_1_v5_gn_3_70920 Lactuca sativa HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 61.7
Lj7C592T2 Lonicera japonica HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
Sp6g29280 Schrenkiella parvula HOM05D001794 ORTHO05D007659 1.2e-07 59.7 47 63.8
THA.LOC104821074 Tarenaya hassleriana HOM05D001794 ORTHO05D007659 1.2e-07 59.7 42 64.3
Atru.chr6.2304 Acer truncatum HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Actinidia06021 Actinidia chinensis HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Actinidia36088 Actinidia chinensis HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Aa31LG11G14700 Aethionema arabicum HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
EL10Ac9g22931 Beta vulgaris HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
BcaC04g19011 Brassica carinata HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
CSS0005138 Camellia sinensis var. sinensis HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
CANSAT64G1634 Cannabis sativa HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Cpa.g.sc39.79 Carica papaya HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
CiPaw.04G025100 Carya illinoinensis HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
ClCG09G018960 Citrullus lanatus HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Cc07_g02190 Coffea canephora HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
COL.COLO4_28976 Corchorus olitorius HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
MELO3C021545.2 Cucumis melo HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
CsaV3_5G027390 Cucumis sativus L. HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
DCAR_021686 Daucus carota HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Dinv35068 Davidia involucrata HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Migut.H00116 Erythranthe guttata HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
FvH4_6g50750 Fragaria vesca HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
FAN02G0205 Fragaria x ananassa HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
FAN05G4092 Fragaria x ananassa HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
FAN09G1732 Fragaria x ananassa HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
FAN14G0059 Fragaria x ananassa HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Hma1.2p1_0993F.1_g245500 Hydrangea macrophylla HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Hma1.2p1_3249F.1_g334420 Hydrangea macrophylla HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
MD09G1032700 Malus domestica HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Nitab4.5_0003989g0020 Nicotiana tabacum HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Oeu062921.1 Olea europaea HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Peaxi162Scf00504g00091 Petunia axillaris HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Prupe.3G285300 Prunus persica HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
PGR142G3307 Punica granatum HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Rhsim10G0021600 Rhododendron simsii HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Hund02266 Selenicereus undatus HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Sc16g0003680 Simmondsia chinensis HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Thecc.04G009900 Theobroma cacao HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
TPR.G2266 Trifolium pratense HOM05D001794 ORTHO05D007659 1.6e-07 59.3 47 61.7
vmacro05829 Vaccinium macrocarpon HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
GSVIVG01032470001 Vitis vinifera HOM05D001794 ORTHO05D007659 1.6e-07 59.3 42 69.0
Aqoxy7G01736 Aquilegia oxysepala HOM05D001794 ORTHO05D007659 2.1e-07 58.9 43 65.1
arahy.Tifrunner.gnm1.ann1.SAS0DZ Arachis hypogaea HOM05D000150 ORTHO05D000108 2.1e-07 58.9 43 60.5
PSO063G6846 Papaver somniferum HOM05D001794 ORTHO05D007659 2.1e-07 58.9 43 65.1
PSO832G0053 Papaver somniferum HOM05D001794 ORTHO05D007659 2.1e-07 58.9 43 65.1
Lalb_Chr06g0176021 Lupinus albus HOM05D001794 ORTHO05D007659 2.8e-07 58.5 43 62.8
Ah.12g062210 Amaranthus hybridus HOM05D001794 ORTHO05D007659 3.6e-07 58.2 42 66.7
arahy.Tifrunner.gnm1.ann1.YVWU75 Arachis hypogaea HOM05D001794 ORTHO05D086187 3.6e-07 58.2 43 60.5
AUR62037090 Chenopodium quinoa HOM05D001794 ORTHO05D007659 3.6e-07 58.2 42 66.7
Eucgr.I01794 Eucalyptus grandis HOM05D001794 ORTHO05D007659 3.6e-07 58.2 42 66.7
Gohir.A07G220600 Gossypium hirsutum HOM05D001794 ORTHO05D007659 3.6e-07 58.2 42 66.7
Gohir.D07G227300 Gossypium hirsutum HOM05D001794 ORTHO05D007659 3.6e-07 58.2 42 66.7
Gorai.001G262200 Gossypium raimondii HOM05D001794 ORTHO05D007659 3.6e-07 58.2 42 66.7
Lj2g0026373 Lotus japonicus HOM05D001794 ORTHO05D007659 3.6e-07 58.2 47 59.6
ATR0730G204 Amborella trichopoda HOM05D001794 ORTHO05D007659 4.7e-07 57.8 49 59.2
QL02p076387 Quercus lobata HOM05D001794 ORTHO05D007659 4.7e-07 57.8 42 66.7
Sed0001215 Sechium edule HOM05D001794 ORTHO05D007659 4.7e-07 57.8 42 66.7
HPP92_003798 Vanilla planifolia HOM05D001794 ORTHO05D007659 4.7e-07 57.8 43 65.1
arahy.Tifrunner.gnm1.ann1.V2BCF1 Arachis hypogaea HOM05D001794 ORTHO05D007659 6.2e-07 57.4 43 62.8
CDE05G0064 Ceratophyllum demersum HOM05D001794 ORTHO05D007659 6.2e-07 57.4 42 66.7
MBI10_g09175_MAGBIO Magnolia biondii HOM05D001794 ORTHO05D007659 6.2e-07 57.4 43 62.8
Medtr6g007070 Medicago truncatula HOM05D001794 ORTHO05D007659 6.2e-07 57.4 43 62.8
Nn4g22777 Nelumbo nucifera HOM05D001794 ORTHO05D007659 6.2e-07 57.4 43 62.8
Potri.001G348600 Populus trichocarpa HOM05D001794 ORTHO05D007659 6.2e-07 57.4 42 66.7
Sabra16G0228200 Salix brachista HOM05D001794 ORTHO05D007659 6.2e-07 57.4 42 66.7
Sopen01g053720 Solanum pennellii HOM05D000397 ORTHO05D000492 6.2e-07 57.4 61 50.8
TAR629G2894 Trochodendron aralioides HOM05D001794 ORTHO05D007659 6.2e-07 57.4 43 62.8
Zm00001eb231540 Zea mays HOM05D001794 ORTHO05D007659 6.2e-07 57.4 47 59.6
Ca_04193_v3 Cicer arietinum L. HOM05D001794 ORTHO05D007659 8.1e-07 57.0 43 62.8
Glyma.05G007600 Glycine max HOM05D001794 ORTHO05D007659 8.1e-07 57.0 43 62.8
Phvul.004G013800 Phaseolus vulgaris HOM05D001794 ORTHO05D007659 8.1e-07 57.0 43 62.8
Psat1g057200 Pisum sativum HOM05D001794 ORTHO05D007659 8.1e-07 57.0 43 62.8
VMungo0464G0038 Vigna mungo HOM05D001794 ORTHO05D007659 8.1e-07 57.0 43 62.8
CAN.G588.88 Capsicum annuum HOM05D000397 ORTHO05D000492 1.1e-06 56.6 44 59.1
AUR62036486 Chenopodium quinoa HOM05D001794 ORTHO05D007659 1.1e-06 56.6 42 64.3
Os02g0134400 Oryza sativa ssp. japonica HOM05D001794 ORTHO05D007659 1.1e-06 56.6 47 59.6
RcHm_v2.0_Chr2g0171691 Rosa chinensis HOM05D001794 ORTHO05D007659 1.1e-06 56.6 42 64.3
Solyc12g014530.3 Solanum lycopersicum HOM05D001794 ORTHO05D007659 1.1e-06 56.6 42 66.7
PGSC0003DMG400012848 Solanum tuberosum HOM05D001794 ORTHO05D007659 1.1e-06 56.6 42 66.7
unitig_62.g23152 Utricularia gibba HOM05D001794 ORTHO05D007659 1.1e-06 56.6 42 64.3
CSS0049162 Camellia sinensis var. sinensis HOM05D001794 ORTHO05D007659 1.4e-06 56.2 42 66.7
Sc16g0003620 Simmondsia chinensis HOM05D001794 ORTHO05D023821 1.4e-06 56.2 41 68.3
arahy.Tifrunner.gnm1.ann1.L6XTUR Arachis hypogaea HOM05D001794 ORTHO05D007659 1.8e-06 55.8 43 60.5
Nitab4.5_0002338g0020 Nicotiana tabacum HOM05D001794 ORTHO05D007659 1.8e-06 55.8 42 66.7
TAR371G0305 Trochodendron aralioides HOM05D001794 ORTHO05D007659 1.8e-06 55.8 43 60.5
Solyc01g111680.4 Solanum lycopersicum HOM05D000397 ORTHO05D000492 2.4e-06 55.5 61 49.2
Ciclev10014558m.g Citrus clementina HOM05D001794 ORTHO05D007659 4.0e-06 54.7 42 64.3
TWI12G0896 Tripterygium wilfordii HOM05D001794 ORTHO05D007659 4.0e-06 54.7 42 64.3
TWI56G0328 Tripterygium wilfordii HOM05D001794 ORTHO05D007659 4.0e-06 54.7 42 64.3
Nitab4.5_0000283g0470 Nicotiana tabacum HOM05D000397 ORTHO05D000492 5.2e-06 54.3 61 47.5
Nitab4.5_0003914g0110 Nicotiana tabacum HOM05D000397 ORTHO05D000492 5.2e-06 54.3 61 47.5
Nitab4.5_0005830g0010 Nicotiana tabacum HOM05D001794 ORTHO05D007659 5.2e-06 54.3 42 64.3
SHI03735 Sapria himalayana HOM05D001794 ORTHO05D007659 5.2e-06 54.3 42 61.9
Cfa007423 Carpinus fangiana HOM05D001794 ORTHO05D007659 6.9e-06 53.9 43 58.1
Oeu043056.1 Olea europaea HOM05D007843 ORTHO05D003639 6.9e-06 53.9 46 58.7
PGSC0003DMG400006168 Solanum tuberosum HOM05D000397 ORTHO05D000492 6.9e-06 53.9 61 49.2
Mapoly0074s0055 Marchantia polymorpha HOM05D001794 ORTHO05D007659 9.0e-06 53.5 46 58.7
SEGI_30695 Sequoiadendron giganteum HOM05D001794 ORTHO05D007659 9.0e-06 53.5 43 60.5


User provided reference genes

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