Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.7e-157 559.3 292 100.0
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 9.0e-154 547.0 296 97.6
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.0e-128 463.8 297 84.5
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.8e-104 382.1 293 74.1
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 1.8e-98 363.2 299 67.2
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.7e-97 357.8 297 69.0
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.2e-96 356.3 297 68.7
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 2.1e-94 349.7 262 71.8
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 4.7e-94 348.6 296 67.2
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.8e-93 346.7 302 65.9
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-92 344.0 266 70.7
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.5e-92 343.6 298 65.1
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 9.8e-92 340.9 268 69.8
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 8.3e-91 337.8 230 77.4
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 2.4e-90 336.3 232 75.9
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 5.4e-90 335.1 220 78.2
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 9.1e-90 334.3 228 76.8
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.2e-89 334.0 221 78.3
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 2.0e-89 333.2 228 76.3
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.5e-89 332.4 229 76.4
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 4.5e-89 332.0 236 75.0
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.5e-89 332.0 232 75.9
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 7.7e-89 331.3 312 61.5
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.0e-88 330.9 232 73.7
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.3e-88 330.5 228 75.9
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.2e-88 329.7 230 74.3
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.9e-88 329.3 229 74.7
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 3.8e-88 328.9 221 77.4
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.8e-88 328.9 312 61.2
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.0e-88 328.6 228 74.6
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 6.5e-88 328.2 303 59.1
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 8.5e-88 327.8 319 59.6
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.5e-88 327.8 232 74.6
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.5e-88 327.8 232 74.6
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.5e-87 327.0 228 74.6
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.9e-87 326.6 231 74.9
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.2e-87 325.9 231 74.5
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 4.2e-87 325.5 258 68.2
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.2e-87 325.5 231 74.5
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 4.2e-87 325.5 228 76.3
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 5.5e-87 325.1 228 73.7
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 7.2e-87 324.7 224 76.3
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.6e-86 323.6 230 74.8
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 2.1e-86 323.2 233 73.0
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 3.6e-86 322.4 221 76.9
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 8.0e-86 321.2 223 76.7
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 8.0e-86 321.2 228 74.6
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 8.0e-86 321.2 246 69.1
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.0e-85 320.9 215 77.7
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.0e-85 320.9 222 75.2
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.4e-85 320.5 228 75.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.4e-85 320.5 229 72.9
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.8e-85 320.1 232 71.6
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.3e-85 319.7 223 73.5
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 3.0e-85 319.3 228 73.2
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 4.0e-85 318.9 221 76.0
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 5.2e-85 318.5 230 72.6
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.2e-85 318.5 229 72.5
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 6.8e-85 318.2 215 75.8
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 6.8e-85 318.2 228 72.8
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 8.8e-85 317.8 221 75.6
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 8.8e-85 317.8 233 72.1
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.2e-84 317.4 225 71.6
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.2e-84 317.4 310 59.7
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.5e-84 317.0 230 73.5
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.5e-84 317.0 221 74.7
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.5e-84 317.0 255 68.6
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.5e-84 317.0 233 71.7
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.5e-84 317.0 228 74.1
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.0e-84 316.6 269 66.2
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 2.6e-84 316.2 223 74.0
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 2.6e-84 316.2 223 74.0
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 3.4e-84 315.8 225 73.3
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.4e-84 315.8 224 72.8
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 5.7e-84 315.1 223 73.5
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 5.7e-84 315.1 223 73.5
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 9.8e-84 314.3 223 72.2
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 9.8e-84 314.3 221 75.1
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 9.8e-84 314.3 233 71.7
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.7e-83 313.5 278 63.7
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.2e-83 313.2 295 64.7
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 2.2e-83 313.2 227 70.9
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 2.8e-83 312.8 259 67.6
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.8e-83 312.8 220 74.5
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 3.7e-83 312.4 223 73.5
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 3.7e-83 312.4 225 72.9
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 3.7e-83 312.4 223 73.1
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 3.7e-83 312.4 223 72.6
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 6.3e-83 311.6 233 72.5
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 8.3e-83 311.2 233 70.8
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.1e-82 310.8 232 71.1
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.1e-82 310.8 269 63.6
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.4e-82 310.5 222 73.0
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.4e-82 310.5 237 69.6
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.8e-82 310.1 288 61.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 2.4e-82 309.7 232 71.1
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 4.1e-82 308.9 232 71.1
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 4.1e-82 308.9 232 71.1
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 4.1e-82 308.9 233 70.4
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.1e-82 308.9 299 62.5
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 7.0e-82 308.1 232 71.1
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 7.0e-82 308.1 271 63.5
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 9.2e-82 307.8 297 60.3
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.7e-81 306.2 225 71.1
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 4.5e-81 305.4 222 71.6
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 4.5e-81 305.4 235 69.4
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 5.9e-81 305.1 229 70.7
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 7.7e-81 304.7 224 74.1
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.3e-80 303.9 219 72.1
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-80 303.9 230 69.1
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.7e-80 303.5 225 73.8
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-80 303.5 230 69.1
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.7e-80 303.5 233 70.4
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.0e-80 302.0 230 68.7
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.7e-75 287.0 228 66.2
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.9e-75 286.2 228 65.8
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 4.9e-75 285.4 223 68.6
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.1e-74 284.3 222 67.6
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.4e-74 283.9 218 68.3
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-73 280.0 220 67.7
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 7.8e-73 278.1 228 66.7
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.7e-72 276.9 218 66.1
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 6.6e-72 275.0 229 62.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 7.3e-71 271.6 224 64.7
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.8e-69 266.9 177 75.1
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 5.2e-69 265.4 177 80.2
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.0e-65 253.4 222 64.0
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 3.3e-63 246.1 311 49.2
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 4.7e-62 242.3 183 73.8
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.1e-61 241.1 190 68.9
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 9.2e-58 228.0 256 50.8
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 9.2e-58 228.0 256 50.8
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-56 223.8 208 62.0
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.9e-56 222.6 165 73.3
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.1e-55 221.1 155 74.2
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 3.3e-55 219.5 161 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 9.5e-55 218.0 186 63.4
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-54 216.5 173 67.6
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-54 216.5 190 64.7
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 8.1e-54 214.9 183 65.6
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-52 210.3 220 56.8
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 9.9e-52 208.0 174 66.1
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 3.8e-51 206.1 184 60.9
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.2e-49 201.1 195 55.9
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.2e-46 191.0 185 56.2
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 9.9e-44 181.4 238 48.7
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.1e-39 167.9 161 57.1
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.4e-29 133.7 68 97.1
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 4.0e-29 132.9 242 37.2
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 6.4e-27 125.6 228 38.2
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 4.8e-22 109.4 207 36.7
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 8.4e-19 98.6 197 35.0
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 7.4e-15 85.5 235 30.6
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.1e-14 84.0 256 32.8
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-11 74.3 170 34.7
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.9e-10 70.9 41 75.6
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 5.5e-10 69.3 63 61.9
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.3e-08 63.9 46 71.7
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 3.0e-08 63.5 58 56.9
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.6e-06 57.8 41 65.9
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 8.2e-06 55.5 181 29.3


User provided reference genes

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