Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 1.5e-124 449.5 221 100.0
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 3.0e-117 425.2 213 98.6
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 8.1e-115 417.2 213 97.2
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 4.9e-96 354.8 221 81.9
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.9e-92 342.8 215 81.4
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.5e-92 342.4 221 78.3
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.9e-87 326.2 222 75.7
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 5.1e-85 318.2 206 79.1
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.9e-82 307.8 221 74.2
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 3.0e-77 292.4 221 69.2
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.7e-70 268.5 213 68.1
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 6.1e-70 268.1 220 65.9
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 1.7e-67 260.0 211 65.9
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 4.8e-67 258.5 169 72.2
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.1e-66 257.3 195 67.7
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 9.1e-66 254.2 213 63.8
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 9.1e-66 254.2 183 66.7
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 4.5e-65 251.9 161 75.8
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 1.3e-64 250.4 195 67.7
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.7e-64 250.0 207 63.8
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 1.7e-64 250.0 211 63.0
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.5e-63 246.1 164 73.8
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 4.2e-63 245.4 216 61.1
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.2e-62 243.8 162 72.2
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.2e-62 243.8 162 72.2
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 3.6e-62 242.3 164 73.2
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 3.6e-62 242.3 164 73.2
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.0e-61 240.7 162 71.6
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 1.0e-61 240.7 179 69.3
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 2.3e-61 239.6 157 74.5
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 3.0e-61 239.2 185 67.6
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 3.0e-61 239.2 164 72.6
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 4.0e-61 238.8 155 75.5
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 5.2e-61 238.4 171 67.3
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 6.7e-61 238.0 212 62.7
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 8.8e-61 237.7 210 62.4
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.5e-60 236.9 146 76.7
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.5e-60 236.9 164 71.3
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 2.6e-60 236.1 166 69.9
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 2.6e-60 236.1 192 63.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 3.3e-60 235.7 161 72.0
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 3.3e-60 235.7 149 77.2
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 4.4e-60 235.3 160 73.1
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 5.7e-60 235.0 216 63.0
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 5.7e-60 235.0 230 58.3
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 5.7e-60 235.0 183 65.6
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 7.5e-60 234.6 153 75.2
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 7.5e-60 234.6 154 72.7
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 9.7e-60 234.2 212 62.3
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.3e-59 233.8 157 71.3
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 2.8e-59 232.6 192 62.0
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 2.8e-59 232.6 171 69.6
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 2.8e-59 232.6 157 71.3
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 3.7e-59 232.3 178 67.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 3.7e-59 232.3 220 59.1
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 3.7e-59 232.3 225 58.7
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 6.3e-59 231.5 218 59.2
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 6.3e-59 231.5 156 72.4
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.1e-58 230.7 159 71.7
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.4e-58 230.3 178 66.9
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.4e-58 230.3 178 66.9
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.8e-58 229.9 197 62.4
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.8e-58 229.9 235 57.0
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 2.4e-58 229.6 167 70.1
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 2.4e-58 229.6 196 62.8
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 7.0e-58 228.0 203 62.6
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 7.0e-58 228.0 213 57.7
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 9.1e-58 227.6 219 61.2
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.6e-57 226.9 203 60.6
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.0e-57 226.5 184 62.5
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 2.7e-57 226.1 152 71.1
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 2.7e-57 226.1 143 74.8
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 3.5e-57 225.7 196 59.2
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 3.5e-57 225.7 211 59.2
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 5.9e-57 224.9 208 57.7
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 7.7e-57 224.6 129 81.4
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 7.7e-57 224.6 131 81.7
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 7.7e-57 224.6 138 76.8
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.0e-56 224.2 179 64.8
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 1.3e-56 223.8 153 71.9
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 1.7e-56 223.4 148 71.6
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 1.7e-56 223.4 217 57.6
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.7e-56 223.4 145 73.1
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 2.2e-56 223.0 160 68.1
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 3.8e-56 222.2 127 81.9
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 3.8e-56 222.2 156 68.6
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 3.8e-56 222.2 156 68.6
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 8.5e-56 221.1 202 57.9
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.5e-55 220.3 152 68.4
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.9e-55 219.9 152 68.4
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 2.5e-55 219.5 151 68.9
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 3.2e-55 219.2 151 68.9
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 3.2e-55 219.2 151 68.2
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 4.2e-55 218.8 189 60.8
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 4.2e-55 218.8 219 55.7
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 7.2e-55 218.0 151 68.2
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.2e-54 217.2 195 57.9
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 1.6e-54 216.9 151 68.2
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 1.6e-54 216.9 151 68.2
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 1.6e-54 216.9 151 68.2
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 2.1e-54 216.5 156 66.0
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 3.6e-54 215.7 190 58.9
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 8.0e-54 214.5 132 75.0
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.4e-53 213.8 151 67.5
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 2.3e-53 213.0 149 67.1
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 5.2e-53 211.8 132 73.5
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 5.2e-53 211.8 132 73.5
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.5e-52 210.3 124 79.0
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 9.8e-52 207.6 130 75.4
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 1.3e-51 207.2 164 65.2
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.2e-51 206.5 167 64.7
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.1e-47 194.1 131 66.4
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 1.6e-46 190.3 217 51.6
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 2.7e-46 189.5 196 55.6
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 1.4e-45 187.2 150 60.7
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 8.8e-45 184.5 152 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 3.7e-43 179.1 189 50.3
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.6e-41 173.7 141 57.4
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.6e-41 173.7 141 57.4
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.0e-40 171.0 143 56.6
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 5.2e-37 158.7 185 53.5
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 3.0e-32 142.9 102 73.5
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 8.0e-30 134.8 118 60.2
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 8.9e-29 131.3 80 76.2
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 2.0e-28 130.2 77 79.2
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.7e-25 119.8 132 48.5
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 8.1e-22 108.2 119 44.5
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 3.4e-20 102.8 62 72.6
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 3.4e-20 102.8 140 40.7
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 2.4e-18 96.7 61 68.9
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 9.2e-18 94.7 80 63.8
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 4.6e-17 92.4 49 85.7
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.3e-16 90.9 56 78.6
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 3.9e-16 89.4 58 75.9
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.9e-15 87.0 67 70.1
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.8e-13 80.5 102 45.1
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 4.6e-09 65.9 33 87.9
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 7.8e-09 65.1 46 60.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 7.3e-07 58.5 74 45.9
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 1.2e-06 57.8 52 61.5


User provided reference genes

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