Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 4.1e-142 508.4 335 100.0
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.3e-119 433.7 296 93.6
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.1e-110 401.0 300 88.0
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.4e-107 391.0 304 81.9
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 4.8e-103 378.6 295 76.6
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.7e-101 372.9 307 79.2
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 5.2e-97 358.6 303 82.5
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 5.9e-93 345.1 305 73.8
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 7.8e-93 344.7 299 73.2
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.7e-92 343.6 300 68.7
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.7e-92 343.6 298 73.2
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.0e-92 342.0 308 66.6
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 6.6e-92 341.7 299 68.6
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.8e-90 336.3 298 72.5
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.6e-88 329.7 284 70.8
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 5.7e-88 328.6 307 63.2
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.3e-87 327.4 290 71.0
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.7e-87 327.0 296 70.6
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.7e-87 327.0 295 73.2
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.7e-87 327.0 307 62.9
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 2.2e-87 326.6 308 65.3
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 2.9e-87 326.2 293 70.6
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.8e-86 323.6 308 62.3
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.4e-86 323.2 287 67.2
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.4e-86 323.2 287 67.2
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 5.4e-86 322.0 294 69.4
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 5.4e-86 322.0 300 69.0
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 9.2e-86 321.2 300 68.3
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.0e-85 320.1 290 65.9
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 5.9e-85 318.5 304 67.4
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.3e-84 317.4 300 66.3
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.3e-84 316.6 295 70.2
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.0e-84 316.2 310 65.5
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 5.0e-84 315.5 303 68.0
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 8.6e-84 314.7 308 62.7
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.9e-83 313.5 289 68.9
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.9e-83 313.5 314 62.4
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 7.3e-83 311.6 307 64.2
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 1.2e-82 310.8 298 66.4
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 4.7e-82 308.9 294 72.8
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.4e-81 307.4 298 68.5
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.4e-81 307.4 300 62.3
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.1e-81 306.2 308 58.4
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 3.1e-81 306.2 294 72.4
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.2e-81 305.4 285 66.7
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 8.9e-81 304.7 292 71.2
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 4.4e-80 302.4 314 67.2
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 4.4e-80 302.4 294 66.7
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.8e-80 301.2 311 65.9
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 9.8e-80 301.2 305 63.9
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.7e-79 300.4 314 62.7
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 2.9e-79 299.7 303 67.3
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.9e-79 299.7 298 60.4
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 8.3e-79 298.1 310 65.8
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.1e-78 297.7 291 68.7
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.1e-78 297.7 304 67.8
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-78 297.7 289 69.9
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-78 297.7 289 69.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.2e-78 296.2 302 69.2
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.2e-78 296.2 298 65.8
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 3.2e-78 296.2 291 69.4
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 9.2e-78 294.7 289 64.4
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 9.2e-78 294.7 310 64.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.6e-77 293.9 310 62.6
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 2.0e-77 293.5 304 65.8
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 4.6e-77 292.4 289 61.2
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.0e-76 291.2 288 61.8
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.7e-76 290.4 300 67.3
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 3.9e-76 289.3 312 65.7
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 3.9e-76 289.3 275 61.1
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 3.9e-76 289.3 301 66.8
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 8.6e-76 288.1 302 59.9
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 8.6e-76 288.1 308 68.5
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 8.6e-76 288.1 306 63.1
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.5e-75 287.3 298 65.1
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.3e-75 286.2 306 61.8
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 4.3e-75 285.8 309 66.7
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 5.6e-75 285.4 297 66.7
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 5.6e-75 285.4 298 67.1
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 5.6e-75 285.4 294 62.9
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 7.3e-75 285.0 298 62.8
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.6e-74 283.9 286 71.0
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 3.6e-74 282.7 290 66.9
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.1e-73 281.2 302 64.6
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.8e-73 280.4 291 63.9
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.3e-73 280.0 297 65.0
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 4.0e-73 279.3 303 67.7
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 5.2e-73 278.9 299 63.2
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 2.0e-72 276.9 297 65.7
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 5.8e-72 275.4 300 62.7
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 5.8e-72 275.4 314 64.6
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 9.9e-72 274.6 298 60.7
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.7e-71 273.9 295 60.7
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.7e-71 273.9 312 61.5
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.7e-71 273.9 308 65.6
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.7e-71 273.9 314 64.3
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.9e-71 273.1 307 61.6
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 2.9e-71 273.1 287 61.7
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 3.7e-71 272.7 298 66.1
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.7e-71 272.7 311 63.3
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 3.7e-71 272.7 305 63.6
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 8.3e-71 271.6 309 60.5
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.1e-70 271.2 308 60.7
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.9e-70 270.4 307 65.1
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 3.2e-70 269.6 301 57.8
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 3.2e-70 269.6 301 57.8
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 5.4e-70 268.9 289 65.1
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 7.1e-70 268.5 296 60.5
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 7.1e-70 268.5 305 60.3
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.3e-68 264.2 311 60.8
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.7e-68 263.8 287 65.2
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 3.0e-68 263.1 295 57.6
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 5.1e-68 262.3 306 62.7
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.1e-67 261.2 305 61.3
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 4.3e-67 259.2 322 60.6
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 5.6e-67 258.8 154 92.9
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 9.5e-67 258.1 311 65.6
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.2e-66 257.7 295 61.7
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.6e-66 257.3 289 59.9
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.1e-66 256.9 309 66.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 2.1e-66 256.9 344 57.0
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 6.2e-66 255.4 300 66.3
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.4e-65 253.4 288 64.6
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 6.8e-65 251.9 323 59.8
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 8.9e-65 251.5 312 63.5
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 2.0e-64 250.4 221 72.9
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 3.4e-64 249.6 299 58.2
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 3.9e-60 236.1 296 58.1
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 5.1e-60 235.7 295 54.6
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 8.7e-60 235.0 289 60.9
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.2e-58 231.1 295 58.6
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.4e-57 227.6 267 58.4
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 9.0e-57 224.9 211 67.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.5e-56 224.2 288 57.6
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 2.0e-56 223.8 406 45.8
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 7.6e-56 221.9 290 56.9
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 9.9e-56 221.5 293 53.2
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.8e-55 219.5 298 57.4
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 6.6e-52 208.8 296 54.4
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 7.3e-51 205.3 128 77.3
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.3e-51 205.3 295 53.6
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.6e-50 204.1 144 72.2
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 6.2e-50 202.2 296 54.7
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 8.1e-50 201.8 324 47.5
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.4e-49 201.1 296 53.0
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 8.4e-47 191.8 230 68.7
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.1e-45 187.2 246 60.2
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.0e-44 184.9 125 70.4
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 1.1e-43 181.4 147 63.3
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.3e-42 177.9 198 62.1
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.8e-41 174.1 279 48.4
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 9.3e-38 161.8 102 74.5
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.4e-33 147.9 121 75.2
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 4.2e-30 136.3 99 66.7
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.6e-29 134.4 294 44.2
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 7.9e-29 132.1 80 85.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.0e-28 131.7 330 46.7
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.8e-28 131.0 85 77.6
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 9.7e-27 125.2 317 44.2
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 9.7e-27 125.2 206 60.2
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 9.7e-27 125.2 330 44.2
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.3e-26 124.8 303 44.2
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.2e-26 124.0 209 54.1
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.6e-21 106.7 183 47.0
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 6.1e-21 105.9 80 68.8
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.9e-21 105.5 94 59.6
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.4e-20 104.8 118 57.6
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 3.3e-19 100.1 313 29.4
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 4.3e-19 99.8 109 51.4
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.2e-18 97.4 79 65.8
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.8e-18 97.1 73 68.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.1e-17 95.1 80 57.5
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.8e-17 94.4 78 62.8
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.1e-14 85.1 64 62.5
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.0e-12 77.0 45 84.4
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 2.6e-11 73.9 288 42.0
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.6e-11 73.9 89 49.4
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.3e-10 71.6 85 50.6
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.0e-08 64.3 79 50.6
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 4.5e-08 63.2 268 45.9
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 2.2e-07 60.8 80 45.0
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 3.2e-06 57.0 44 68.2


User provided reference genes

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