Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 1.6e-72 276.2 162 100.0
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 1.6e-72 276.2 162 100.0
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 2.4e-71 272.3 162 98.1
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.6e-64 249.6 162 79.0
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.8e-64 248.8 164 78.0
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.2e-62 243.4 165 76.4
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.2e-62 243.4 165 76.4
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 1.5e-62 243.0 162 76.5
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 5.8e-62 241.1 162 76.5
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.0e-61 240.4 162 75.9
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 1.4e-60 236.5 162 72.2
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 6.0e-59 231.1 162 72.8
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 6.0e-59 231.1 164 76.8
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 1.8e-58 229.6 162 72.8
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 3.0e-58 228.8 162 71.6
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 6.7e-58 227.6 165 70.9
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 2.5e-57 225.7 162 69.1
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 3.3e-57 225.3 161 71.4
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 5.7e-57 224.6 162 71.6
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 1.3e-56 223.4 162 71.0
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 1.6e-56 223.0 162 71.0
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 3.7e-56 221.9 121 86.8
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 6.3e-56 221.1 164 69.5
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 1.8e-55 219.5 162 70.4
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 2.4e-55 219.2 163 68.7
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 3.1e-55 218.8 121 86.0
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 4.1e-55 218.4 162 69.8
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 5.3e-55 218.0 162 69.8
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.2e-54 216.9 164 67.7
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 1.5e-54 216.5 162 68.5
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 1.5e-54 216.5 162 69.1
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 2.0e-54 216.1 121 86.0
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.0e-54 216.1 162 68.5
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 2.6e-54 215.7 121 86.0
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 2.6e-54 215.7 121 83.5
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 2.6e-54 215.7 162 66.7
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 2.6e-54 215.7 163 69.3
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 3.4e-54 215.3 121 85.1
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 7.6e-54 214.2 121 83.5
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 7.6e-54 214.2 121 83.5
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 7.6e-54 214.2 121 85.1
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.0e-53 213.8 162 67.3
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 1.7e-53 213.0 121 82.6
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 1.7e-53 213.0 121 82.6
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 1.7e-53 213.0 121 82.6
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 1.7e-53 213.0 121 82.6
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.7e-53 213.0 162 67.3
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 2.9e-53 212.2 161 67.1
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 2.9e-53 212.2 122 84.4
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 5.0e-53 211.5 121 81.0
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 5.0e-53 211.5 121 81.0
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 5.0e-53 211.5 164 64.6
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 5.0e-53 211.5 162 66.7
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 8.4e-53 210.7 121 81.0
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 8.4e-53 210.7 162 66.0
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 8.4e-53 210.7 121 81.8
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 1.4e-52 209.9 167 64.7
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 1.4e-52 209.9 121 82.6
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 1.9e-52 209.5 120 81.7
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 1.9e-52 209.5 121 83.5
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 2.5e-52 209.1 162 66.7
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 2.5e-52 209.1 162 65.4
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 3.2e-52 208.8 121 81.8
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 4.2e-52 208.4 122 81.1
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 7.2e-52 207.6 121 80.2
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 9.3e-52 207.2 166 72.9
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 9.3e-52 207.2 162 64.8
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 9.3e-52 207.2 159 69.8
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 1.2e-51 206.8 121 81.0
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 1.2e-51 206.8 160 68.8
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 1.6e-51 206.5 122 79.5
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 2.1e-51 206.1 163 63.8
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 2.1e-51 206.1 121 77.7
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 2.7e-51 205.7 162 64.8
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 3.5e-51 205.3 119 79.8
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 4.6e-51 204.9 162 63.6
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 4.6e-51 204.9 122 82.0
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 4.6e-51 204.9 121 77.7
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 6.1e-51 204.5 159 65.4
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 7.9e-51 204.1 159 65.4
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 1.3e-50 203.4 159 64.8
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 3.0e-50 202.2 118 79.7
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 3.9e-50 201.8 121 78.5
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 3.9e-50 201.8 160 68.8
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 8.7e-50 200.7 118 78.0
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 8.7e-50 200.7 159 63.5
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 1.1e-49 200.3 162 61.7
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 2.5e-49 199.1 118 78.0
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 2.5e-49 199.1 118 78.0
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 2.5e-49 199.1 162 64.2
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 3.3e-49 198.7 162 62.3
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 4.3e-49 198.4 121 73.6
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 4.3e-49 198.4 121 75.2
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 7.4e-49 197.6 162 63.0
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 7.4e-49 197.6 162 61.7
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 7.4e-49 197.6 162 61.7
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 7.4e-49 197.6 159 63.5
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 2.2e-48 196.1 122 77.0
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 2.4e-47 192.6 121 74.4
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 3.1e-47 192.2 154 63.6
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 3.1e-47 192.2 118 71.2
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 6.9e-47 191.0 119 76.5
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.2e-46 190.3 154 63.6
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 5.9e-46 188.0 154 63.0
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 1.1e-44 183.7 167 61.1
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 1.1e-44 183.7 106 81.1
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 9.4e-44 180.6 146 65.1
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 1.3e-40 170.2 107 75.7
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 1.4e-39 166.8 105 73.3
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 9.4e-36 154.1 91 79.1
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 6.7e-34 147.9 118 55.1
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 1.6e-30 136.7 118 53.4
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 3.5e-30 135.6 77 76.6
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 3.8e-29 132.1 84 75.0
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 2.3e-26 122.9 119 48.7
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 8.8e-26 120.9 69 82.6
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 2.6e-25 119.4 90 67.8
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 1.3e-24 117.1 90 66.7
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 9.8e-17 90.9 57 71.9
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 7.7e-14 81.3 48 77.1
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 1.7e-13 80.1 48 79.2
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 1.7e-13 80.1 118 39.0
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 2.2e-13 79.7 125 36.0
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 2.9e-13 79.3 170 40.6
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 5.2e-10 68.6 131 33.6


User provided reference genes

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