Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 1.8e-108 396.0 200 100.0
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 7.1e-102 374.0 200 93.0
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 1.2e-88 330.1 196 85.7
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 3.1e-73 278.9 196 76.5
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 9.7e-67 257.3 203 67.0
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 4.1e-65 251.9 203 66.0
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 3.8e-63 245.4 204 65.2
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 2.7e-61 239.2 206 62.6
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 6.1e-61 238.0 204 63.7
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 1.8e-60 236.5 201 62.7
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 2.3e-60 236.1 206 62.1
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 2.0e-59 233.0 204 59.8
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 2.0e-59 233.0 121 98.3
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 5.7e-59 231.5 213 62.0
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 2.2e-58 229.6 202 60.9
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 2.8e-58 229.2 215 59.1
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 2.8e-58 229.2 206 60.7
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 3.7e-58 228.8 201 61.2
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 6.3e-58 228.0 204 63.2
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 2.7e-56 222.6 189 59.8
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 3.5e-56 222.2 203 58.1
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 3.5e-56 222.2 202 59.4
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 3.5e-56 222.2 220 55.0
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 5.9e-56 221.5 210 57.6
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 1.0e-55 220.7 206 60.2
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 1.7e-55 219.9 196 59.7
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 1.7e-55 219.9 203 58.6
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 2.9e-55 219.2 188 59.6
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 3.8e-55 218.8 197 58.4
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 8.5e-55 217.6 205 60.0
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 3.2e-54 215.7 202 59.4
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 3.2e-54 215.7 202 56.9
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 9.4e-54 214.2 200 59.0
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 1.6e-53 213.4 199 58.3
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 1.6e-53 213.4 199 60.8
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 4.7e-53 211.8 201 58.2
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 4.7e-53 211.8 169 65.7
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 4.7e-53 211.8 197 57.4
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 6.1e-53 211.5 191 59.2
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 8.0e-53 211.1 196 56.6
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 8.0e-53 211.1 193 57.0
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 1.0e-52 210.7 194 60.3
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 1.4e-52 210.3 218 51.8
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 1.8e-52 209.9 201 55.7
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 3.0e-52 209.1 183 59.6
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 4.0e-52 208.8 177 62.1
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 4.0e-52 208.8 179 62.0
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 5.2e-52 208.4 207 55.6
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 5.2e-52 208.4 194 59.8
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 6.8e-52 208.0 179 61.5
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 6.8e-52 208.0 207 56.0
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 8.8e-52 207.6 193 59.1
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 8.8e-52 207.6 141 70.9
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 1.5e-51 206.8 203 58.1
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 2.0e-51 206.5 189 58.7
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 2.0e-51 206.5 206 55.3
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 2.6e-51 206.1 207 54.6
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 2.6e-51 206.1 198 57.1
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 2.6e-51 206.1 191 58.6
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 3.4e-51 205.7 160 64.4
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 4.4e-51 205.3 162 63.0
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 5.7e-51 204.9 179 60.9
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 5.7e-51 204.9 183 59.0
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 5.7e-51 204.9 181 60.2
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 2.2e-50 203.0 182 59.3
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 2.2e-50 203.0 205 57.1
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 2.2e-50 203.0 156 66.0
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 3.7e-50 202.2 201 54.2
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 6.3e-50 201.4 151 67.5
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 8.3e-50 201.1 186 58.1
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 8.3e-50 201.1 186 58.1
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 1.1e-49 200.7 191 57.6
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 2.4e-49 199.5 195 57.4
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 5.0e-47 191.8 195 54.9
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 5.0e-47 191.8 199 54.3
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 5.0e-47 191.8 195 54.9
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 3.3e-46 189.1 138 68.8
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 9.5e-46 187.6 231 47.2
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 2.1e-45 186.4 183 54.1
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 4.7e-45 185.3 195 55.4
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.4e-44 183.7 171 54.4
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 9.8e-43 177.6 169 56.2
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 1.7e-42 176.8 140 64.3
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 1.4e-41 173.7 160 56.9
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 7.0e-41 171.4 228 47.4
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 2.0e-40 169.9 116 62.9
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 2.7e-40 169.5 130 63.8
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.9e-39 166.0 229 45.9
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 8.6e-39 164.5 137 59.1
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 1.5e-38 163.7 151 54.3
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 5.6e-38 161.8 143 54.5
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 7.3e-38 161.4 141 55.3
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 7.3e-38 161.4 194 49.5
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 1.6e-37 160.2 140 60.7
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.0e-36 157.5 136 61.0
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 1.5e-35 153.7 282 37.6
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 3.2e-33 146.0 124 62.1
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 6.0e-32 141.7 99 74.7
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 2.1e-29 133.3 275 35.3
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 4.9e-26 122.1 120 51.7
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 7.8e-24 114.8 117 57.3
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 5.2e-20 102.1 164 40.9
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 2.0e-19 100.1 117 40.2
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 2.6e-19 99.8 101 50.5
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 5.8e-19 98.6 80 66.2
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.1e-17 94.4 208 35.1
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 3.2e-17 92.8 69 65.2
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 2.3e-15 86.7 84 57.1
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 4.4e-11 72.4 59 55.9
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 2.9e-10 69.7 115 38.3
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 7.1e-09 65.1 84 40.5
PSO675G0625 Papaver somniferum HOM05D002397 ORTHO05D002667 7.1e-09 65.1 139 30.9
PSO017G1677 Papaver somniferum HOM05D002397 ORTHO05D002667 9.2e-09 64.7 139 30.9
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 5.1e-07 58.9 105 33.3
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 1.1e-06 57.8 101 34.7
MD05G1250300 Malus domestica HOM05D002397 ORTHO05D002667 1.1e-06 57.8 101 33.7
AagrBONN_evm.TU.Sc2ySwM_228.4317 Anthoceros agrestis HOM05D002397 ORTHO05D002667 2.5e-06 56.6 104 32.7
Nitab4.5_0001288g0140 Nicotiana tabacum HOM05D002397 ORTHO05D002667 3.3e-06 56.2 118 32.2
Phvul.009G240300 Phaseolus vulgaris HOM05D002397 ORTHO05D002667 3.3e-06 56.2 128 28.9
C07p14570 Brassica napus HOM05D002397 ORTHO05D002667 4.3e-06 55.8 129 30.2
BolC7t41956H Brassica oleracea HOM05D002397 ORTHO05D002667 4.3e-06 55.8 129 30.2
PGR004G1811 Punica granatum HOM05D002397 ORTHO05D002667 4.3e-06 55.8 104 29.8
Carub.0001s2956 Capsella rubella HOM05D002397 ORTHO05D002667 5.6e-06 55.5 131 30.5
TPR.G38253 Trifolium pratense HOM05D002397 ORTHO05D002667 5.6e-06 55.5 129 30.2
A07p09470 Brassica napus HOM05D002397 ORTHO05D002667 7.3e-06 55.1 129 31.0
BraA07t28743Z Brassica rapa HOM05D002397 ORTHO05D002667 7.3e-06 55.1 129 31.0
CSS0046926 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 7.3e-06 55.1 101 32.7
Ca_18753_v3 Cicer arietinum L. HOM05D002397 ORTHO05D002667 7.3e-06 55.1 128 30.5
COL.COLO4_17651 Corchorus olitorius HOM05D002397 ORTHO05D002667 7.3e-06 55.1 101 33.7
Lj2A349T11 Lonicera japonica HOM05D002397 ORTHO05D002667 7.3e-06 55.1 101 32.7
Medtr4g084190 Medicago truncatula HOM05D002397 ORTHO05D002667 7.3e-06 55.1 136 30.1
Sp1g26980 Schrenkiella parvula HOM05D002397 ORTHO05D002667 7.3e-06 55.1 127 29.9
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 9.6e-06 54.7 101 32.7
Glyma.19G123100 Glycine max HOM05D002397 ORTHO05D002667 9.6e-06 54.7 102 33.3
Thecc.02G008600 Theobroma cacao HOM05D002397 ORTHO05D002667 9.6e-06 54.7 101 32.7
HPP92_004188 Vanilla planifolia HOM05D002397 ORTHO05D002667 9.6e-06 54.7 101 31.7


User provided reference genes

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