Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 4.0e-201 704.5 349 100.0
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 2.4e-185 652.1 321 99.1
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 5.8e-176 620.9 305 98.7
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 2.5e-163 578.9 315 86.3
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 2.8e-162 575.5 326 87.7
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 2.2e-159 565.8 314 85.4
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 6.5e-159 564.3 317 83.9
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 6.5e-159 564.3 314 84.4
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 2.5e-158 562.4 314 84.1
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 3.9e-156 555.1 312 82.1
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 6.7e-156 554.3 328 81.4
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 6.7e-156 554.3 314 83.8
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 8.8e-156 553.9 314 81.2
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 2.6e-155 552.4 318 81.4
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 2.6e-155 552.4 313 82.7
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 2.6e-155 552.4 313 83.4
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 4.4e-155 551.6 313 83.1
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 5.7e-155 551.2 314 81.8
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 7.4e-155 550.8 316 81.6
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 7.4e-155 550.8 314 82.2
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 2.2e-154 549.3 318 80.5
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 6.3e-154 547.7 314 81.5
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 8.2e-154 547.4 315 82.2
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 8.2e-154 547.4 314 80.9
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 1.8e-153 546.2 317 81.7
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.8e-153 546.2 318 82.1
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 2.4e-153 545.8 313 82.4
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 2.4e-153 545.8 321 80.4
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 3.1e-153 545.4 313 80.8
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 3.1e-153 545.4 314 78.7
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.1e-153 545.4 314 80.9
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 4.1e-153 545.0 314 82.2
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 5.3e-153 544.7 307 82.7
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 9.1e-153 543.9 314 80.3
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.2e-152 543.5 314 80.3
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 1.5e-152 543.1 314 80.9
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 1.5e-152 543.1 318 80.5
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.6e-152 542.3 318 80.2
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 4.5e-152 541.6 314 79.3
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.7e-151 539.7 320 79.4
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 2.2e-151 539.3 314 79.9
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 2.9e-151 538.9 318 81.4
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 3.8e-151 538.5 318 79.2
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 6.5e-151 537.7 315 80.3
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 6.5e-151 537.7 317 79.5
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 1.1e-150 537.0 313 80.8
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 1.4e-150 536.6 318 79.2
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.4e-150 536.6 273 94.5
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.4e-150 536.6 314 83.1
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 1.4e-150 536.6 332 76.8
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 1.9e-150 536.2 318 78.9
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 3.2e-150 535.4 314 79.6
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 4.2e-150 535.0 321 82.9
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 5.5e-150 534.6 307 81.1
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 5.5e-150 534.6 301 83.7
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 7.2e-150 534.3 321 77.9
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 1.2e-149 533.5 318 79.6
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 1.6e-149 533.1 311 80.4
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 2.1e-149 532.7 313 80.5
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 3.6e-149 531.9 320 78.1
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 3.6e-149 531.9 298 83.9
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 6.1e-149 531.2 320 79.1
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 3.0e-148 528.9 310 79.7
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 2.2e-146 522.7 302 82.1
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 2.2e-146 522.7 313 78.6
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 2.8e-146 522.3 298 81.2
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 8.2e-146 520.8 298 81.9
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.1e-145 520.4 297 80.8
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 1.2e-144 516.9 309 78.6
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.2e-144 516.9 298 81.5
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 2.0e-144 516.2 314 79.3
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 3.5e-144 515.4 309 78.6
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 3.5e-144 515.4 309 78.6
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 3.5e-144 515.4 302 80.1
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 7.7e-144 514.2 302 79.1
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.7e-143 513.1 308 78.2
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 2.5e-142 509.2 302 78.5
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.2e-142 508.4 316 76.3
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 4.2e-142 508.4 291 81.4
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 8.0e-141 504.2 317 77.3
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 5.2e-140 501.5 368 67.4
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.3e-138 496.9 296 80.1
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.0e-135 487.3 314 69.7
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 3.8e-135 485.3 302 75.5
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 6.5e-135 484.6 320 72.8
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 9.4e-134 480.7 313 70.3
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.7e-133 479.2 316 71.8
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 8.0e-133 477.6 277 85.9
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 1.8e-132 476.5 308 73.4
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.8e-129 466.5 306 79.1
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.4e-129 466.1 270 79.6
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.7e-128 462.6 262 80.9
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 3.5e-128 462.2 251 84.1
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.1e-126 457.2 262 80.5
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 2.5e-126 456.1 315 65.4
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 1.6e-125 453.4 254 83.9
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.0e-125 451.1 262 80.2
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 2.2e-122 443.0 308 66.9
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 4.1e-121 438.7 297 73.1
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 9.2e-121 437.6 285 73.0
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 7.5e-115 417.9 287 66.2
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 9.2e-113 411.0 258 76.4
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 9.5e-110 401.0 232 82.8
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 3.7e-106 389.0 218 81.7
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 4.1e-105 385.6 315 58.4
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 9.5e-102 374.4 305 58.7
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.4e-97 360.5 207 80.7
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.4e-92 344.0 306 54.6
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 7.3e-86 321.6 326 49.4
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.2e-80 304.3 204 67.6
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 4.3e-78 295.8 298 52.3
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.1e-76 291.2 288 47.9
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-76 291.2 179 74.9
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 4.9e-74 282.3 188 72.9
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 5.1e-71 272.3 172 77.3
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 3.7e-69 266.2 165 73.9
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 2.9e-66 256.5 145 81.4
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.3e-61 241.1 132 85.6
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 4.0e-60 236.1 186 62.4
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.6e-56 224.2 182 62.1
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 4.1e-52 209.5 134 73.9
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.2e-51 208.0 117 78.6
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.7e-50 204.1 114 81.6
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 3.9e-47 193.0 108 84.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 2.0e-43 180.6 124 71.0
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 2.6e-43 180.3 104 83.7
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 3.9e-39 166.4 118 66.1
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 2.2e-37 160.6 172 50.6
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.1e-36 158.3 107 68.2
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 7.2e-33 145.6 329 34.0
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.8e-31 138.7 106 64.2
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.7e-29 134.4 320 33.1
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 2.4e-28 130.6 95 70.5
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 8.8e-23 112.1 71 77.5
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.7e-21 106.7 123 50.4
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 1.3e-18 98.2 69 65.2
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 3.8e-18 96.7 69 65.2
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 5.5e-17 92.8 297 28.6
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.1e-16 90.9 95 51.6
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.8e-13 80.5 165 29.7
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 2.4e-12 77.4 42 78.6
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 2.4e-12 77.4 42 78.6
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 7.0e-12 75.9 55 61.8
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.2e-11 75.1 281 25.6
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 2.0e-11 74.3 40 80.0
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.7e-11 73.9 47 70.2
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 1.7e-10 71.2 80 52.5
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.8e-10 70.1 262 27.9
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.5e-09 68.2 321 26.8
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.5e-09 68.2 293 24.2
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.9e-09 67.8 292 26.4
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.5e-09 66.2 273 24.5
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 7.2e-09 65.9 276 25.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.6e-08 64.7 305 24.3
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 2.1e-08 64.3 295 25.8
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 3.6e-08 63.5 198 26.8
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.7e-08 63.2 273 24.5
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.7e-08 63.2 272 24.3
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.7e-08 63.2 272 24.3
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.1e-08 62.8 272 24.3
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 8.0e-08 62.4 195 27.7
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.0e-08 62.4 272 23.9
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.0e-08 62.4 272 23.9
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.0e-07 62.0 272 24.3
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.4e-07 61.6 327 25.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.3e-07 60.8 195 27.7
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.3e-07 60.8 121 33.1
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 4.0e-07 60.1 299 21.7
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 6.8e-07 59.3 297 23.9
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.2e-06 58.5 202 28.2
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.5e-06 58.2 204 25.0
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.5e-06 58.2 234 25.2
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.4e-06 57.0 120 33.3
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 4.4e-06 56.6 199 26.6
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 5.7e-06 56.2 51 43.1
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 9.8e-06 55.5 129 33.3


User provided reference genes

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