Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g005740.3 Solanum lycopersicum HOM05D000810 ORTHO05D001064 1.5e-71 272.7 131 100.0
FAN06G1800 Fragaria x ananassa HOM05D000810 ORTHO05D001064 3.4e-28 128.6 74 78.4
Sopen06g001720 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-28 128.3 65 93.8
Sabra10G0155100 Salix brachista HOM05D000810 ORTHO05D001064 1.3e-27 126.7 70 82.9
FAN06G0319 Fragaria x ananassa HOM05D000810 ORTHO05D001064 4.9e-27 124.8 70 80.0
Solyc06g005730.2 Solanum lycopersicum HOM05D000810 ORTHO05D001064 4.2e-26 121.7 74 78.4
Actinidia26730 Actinidia chinensis HOM05D000810 ORTHO05D001064 7.1e-26 120.9 70 78.6
arahy.Tifrunner.gnm1.ann1.M6FCCP Arachis hypogaea HOM05D000810 ORTHO05D001064 2.1e-25 119.4 70 75.7
Nitab4.5_0000004g0070 Nicotiana tabacum HOM05D000810 ORTHO05D001064 2.3e-24 115.9 64 79.7
DCAR_015634 Daucus carota HOM05D000810 ORTHO05D001064 5.1e-24 114.8 70 74.3
Hund26319 Selenicereus undatus HOM05D000810 ORTHO05D003737 2.5e-23 112.5 154 40.9
DCAR_018922 Daucus carota HOM05D000810 ORTHO05D001064 4.3e-23 111.7 70 71.4
Sopen06g001710 Solanum pennellii HOM05D000810 ORTHO05D001064 5.6e-23 111.3 69 78.3
MBI13_g31547_MAGBIO Magnolia biondii HOM05D000810 ORTHO05D003737 1.4e-21 106.7 163 38.7
Ah.08g217800 Amaranthus hybridus HOM05D000810 ORTHO05D003737 1.2e-20 103.6 113 46.0
AUR62001335 Chenopodium quinoa HOM05D000810 ORTHO05D003737 1.3e-19 100.1 82 53.7
C05p57820 Brassica napus HOM05D000810 ORTHO05D001064 1.7e-19 99.8 72 61.1
AUR62025670 Chenopodium quinoa HOM05D000810 ORTHO05D003737 1.7e-19 99.8 82 53.7
MBI10_g27925_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D000358 1.7e-19 99.8 68 63.2
Nitab4.5_0000751g0070 Nicotiana tabacum HOM05D000810 ORTHO05D001064 4.9e-19 98.2 70 58.6
Nitab4.5_0000819g0060 Nicotiana tabacum HOM05D000810 ORTHO05D001064 1.1e-18 97.1 70 58.6
Haze_21978 Corylus avellana HOM05D000810 ORTHO05D003737 2.5e-18 95.9 74 56.8
Cpa.g.c47951 Carica papaya HOM05D000810 ORTHO05D001064 9.3e-18 94.0 70 58.6
Oeu000810.1 Olea europaea HOM05D000810 ORTHO05D001064 6.0e-17 91.3 58 72.4
BcaC01g03573 Brassica carinata HOM05D000810 ORTHO05D003737 7.9e-17 90.9 70 54.3
Nn2g11178 Nelumbo nucifera HOM05D000810 ORTHO05D001064 1.8e-16 89.7 70 64.3
Sabra15G0049700 Salix brachista HOM05D000810 ORTHO05D003737 6.7e-16 87.8 70 54.3
Lsat_1_v5_gn_2_112881 Lactuca sativa HOM05D000810 ORTHO05D001064 2.1e-14 82.8 48 70.8
Os05g0327100 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D001064 3.7e-14 82.0 71 49.3
Nitab4.5_0005136g0020 Nicotiana tabacum HOM05D000810 ORTHO05D001064 6.9e-13 77.8 48 72.9
Atru.chr1.2646 Acer truncatum HOM05D000810 ORTHO05D003737 2.0e-12 76.3 121 38.8
Nitab4.5_0002810g0010 Nicotiana tabacum HOM05D000810 ORTHO05D001064 3.4e-12 75.5 63 58.7
Rhsim07G0145800 Rhododendron simsii HOM05D004747 ORTHO05D001064 2.2e-11 72.8 118 39.8
BcaNung06833 Brassica carinata HOM05D000810 ORTHO05D001064 6.5e-11 71.2 51 60.8
Cpa.g.sc95.30 Carica papaya HOM05D000810 ORTHO05D001064 6.5e-11 71.2 49 65.3
Aqoxy2G02074 Aquilegia oxysepala HOM05D000042 ORTHO05D001064 1.3e-08 63.5 38 71.1
Sc11g0007830 Simmondsia chinensis HOM05D000810 ORTHO05D001064 1.9e-07 59.7 32 78.1
Sed0024049 Sechium edule HOM05D000810 ORTHO05D001064 5.7e-07 58.2 29 86.2
TPR.G5638 Trifolium pratense HOM05D000810 ORTHO05D001064 5.7e-07 58.2 32 75.0
CSS0020268 Camellia sinensis var. sinensis HOM05D000810 ORTHO05D001064 1.3e-06 57.0 29 82.8
CSS0043240 Camellia sinensis var. sinensis HOM05D000810 ORTHO05D001064 1.3e-06 57.0 29 82.8
HanXRQChr08g0221001 Helianthus annuus HOM05D000810 ORTHO05D001064 2.2e-06 56.2 30 76.7
Medtr2g097670 Medicago truncatula HOM05D000810 ORTHO05D001064 2.8e-06 55.8 29 79.3
HanXRQChr08g0221131 Helianthus annuus HOM05D000810 ORTHO05D001064 3.7e-06 55.5 29 79.3
MD03G1087000 Malus domestica HOM05D000810 ORTHO05D001064 4.8e-06 55.1 29 79.3
Actinidia36890 Actinidia chinensis HOM05D000810 ORTHO05D001064 6.3e-06 54.7 71 47.9
ClCG00G004580 Citrullus lanatus HOM05D000810 ORTHO05D001064 6.3e-06 54.7 30 76.7
MELO3C025897.2 Cucumis melo HOM05D000810 ORTHO05D001064 6.3e-06 54.7 30 76.7
CsaV3_6G016670 Cucumis sativus L. HOM05D000810 ORTHO05D001064 6.3e-06 54.7 30 76.7
FvH4_3g36870 Fragaria vesca HOM05D000810 ORTHO05D001064 6.3e-06 54.7 29 79.3
FAN11G0426 Fragaria x ananassa HOM05D000810 ORTHO05D001064 6.3e-06 54.7 29 79.3
FAN21G2101 Fragaria x ananassa HOM05D000810 ORTHO05D001064 6.3e-06 54.7 29 79.3
FAN25G0317 Fragaria x ananassa HOM05D000810 ORTHO05D001064 6.3e-06 54.7 29 79.3
Lj8A573G8 Lonicera japonica HOM05D000810 ORTHO05D003737 6.3e-06 54.7 117 31.6
Medtr4g064670 Medicago truncatula HOM05D000810 ORTHO05D001064 6.3e-06 54.7 29 79.3
PGR102G0508 Punica granatum HOM05D000810 ORTHO05D001064 6.3e-06 54.7 29 79.3
RcHm_v2.0_Chr5g0066091 Rosa chinensis HOM05D000810 ORTHO05D001064 6.3e-06 54.7 29 79.3
DCAR_007433 Daucus carota HOM05D000810 ORTHO05D001064 8.2e-06 54.3 30 73.3
Dinv17035 Davidia involucrata HOM05D000810 ORTHO05D001064 8.2e-06 54.3 29 79.3
Dinv42981 Davidia involucrata HOM05D000810 ORTHO05D001064 8.2e-06 54.3 29 79.3
Dinv43118 Davidia involucrata HOM05D000810 ORTHO05D001064 8.2e-06 54.3 29 79.3
FAN16G2512 Fragaria x ananassa HOM05D000810 ORTHO05D001064 8.2e-06 54.3 30 76.7
Lalb_Chr04g0251081 Lupinus albus HOM05D000810 ORTHO05D001064 8.2e-06 54.3 29 79.3
MD11G1096100 Malus domestica HOM05D000810 ORTHO05D001064 8.2e-06 54.3 29 75.9
PGR142G0995 Punica granatum HOM05D000810 ORTHO05D001064 8.2e-06 54.3 29 79.3
Sabra09G0024900 Salix brachista HOM05D000810 ORTHO05D001064 8.2e-06 54.3 30 76.7


User provided reference genes

Program Settings