Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g005465.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.3e-32 141.7 77 100.0
Sopen06g001440 Solanum pennellii HOM05D002160 ORTHO05D002012 1.3e-27 125.9 77 89.6
CAN.G111.42 Capsicum annuum HOM05D002160 ORTHO05D002012 3.0e-24 114.8 77 80.5
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 8.7e-24 113.2 77 83.1
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 1.6e-22 109.0 78 80.8
Sopen06g032540 Solanum pennellii HOM05D002160 ORTHO05D002012 6.1e-17 90.5 78 73.1
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 1.5e-15 85.9 99 59.6
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 4.3e-15 84.3 78 71.8
Nitab4.5_0022803g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 1.3e-14 82.8 77 72.7
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 1.8e-13 79.0 80 70.0
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 1.8e-13 79.0 80 70.0
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 1.8e-13 79.0 80 70.0
CAN.G405.1 Capsicum annuum HOM05D002160 ORTHO05D002012 2.4e-13 78.6 78 69.2
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 4.1e-13 77.8 81 65.4
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 6.9e-13 77.0 78 61.5
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 6.9e-13 77.0 81 63.0
Nitab4.5_0003635g0040 Nicotiana tabacum HOM05D002160 ORTHO05D002012 6.9e-13 77.0 66 60.6
PGSC0003DMG400030321 Solanum tuberosum HOM05D002160 ORTHO05D002012 6.9e-13 77.0 78 69.2
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 9.1e-13 76.6 80 68.8
SalBow3G1981 Salvia bowleyana HOM05D002160 ORTHO05D002012 1.2e-12 76.3 52 71.2
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.5e-12 75.9 80 63.8
Solyc06g076140.4 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.6e-12 75.1 78 67.9
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 7.7e-12 73.6 80 50.0
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.0e-11 73.2 82 62.2
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.2e-11 72.0 79 60.8
Nitab4.5_0002557g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.9e-11 71.6 78 67.9
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.0e-11 70.9 79 54.4
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 6.5e-11 70.5 80 65.0
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 6.5e-11 70.5 80 47.5
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 8.5e-11 70.1 80 62.5
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 8.5e-11 70.1 80 65.0
Solyc04g058150.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.1e-10 69.7 78 67.9
Sopen04g025910 Solanum pennellii HOM05D002160 ORTHO05D002012 1.1e-10 69.7 78 64.1
Sopen04g026050 Solanum pennellii HOM05D002160 ORTHO05D002012 1.1e-10 69.7 78 67.9
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 1.4e-10 69.3 80 62.5
Solyc04g058100.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.4e-10 69.3 78 64.1
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.9e-10 68.9 77 61.0
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 1.9e-10 68.9 80 61.2
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 1.9e-10 68.9 81 64.2
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 1.9e-10 68.9 80 60.0
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 2.5e-10 68.6 81 65.4
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.5e-10 68.6 80 60.0
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.5e-10 68.6 79 63.3
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 3.2e-10 68.2 80 46.2
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 3.2e-10 68.2 80 46.2
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 3.2e-10 68.2 80 46.2
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 3.2e-10 68.2 80 46.2
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 3.2e-10 68.2 80 46.2
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 3.2e-10 68.2 80 46.2
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 3.2e-10 68.2 80 46.2
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 3.2e-10 68.2 80 61.2
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 3.2e-10 68.2 81 61.7
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 4.2e-10 67.8 77 59.7
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.2e-10 67.8 81 61.7
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.2e-10 67.8 80 57.5
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 4.2e-10 67.8 80 61.2
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 5.5e-10 67.4 81 61.7
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 5.5e-10 67.4 80 62.5
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 5.5e-10 67.4 81 64.2
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.2e-10 67.0 80 61.2
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 7.2e-10 67.0 80 58.8
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 9.4e-10 66.6 77 59.7
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 9.4e-10 66.6 119 44.5
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 9.4e-10 66.6 80 60.0
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 9.4e-10 66.6 79 58.2
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 9.4e-10 66.6 77 62.3
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.2e-09 66.2 83 50.6
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 1.2e-09 66.2 80 60.0
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.2e-09 66.2 81 59.3
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 1.6e-09 65.9 81 61.7
Oeu051437.1 Olea europaea HOM05D002160 ORTHO05D002012 1.6e-09 65.9 66 51.5
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.6e-09 65.9 81 60.5
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 2.1e-09 65.5 81 58.0
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.1e-09 65.5 83 49.4
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.1e-09 65.5 80 58.8
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 2.7e-09 65.1 81 58.0
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 2.7e-09 65.1 81 60.5
Os12g0567800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.7e-09 65.1 80 46.2
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.7e-09 65.1 83 50.6
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 2.7e-09 65.1 80 57.5
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.6e-09 64.7 81 59.3
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.6e-09 64.7 81 61.7
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 4.6e-09 64.3 80 46.2
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 4.6e-09 64.3 80 46.2
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 4.6e-09 64.3 80 57.5
Lsat_1_v5_gn_8_73001 Lactuca sativa HOM05D002160 ORTHO05D002012 4.6e-09 64.3 59 59.3
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 4.6e-09 64.3 81 59.3
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.6e-09 64.3 83 50.6
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 6.1e-09 63.9 81 64.2
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 6.1e-09 63.9 81 60.5
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 6.1e-09 63.9 81 60.5
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 6.1e-09 63.9 80 55.0
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 6.1e-09 63.9 81 56.8
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 6.1e-09 63.9 82 57.3
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 6.1e-09 63.9 80 60.0
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 6.1e-09 63.9 80 57.5
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 7.9e-09 63.5 81 59.3
ECA236G3652 Erigeron canadensis HOM05D002160 ORTHO05D002012 7.9e-09 63.5 82 58.5
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.9e-09 63.5 80 60.0
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.9e-09 63.5 80 60.0
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 1.0e-08 63.2 81 60.5
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 1.0e-08 63.2 81 59.3
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.0e-08 63.2 76 46.1
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.0e-08 63.2 81 56.8
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.0e-08 63.2 77 50.6
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.4e-08 62.8 81 58.0
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.4e-08 62.8 78 59.0
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.4e-08 62.8 81 59.3
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 1.4e-08 62.8 83 56.6
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 1.8e-08 62.4 81 60.5
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 1.8e-08 62.4 81 60.5
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.8e-08 62.4 80 57.5
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 1.8e-08 62.4 80 58.8
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 2.3e-08 62.0 81 59.3
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.3e-08 62.0 80 57.5
ATR0559G129 Amborella trichopoda HOM05D002160 ORTHO05D002012 3.0e-08 61.6 81 56.8
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 3.9e-08 61.2 79 62.0
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 3.9e-08 61.2 80 55.0
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 3.9e-08 61.2 81 53.1
Os12g0571000 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 3.9e-08 61.2 82 58.5
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 3.9e-08 61.2 81 59.3
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 5.1e-08 60.8 81 54.3
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 5.1e-08 60.8 80 52.5
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.1e-08 60.8 79 59.5
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 6.7e-08 60.5 80 45.0
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 6.7e-08 60.5 80 58.8
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 82 56.1
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 1.1e-07 59.7 80 58.8
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 1.1e-07 59.7 79 59.5
DCAR_018908 Daucus carota HOM05D002160 ORTHO05D002012 1.1e-07 59.7 80 56.2
Eucgr.K03136 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.1e-07 59.7 80 58.8
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 82 54.9
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 1.1e-07 59.7 82 54.9
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.1e-07 59.7 80 56.2
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.5e-07 59.3 80 47.5
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.5e-07 59.3 80 56.2
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 2.0e-07 58.9 80 56.2
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 2.0e-07 58.9 81 53.1
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 2.0e-07 58.9 82 54.9
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 2.6e-07 58.5 79 59.5
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.3e-07 58.2 84 53.6
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.3e-07 58.2 80 58.8
SEGI_32259 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 3.3e-07 58.2 80 58.8
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 3.3e-07 58.2 83 56.6
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 4.4e-07 57.8 83 54.2
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 4.4e-07 57.8 82 48.8
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 4.4e-07 57.8 82 53.7
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 4.4e-07 57.8 57 52.6
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.7e-07 57.4 76 56.6
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 5.7e-07 57.4 79 58.2
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 7.4e-07 57.0 82 41.5
CSS0020810 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.4e-07 57.0 66 60.6
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.4e-07 57.0 68 47.1
AUR62019082 Chenopodium quinoa HOM05D002160 ORTHO05D002012 7.4e-07 57.0 79 55.7
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 7.4e-07 57.0 64 50.0
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 7.4e-07 57.0 79 55.7
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 7.4e-07 57.0 83 49.4
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 9.7e-07 56.6 82 54.9
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.7e-07 56.6 79 57.0
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 9.7e-07 56.6 80 56.2
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.7e-06 55.8 82 57.3
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 80 56.2
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.2e-06 55.5 76 53.9
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.2e-06 55.5 76 53.9
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.8e-06 55.1 55 56.4
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 2.8e-06 55.1 54 57.4
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 2.8e-06 55.1 79 58.2
Os11g0704500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.8e-06 55.1 56 50.0
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 2.8e-06 55.1 81 51.9
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 2.8e-06 55.1 80 53.8
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 3.7e-06 54.7 79 57.0
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 3.7e-06 54.7 56 51.8
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.7e-06 54.7 76 55.3
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 4.8e-06 54.3 82 46.3
CSS0041171 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 6.3e-06 53.9 66 59.1
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 6.3e-06 53.9 83 43.4
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 6.3e-06 53.9 82 52.4
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 8.2e-06 53.5 77 48.1
Hund10660 Selenicereus undatus HOM05D002160 ORTHO05D002012 8.2e-06 53.5 56 44.6


User provided reference genes

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