Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 0.0e+00 1360.9 699 100.0
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 0.0e+00 1325.5 699 97.4
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 0.0e+00 1216.4 700 91.3
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.4e-277 959.5 701 73.6
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 9.6e-271 936.8 665 76.4
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.3e-270 936.4 701 72.8
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 3.5e-236 822.0 702 65.8
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 7.6e-151 538.5 705 48.4
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 6.5e-150 535.4 490 59.4
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.8e-144 517.3 743 43.9
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 9.0e-144 515.0 549 55.2
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 3.3e-138 496.5 676 47.2
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 1.4e-136 491.1 491 57.4
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 2.9e-134 483.4 821 41.8
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.1e-133 481.5 708 44.1
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 3.2e-133 479.9 507 53.8
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 2.1e-132 477.2 727 46.5
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 4.7e-132 476.1 518 53.5
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 5.1e-131 472.6 388 64.2
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 7.4e-130 468.8 565 48.8
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 1.3e-129 468.0 352 67.6
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 1.7e-129 467.6 719 43.9
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 2.8e-129 466.8 353 67.1
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 3.7e-129 466.5 754 42.2
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 5.3e-128 462.6 353 66.6
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.5e-127 461.1 459 55.8
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 2.0e-127 460.7 615 45.2
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 2.0e-127 460.7 349 67.0
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 3.5e-127 459.9 351 67.8
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 1.1e-125 454.9 341 68.9
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 3.9e-123 446.4 344 67.7
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 3.9e-123 446.4 407 59.0
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.1e-122 444.9 342 67.3
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 4.4e-122 443.0 341 66.9
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 4.8e-121 439.5 383 59.3
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 8.2e-121 438.7 656 42.1
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 3.5e-119 433.3 391 57.8
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 5.9e-119 432.6 336 67.0
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.0e-118 431.8 388 60.6
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.0e-118 431.8 388 60.6
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.2e-117 426.8 377 58.4
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 9.4e-117 425.2 377 57.8
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 1.6e-116 424.5 377 58.1
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 2.1e-116 424.1 587 44.5
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.1e-116 424.1 377 58.1
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 3.6e-116 423.3 344 62.2
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 4.7e-116 422.9 402 55.5
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 8.0e-116 422.2 351 61.8
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 8.0e-116 422.2 377 57.3
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.0e-115 421.8 342 64.6
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.4e-115 421.4 358 62.6
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 1.8e-115 421.0 644 43.9
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 2.3e-115 420.6 484 50.0
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 4.0e-115 419.9 353 61.5
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 6.7e-115 419.1 763 38.5
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.2e-114 418.3 707 39.9
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 3.3e-114 416.8 352 59.4
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 4.4e-114 416.4 484 49.6
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.7e-113 414.5 360 58.1
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 2.2e-113 414.1 484 51.4
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 2.8e-113 413.7 707 39.2
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 3.7e-113 413.3 551 44.1
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 1.1e-112 411.8 333 63.4
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 1.1e-112 411.8 725 39.9
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 3.5e-111 406.8 349 61.0
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 3.5e-111 406.8 349 59.3
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 3.8e-110 403.3 354 61.3
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 6.5e-110 402.5 342 59.9
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.1e-109 401.7 802 37.2
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.2e-108 398.3 718 39.3
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.2e-108 398.3 388 54.4
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.2e-108 398.3 367 56.4
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 1.2e-108 398.3 700 38.6
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 2.1e-108 397.5 343 58.3
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.1e-108 397.5 464 49.6
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 8.0e-108 395.6 365 56.2
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 1.8e-107 394.4 386 54.1
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 3.0e-107 393.7 584 42.8
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.6e-106 390.6 405 53.8
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 4.4e-106 389.8 405 53.6
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 4.4e-106 389.8 405 53.6
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 7.5e-106 389.0 552 43.5
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 7.5e-106 389.0 737 39.1
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 6.3e-105 386.0 768 37.2
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 4.1e-104 383.3 357 57.7
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 4.1e-104 383.3 723 37.8
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.6e-103 381.3 312 63.5
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 3.8e-102 376.7 437 48.5
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 5.0e-102 376.3 371 55.0
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 6.6e-102 375.9 768 38.0
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.5e-101 374.8 662 39.7
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.9e-101 374.4 342 57.9
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 9.5e-101 372.1 371 54.2
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 1.0e-99 368.6 586 41.3
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.8e-99 367.9 586 41.5
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 4.0e-99 366.7 587 41.7
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 1.2e-98 365.2 591 41.8
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 1.2e-98 365.2 591 41.8
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.5e-98 364.8 329 57.1
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 2.6e-98 364.0 591 41.8
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 3.4e-98 363.6 394 52.8
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 8.3e-97 359.0 326 57.1
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 1.2e-95 355.1 379 49.9
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 4.3e-93 346.7 378 48.9
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 3.7e-89 333.6 351 49.0
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 2.5e-85 320.9 351 48.1
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 8.6e-78 295.8 241 64.7
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 8.1e-76 289.3 205 70.2
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 4.6e-71 273.5 613 36.7
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.7e-65 255.0 267 48.7
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 5.4e-64 250.0 207 62.3
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 3.8e-57 227.3 343 35.6
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 4.2e-56 223.8 229 49.3
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 2.3e-54 218.0 307 43.3
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 3.8e-49 200.7 301 42.2
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 4.6e-47 193.7 465 32.5
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 9.6e-45 186.0 445 34.2
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.1e-36 158.3 113 66.4
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 8.2e-36 156.4 144 56.9
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 3.4e-34 151.0 143 55.9
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.0e-33 147.1 126 63.5
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 1.4e-27 129.0 164 43.3
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 3.1e-27 127.9 164 48.8
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 7.2e-24 116.7 128 44.5
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.2e-23 115.9 286 29.4
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 3.0e-22 111.3 86 62.8
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 2.0e-18 98.6 106 49.1
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 7.2e-16 90.1 249 27.3
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.2e-15 89.4 62 66.1
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 6.1e-15 87.0 86 55.8
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 1.3e-12 79.3 57 66.7
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 1.3e-12 79.3 57 66.7
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.5e-10 72.4 56 66.1


User provided reference genes

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