Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g005040.1 Solanum lycopersicum HOM05D000419 ORTHO05D043421 9.1e-47 189.9 96 100.0
Nitab4.5_0000472g0320 Nicotiana tabacum HOM05D000419 ORTHO05D001071 2.3e-21 105.5 95 69.5
Nitab4.5_0006023g0010 Nicotiana tabacum HOM05D000419 ORTHO05D001071 8.6e-21 103.6 94 69.1
CAN.G126.8 Capsicum annuum HOM05D000419 ORTHO05D001071 2.5e-20 102.1 96 68.8
Peaxi162Scf00057g00011 Petunia axillaris HOM05D000419 ORTHO05D001071 1.2e-19 99.8 96 66.7
PGSC0003DMG400020888 Solanum tuberosum HOM05D000419 ORTHO05D001071 1.2e-19 99.8 94 67.0
Sopen03g003620 Solanum pennellii HOM05D000419 ORTHO05D001071 4.7e-19 97.8 94 66.0
Solyc03g007690.1 Solanum lycopersicum HOM05D000419 ORTHO05D001071 6.2e-19 97.4 94 66.0
Ca_10710_v3 Cicer arietinum L. HOM05D000419 ORTHO05D001071 2.6e-17 92.0 90 62.2
Cfa016318 Carpinus fangiana HOM05D000419 ORTHO05D001071 4.4e-17 91.3 90 63.3
Haze_00072 Corylus avellana HOM05D000419 ORTHO05D001071 4.4e-17 91.3 90 63.3
Medtr1g099570 Medicago truncatula HOM05D000419 ORTHO05D001071 4.4e-17 91.3 90 62.2
EL10Ac3g05386 Beta vulgaris HOM05D000419 ORTHO05D001071 5.8e-17 90.9 90 63.3
Psat6g195440 Pisum sativum HOM05D000419 ORTHO05D001071 5.8e-17 90.9 90 61.1
Potri.015G027600 Populus trichocarpa HOM05D000419 ORTHO05D001071 9.9e-17 90.1 90 62.2
GSVIVG01028809001 Vitis vinifera HOM05D000419 ORTHO05D001071 9.9e-17 90.1 90 63.3
Cc00_g20000 Coffea canephora HOM05D000419 ORTHO05D001071 1.3e-16 89.7 86 64.0
Duzib084G1201 Durio zibethinus HOM05D000419 ORTHO05D001071 1.3e-16 89.7 89 61.8
TPR.G7763 Trifolium pratense HOM05D000419 ORTHO05D001071 1.3e-16 89.7 89 61.8
MSTRG.27072 Avicennia marina HOM05D000419 ORTHO05D001071 2.2e-16 89.0 95 60.0
Lalb_Chr02g0141291 Lupinus albus HOM05D000419 ORTHO05D001071 2.2e-16 89.0 90 63.3
COL.COLO4_30275 Corchorus olitorius HOM05D000419 ORTHO05D001071 3.7e-16 88.2 90 60.0
TAR375G0448 Trochodendron aralioides HOM05D000419 ORTHO05D001071 3.7e-16 88.2 92 62.0
Gohir.A11G224800 Gossypium hirsutum HOM05D000419 ORTHO05D001071 4.9e-16 87.8 90 60.0
Gorai.003G070300 Gossypium raimondii HOM05D000419 ORTHO05D001071 4.9e-16 87.8 90 60.0
Thecc.03G187000 Theobroma cacao HOM05D000419 ORTHO05D001071 4.9e-16 87.8 90 60.0
Lj5g0025284 Lotus japonicus HOM05D000419 ORTHO05D001071 6.4e-16 87.4 90 62.2
Manes.06G154000 Manihot esculenta HOM05D000419 ORTHO05D001071 8.3e-16 87.0 90 61.1
Duzib205G0134 Durio zibethinus HOM05D000419 ORTHO05D001071 1.1e-15 86.7 90 60.0
CiPaw.08G119000 Carya illinoinensis HOM05D000419 ORTHO05D001071 1.4e-15 86.3 89 61.8
AUR62021088 Chenopodium quinoa HOM05D000419 ORTHO05D001071 1.4e-15 86.3 105 55.2
Sabra15G0022900 Salix brachista HOM05D000419 ORTHO05D001071 1.4e-15 86.3 90 60.0
Atru.chr1.330 Acer truncatum HOM05D000419 ORTHO05D001071 1.9e-15 85.9 94 57.4
DCAR_010649 Daucus carota HOM05D000419 ORTHO05D001071 1.9e-15 85.9 90 62.2
FAN15G1406 Fragaria x ananassa HOM05D000419 ORTHO05D001071 2.4e-15 85.5 94 60.6
Eucgr.A02688 Eucalyptus grandis HOM05D000419 ORTHO05D001071 3.2e-15 85.1 90 58.9
Actinidia34168 Actinidia chinensis HOM05D000419 ORTHO05D001071 4.1e-15 84.7 90 60.0
AUR62031445 Chenopodium quinoa HOM05D000419 ORTHO05D001071 4.1e-15 84.7 105 55.2
RcHm_v2.0_Chr1g0378951 Rosa chinensis HOM05D000419 ORTHO05D001071 4.1e-15 84.7 94 60.6
FvH4_2g03830 Fragaria vesca HOM05D000419 ORTHO05D001071 5.4e-15 84.3 94 59.6
FAN24G2635 Fragaria x ananassa HOM05D000419 ORTHO05D001071 5.4e-15 84.3 94 59.6
FAN27G1911 Fragaria x ananassa HOM05D000419 ORTHO05D001071 5.4e-15 84.3 94 59.6
Oeu037145.1 Olea europaea HOM05D000419 ORTHO05D001071 7.1e-15 84.0 90 63.3
Prupe.2G303100 Prunus persica HOM05D000419 ORTHO05D001071 7.1e-15 84.0 90 62.2
QL09p012182 Quercus lobata HOM05D000419 ORTHO05D001071 7.1e-15 84.0 89 61.8
Ciclev10004505m.g Citrus clementina HOM05D000419 ORTHO05D001071 1.2e-14 83.2 89 58.4
Glyma.20G163500 Glycine max HOM05D000419 ORTHO05D001071 1.2e-14 83.2 91 58.2
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.2e-14 83.2 95 56.8
CANSAT54G1983 Cannabis sativa HOM05D000419 ORTHO05D001071 1.6e-14 82.8 94 56.4
Lj1P1008T33 Lonicera japonica HOM05D000419 ORTHO05D001071 2.1e-14 82.4 89 60.7
CSS0001149 Camellia sinensis var. sinensis HOM05D000419 ORTHO05D001071 2.7e-14 82.0 90 61.1
MD01G1210800 Malus domestica HOM05D000419 ORTHO05D001071 2.7e-14 82.0 88 61.4
TWI23G1016 Tripterygium wilfordii HOM05D000419 ORTHO05D001071 2.7e-14 82.0 90 58.9
Nn7g36723 Nelumbo nucifera HOM05D000419 ORTHO05D001071 3.5e-14 81.6 93 58.1
ClCG05G008520 Citrullus lanatus HOM05D000419 ORTHO05D001071 6.0e-14 80.9 86 61.6
Sed0005579 Sechium edule HOM05D000419 ORTHO05D001071 7.8e-14 80.5 90 58.9
TAR374G0872 Trochodendron aralioides HOM05D000419 ORTHO05D001071 1.0e-13 80.1 92 57.6
vmacro06603 Vaccinium macrocarpon HOM05D000419 ORTHO05D001071 2.3e-13 79.0 89 58.4
Cpa.g.sc3.5 Carica papaya HOM05D000419 ORTHO05D001071 3.0e-13 78.6 77 62.3
Lsat_1_v5_gn_8_6380 Lactuca sativa HOM05D000419 ORTHO05D001071 3.0e-13 78.6 77 66.2
PSO135G0194 Papaver somniferum HOM05D000419 ORTHO05D001071 3.0e-13 78.6 89 58.4
Actinidia08594 Actinidia chinensis HOM05D000419 ORTHO05D001071 3.9e-13 78.2 72 69.4
PSO384G3875 Papaver somniferum HOM05D000419 ORTHO05D001071 3.9e-13 78.2 90 56.7
MELO3C006947.2 Cucumis melo HOM05D000419 ORTHO05D001071 8.6e-13 77.0 90 56.7
MBI07_g11736_MAGBIO Magnolia biondii HOM05D000419 ORTHO05D001071 1.1e-12 76.6 90 55.6
CsaV3_3G017610 Cucumis sativus L. HOM05D000419 ORTHO05D001071 1.9e-12 75.9 90 55.6
Phvul.007G075700 Phaseolus vulgaris HOM05D000419 ORTHO05D001071 1.9e-12 75.9 90 57.8
VMungo0720G0767 Vigna mungo HOM05D000419 ORTHO05D001071 1.9e-12 75.9 90 56.7
Carub.0008s1302 Capsella rubella HOM05D000419 ORTHO05D001071 2.5e-12 75.5 89 51.7
HanXRQChr13g0392401 Helianthus annuus HOM05D000419 ORTHO05D001071 2.5e-12 75.5 77 62.3
Aqoxy7G00198 Aquilegia oxysepala HOM05D000419 ORTHO05D001071 3.3e-12 75.1 90 57.8
AL8G27310 Arabidopsis lyrata HOM05D000419 ORTHO05D001071 3.3e-12 75.1 89 51.7
CARHR265800 Cardamine hirsuta HOM05D000419 ORTHO05D001071 3.3e-12 75.1 89 51.7
Sp6g15020 Schrenkiella parvula HOM05D000419 ORTHO05D001071 3.3e-12 75.1 89 51.7
BcaC03g14493 Brassica carinata HOM05D000419 ORTHO05D001071 4.3e-12 74.7 89 51.7
A02p11570 Brassica napus HOM05D000419 ORTHO05D001071 4.3e-12 74.7 89 51.7
C02p19290 Brassica napus HOM05D000419 ORTHO05D001071 4.3e-12 74.7 89 51.7
BolC2t08065H Brassica oleracea HOM05D000419 ORTHO05D001071 4.3e-12 74.7 89 51.7
BraA02t06219Z Brassica rapa HOM05D000419 ORTHO05D001071 4.3e-12 74.7 89 51.7
Carub.0007s1521 Capsella rubella HOM05D000419 ORTHO05D001071 4.3e-12 74.7 86 54.7
BcaC09g50749 Brassica carinata HOM05D000419 ORTHO05D001071 5.6e-12 74.3 89 52.8
A01p16990 Brassica napus HOM05D000419 ORTHO05D001071 5.6e-12 74.3 89 52.8
C01p21310 Brassica napus HOM05D000419 ORTHO05D001071 5.6e-12 74.3 89 52.8
BolC1t02054H Brassica oleracea HOM05D000419 ORTHO05D001071 5.6e-12 74.3 89 52.8
BraA01t01655Z Brassica rapa HOM05D000419 ORTHO05D001071 5.6e-12 74.3 89 52.8
BcaB05g21987 Brassica carinata HOM05D000419 ORTHO05D001071 7.3e-12 73.9 89 51.7
BcaNung04117 Brassica carinata HOM05D000419 ORTHO05D001071 1.2e-11 73.2 89 51.7
CARHR233200 Cardamine hirsuta HOM05D000419 ORTHO05D001071 1.2e-11 73.2 86 53.5
CAN.G224.12 Capsicum annuum HOM05D000419 ORTHO05D043421 1.6e-11 72.8 70 64.3
Thhalv10013050m.g Eutrema salsugineum HOM05D000419 ORTHO05D001071 2.1e-11 72.4 89 50.6
AT5G52860 Arabidopsis thaliana HOM05D000419 ORTHO05D001071 2.8e-11 72.0 89 50.6
Aa31LG3G9100 Aethionema arabicum HOM05D000419 ORTHO05D001071 3.6e-11 71.6 92 50.0
THA.LOC104800279 Tarenaya hassleriana HOM05D000419 ORTHO05D001071 3.6e-11 71.6 89 51.7
AL7G27290 Arabidopsis lyrata HOM05D000419 ORTHO05D001071 6.2e-11 70.9 86 52.3
Thhalv10026876m.g Eutrema salsugineum HOM05D000419 ORTHO05D001071 6.2e-11 70.9 86 51.2
Sp7g23780 Schrenkiella parvula HOM05D000419 ORTHO05D001071 1.4e-10 69.7 89 50.6
THA.LOC104825118 Tarenaya hassleriana HOM05D000419 ORTHO05D001071 1.4e-10 69.7 89 50.6
PGR042G3949 Punica granatum HOM05D000419 ORTHO05D001071 3.1e-10 68.6 90 53.3
AT4G25750 Arabidopsis thaliana HOM05D000419 ORTHO05D001071 4.0e-10 68.2 77 55.8
ATR1131G055 Amborella trichopoda HOM05D000419 ORTHO05D001071 8.9e-10 67.0 90 50.0
Zm00001eb372940 Zea mays HOM05D000419 ORTHO05D001071 1.2e-09 66.6 90 52.2
HPP92_005258 Vanilla planifolia HOM05D000419 ORTHO05D001071 2.0e-09 65.9 95 51.6
CDE09G0509 Ceratophyllum demersum HOM05D000419 ORTHO05D001071 4.9e-08 61.2 72 56.9
Sc25g0000740 Simmondsia chinensis HOM05D000419 ORTHO05D001071 2.7e-06 55.5 77 50.6
Sed0010593 Sechium edule HOM05D000419 ORTHO05D001071 4.6e-06 54.7 77 50.6


User provided reference genes

Program Settings