Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g150139.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.1e-165 584.7 312 100.0
Solyc10g061845.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 8.3e-65 251.5 349 51.0
Sopen01g007850 Solanum pennellii HOM05D008041 ORTHO05D000385 9.2e-64 248.1 349 49.9
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 9.2e-64 248.1 349 49.9
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 9.2e-64 248.1 349 49.9
Sopen07g025660 Solanum pennellii HOM05D008041 ORTHO05D000385 9.2e-64 248.1 349 49.9
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 9.2e-64 248.1 349 49.9
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 4.6e-63 245.7 349 49.6
Sopen03g010950 Solanum pennellii HOM05D008041 ORTHO05D000385 6.0e-63 245.4 261 62.1
Sopen01g006470 Solanum pennellii HOM05D008041 ORTHO05D000385 1.6e-60 237.3 347 48.7
Sopen07g020910 Solanum pennellii HOM05D008041 ORTHO05D000385 2.0e-58 230.3 350 48.0
Sopen12g014810 Solanum pennellii HOM05D008041 ORTHO05D000385 6.0e-55 218.8 194 70.6
Sopen08g019920 Solanum pennellii HOM05D008041 ORTHO05D000385 3.4e-50 203.0 261 55.6
Sopen10g012240 Solanum pennellii HOM05D000107 ORTHO05D000385 3.4e-50 203.0 472 33.5
Solyc02g081085.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.9e-49 199.1 145 69.0
Sopen02g004250 Solanum pennellii HOM05D000004 ORTHO05D000385 1.2e-47 194.5 146 81.5
Solyc06g036805.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 6.2e-44 182.2 349 42.1
Solyc01g034040.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 5.1e-38 162.5 227 52.0
Solyc10g050065.1 Solanum lycopersicum HOM05D000107 ORTHO05D014265 4.9e-33 146.0 113 71.7
Sopen04g010730 Solanum pennellii HOM05D008041 ORTHO05D000385 7.9e-31 138.7 124 59.7
Solyc09g014641.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.5e-29 133.7 66 89.4
Solyc10g018713.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.1e-28 130.6 62 90.3
PGSC0003DMG400042404 Solanum tuberosum HOM05D000107 ORTHO05D014265 4.8e-28 129.4 113 61.1
Sopen01g006480 Solanum pennellii HOM05D000107 ORTHO05D000062 6.4e-25 119.0 293 33.1
Sopen09g017160 Solanum pennellii HOM05D000107 ORTHO05D014265 1.9e-24 117.5 61 96.7
PGSC0003DMG400034515 Solanum tuberosum HOM05D008041 ORTHO05D000385 2.4e-24 117.1 112 50.9
Sopen01g007430 Solanum pennellii HOM05D008041 ORTHO05D000385 7.1e-24 115.5 231 35.1
Sopen08g007140 Solanum pennellii HOM05D000107 ORTHO05D000570 2.1e-23 114.0 223 34.5
Sopen07g020900 Solanum pennellii HOM05D000107 ORTHO05D000062 3.5e-23 113.2 61 91.8
Sopen03g027010 Solanum pennellii HOM05D000107 ORTHO05D014265 4.6e-23 112.8 61 93.4
Sopen04g010740 Solanum pennellii HOM05D000107 ORTHO05D000062 4.6e-23 112.8 61 93.4
Sopen12g014820 Solanum pennellii HOM05D000107 ORTHO05D000062 6.0e-23 112.5 61 90.2
Sopen04g021200 Solanum pennellii HOM05D000004 ORTHO05D000002 7.9e-23 112.1 61 90.2
Sopen08g019930 Solanum pennellii HOM05D000107 ORTHO05D000062 7.9e-23 112.1 61 93.4
Sopen07g006310 Solanum pennellii HOM05D000107 ORTHO05D014265 6.7e-22 109.0 61 88.5
Sopen02g004240 Solanum pennellii HOM05D000107 ORTHO05D000062 9.6e-21 105.1 61 88.5
Sopen12g008090 Solanum pennellii HOM05D000107 ORTHO05D000385 1.3e-20 104.8 259 36.7
Solyc01g016416.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.1e-20 104.0 55 92.7
PGSC0003DMG400006058 Solanum tuberosum HOM05D008041 ORTHO05D000385 4.8e-20 102.8 80 63.8
Solyc08g016677.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.1e-19 101.7 129 41.9
Sc11g0005930 Simmondsia chinensis HOM05D010414 ORTHO05D000385 9.0e-19 98.6 130 36.2
Sopen11g015220 Solanum pennellii HOM05D000107 ORTHO05D014265 1.2e-18 98.2 62 82.3
Sopen12g015340 Solanum pennellii HOM05D008041 ORTHO05D000385 1.2e-18 98.2 129 48.1
PGSC0003DMG400043689 Solanum tuberosum HOM05D000107 ORTHO05D014265 1.3e-17 94.7 102 52.9
Solyc08g016563.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.2e-17 94.0 48 91.7
Solyc04g049110.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 3.8e-17 93.2 85 85.9
Solyc09g014642.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.1e-16 91.7 46 93.5
Sopen03g027000 Solanum pennellii HOM05D008041 ORTHO05D000385 2.5e-16 90.5 48 89.6
Solyc07g020915.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 3.2e-16 90.1 94 50.0
Solyc05g012827.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.1e-16 89.0 46 89.1
Solyc02g081087.1 Solanum lycopersicum HOM05D000107 ORTHO05D016691 3.5e-15 86.7 51 80.4
Solyc05g150110.1 Solanum lycopersicum HOM05D000107 ORTHO05D016691 3.5e-15 86.7 51 80.4
PGSC0003DMG400042507 Solanum tuberosum HOM05D007930 ORTHO05D007166 3.5e-15 86.7 110 39.1
Sopen01g010400 Solanum pennellii HOM05D008041 ORTHO05D000385 1.0e-14 85.1 85 75.3
Sopen01g029200 Solanum pennellii HOM05D008041 ORTHO05D000385 1.0e-14 85.1 76 57.9
Sc07g0004310 Simmondsia chinensis HOM05D010414 ORTHO05D000385 1.3e-14 84.7 111 34.2
Sopen06g014270 Solanum pennellii HOM05D000107 ORTHO05D014265 1.3e-14 84.7 49 87.8
Medtr5g061300 Medicago truncatula HOM05D004615 ORTHO05D000385 3.0e-14 83.6 138 30.4
Solyc12g017265.1 Solanum lycopersicum HOM05D000107 ORTHO05D000385 3.0e-14 83.6 125 40.0
Sopen03g014010 Solanum pennellii HOM05D000014 ORTHO05D000016 1.9e-13 80.9 110 38.2
Sopen08g013620 Solanum pennellii HOM05D008041 ORTHO05D000385 1.9e-13 80.9 74 52.7
PGSC0003DMG400043538 Solanum tuberosum HOM05D007930 ORTHO05D007166 1.9e-13 80.9 141 32.6
Sopen09g024560 Solanum pennellii HOM05D000107 ORTHO05D000062 2.5e-13 80.5 103 35.9
PGSC0003DMG400043540 Solanum tuberosum HOM05D000107 ORTHO05D014265 4.3e-13 79.7 60 63.3
EL10Ac7g17658 Beta vulgaris HOM05D004615 ORTHO05D000385 5.7e-13 79.3 106 35.8
Solyc11g020843.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 9.7e-13 78.6 62 48.4
Sopen11g019250 Solanum pennellii HOM05D000107 ORTHO05D014265 9.7e-13 78.6 59 64.4
Sc19g0006190 Simmondsia chinensis HOM05D010414 ORTHO05D000385 1.6e-12 77.8 101 35.6
Solyc10g039193.1 Solanum lycopersicum HOM05D000107 ORTHO05D016691 1.6e-12 77.8 51 70.6
Sopen09g017580 Solanum pennellii HOM05D000107 ORTHO05D014265 6.3e-12 75.9 59 61.0
Sopen10g014360 Solanum pennellii HOM05D007930 ORTHO05D007166 6.3e-12 75.9 141 34.0
PGSC0003DMG400043749 Solanum tuberosum HOM05D000107 ORTHO05D014265 6.3e-12 75.9 102 43.1
Sopen08g008350 Solanum pennellii HOM05D007930 ORTHO05D007166 3.1e-11 73.6 141 34.8
PGSC0003DMG400046364 Solanum tuberosum HOM05D007930 ORTHO05D007166 3.1e-11 73.6 103 37.9
Sopen10g011670 Solanum pennellii HOM05D000107 ORTHO05D014265 4.1e-11 73.2 59 59.3
Sopen01g007980 Solanum pennellii HOM05D007930 ORTHO05D007166 5.3e-11 72.8 141 34.8
CAN.G637.27 Capsicum annuum HOM05D000229 ORTHO05D000385 6.9e-11 72.4 129 34.1
Sopen10g011660 Solanum pennellii HOM05D000014 ORTHO05D000016 6.9e-11 72.4 77 44.2
PGSC0003DMG400001172 Solanum tuberosum HOM05D008041 ORTHO05D000385 9.0e-11 72.0 46 76.1
PGSC0003DMG400043070 Solanum tuberosum HOM05D030601 ORTHO05D000385 1.5e-10 71.2 86 39.5
Sopen12g015810 Solanum pennellii HOM05D007930 ORTHO05D007166 3.4e-10 70.1 109 33.9
PGSC0003DMG400046273 Solanum tuberosum HOM05D008041 ORTHO05D000385 4.5e-10 69.7 78 41.0
Atru.chr1.3691 Acer truncatum HOM05D005012 ORTHO05D005886 1.3e-09 68.2 123 32.5
Hund15079 Selenicereus undatus HOM05D020107 ORTHO05D000385 1.3e-09 68.2 139 30.2
Psat7g230640 Pisum sativum HOM05D008859 ORTHO05D007166 2.2e-09 67.4 136 30.1
PGSC0003DMG400046611 Solanum tuberosum HOM05D007930 ORTHO05D007166 2.2e-09 67.4 119 36.1
PGSC0003DMG400034488 Solanum tuberosum HOM05D008583 ORTHO05D014265 2.9e-09 67.0 59 57.6
EL10Ac6g14405 Beta vulgaris HOM05D004615 ORTHO05D000385 5.0e-09 66.2 150 29.3
AUR62042816 Chenopodium quinoa HOM05D010065 ORTHO05D000385 5.0e-09 66.2 109 33.9
Sopen05g025930 Solanum pennellii HOM05D007930 ORTHO05D007166 5.0e-09 66.2 152 27.6
Hund12189 Selenicereus undatus HOM05D004615 ORTHO05D000385 8.5e-09 65.5 127 32.3
Sopen12g018140 Solanum pennellii HOM05D007930 ORTHO05D007166 8.5e-09 65.5 172 29.7
AUR62014955 Chenopodium quinoa HOM05D008127 ORTHO05D000385 1.9e-08 64.3 101 36.6
Psat5g270240 Pisum sativum HOM05D008859 ORTHO05D007166 1.9e-08 64.3 132 29.5
Sopen09g016800 Solanum pennellii HOM05D000107 ORTHO05D000062 1.9e-08 64.3 66 50.0
EL10Ac2g03160 Beta vulgaris HOM05D004615 ORTHO05D000385 4.2e-08 63.2 155 28.4
AUR62013324 Chenopodium quinoa HOM05D010065 ORTHO05D000385 4.2e-08 63.2 109 33.0
AUR62019486 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.2e-08 63.2 57 43.9
Solyc05g032825.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.2e-08 63.2 28 92.9
EL10Ac1g01751 Beta vulgaris HOM05D004615 ORTHO05D000385 5.5e-08 62.8 151 26.5
Sc11g0003700 Simmondsia chinensis HOM05D010414 ORTHO05D000385 7.2e-08 62.4 82 34.1
Sopen03g016060 Solanum pennellii HOM05D008041 ORTHO05D000385 9.3e-08 62.0 47 61.7
EL10Ac1g01843 Beta vulgaris HOM05D009343 ORTHO05D011970 1.6e-07 61.2 100 34.0
EL10Ac1g02164 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-07 61.2 153 28.1
Solyc10g018790.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.1e-07 60.8 66 39.4
Sopen07g011270 Solanum pennellii HOM05D000107 ORTHO05D000385 2.1e-07 60.8 47 68.1
Sopen04g018890 Solanum pennellii HOM05D007930 ORTHO05D007166 2.7e-07 60.5 165 27.3
PGSC0003DMG400004241 Solanum tuberosum HOM05D007930 ORTHO05D007166 2.7e-07 60.5 129 34.1
AUR62035483 Chenopodium quinoa HOM05D004615 ORTHO05D000385 3.6e-07 60.1 101 31.7
Hund31150 Selenicereus undatus HOM05D004615 ORTHO05D000385 4.6e-07 59.7 55 43.6
Lj2g0010843 Lotus japonicus HOM05D004615 ORTHO05D000385 6.1e-07 59.3 52 46.2
AUR62042361 Chenopodium quinoa HOM05D004615 ORTHO05D000385 7.9e-07 58.9 55 43.6
AUR62042512 Chenopodium quinoa HOM05D014060 ORTHO05D000385 7.9e-07 58.9 52 44.2
AUR62043993 Chenopodium quinoa HOM05D000107 ORTHO05D000062 7.9e-07 58.9 66 42.4
AUR62043994 Chenopodium quinoa HOM05D000107 ORTHO05D000062 7.9e-07 58.9 66 42.4
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 7.9e-07 58.9 52 46.2
Sopen11g019240 Solanum pennellii HOM05D008041 ORTHO05D000385 7.9e-07 58.9 75 42.7
EL10Ac2g02989 Beta vulgaris HOM05D004615 ORTHO05D000385 1.3e-06 58.2 90 35.6
EL10Ac7g17625 Beta vulgaris HOM05D004615 ORTHO05D000385 1.3e-06 58.2 90 35.6
EL10Ac9g22619 Beta vulgaris HOM05D004615 ORTHO05D000385 1.3e-06 58.2 90 35.6
DCAR_010153 Daucus carota HOM05D024847 ORTHO05D000385 1.3e-06 58.2 78 39.7
AUR62031351 Chenopodium quinoa HOM05D014060 ORTHO05D000385 1.8e-06 57.8 45 48.9
DCAR_006099 Daucus carota HOM05D022224 ORTHO05D000385 1.8e-06 57.8 80 35.0
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 1.8e-06 57.8 62 37.1
Sopen07g008330 Solanum pennellii HOM05D007930 ORTHO05D007166 1.8e-06 57.8 164 27.4
EL10Ac3g06972 Beta vulgaris HOM05D010065 ORTHO05D000385 2.3e-06 57.4 135 28.9
AUR62024348 Chenopodium quinoa HOM05D014060 ORTHO05D000385 3.9e-06 56.6 44 50.0
Hund17768 Selenicereus undatus HOM05D006468 ORTHO05D006908 3.9e-06 56.6 110 28.2
Zm00001eb092990 Zea mays HOM05D008576 ORTHO05D000385 3.9e-06 56.6 101 30.7
DCAR_022238 Daucus carota HOM05D004615 ORTHO05D000385 5.1e-06 56.2 55 40.0
DCAR_029785 Daucus carota HOM05D004615 ORTHO05D000385 5.1e-06 56.2 55 40.0
DCAR_029877 Daucus carota HOM05D004615 ORTHO05D000385 5.1e-06 56.2 61 37.7
DCAR_031829 Daucus carota HOM05D024847 ORTHO05D000385 5.1e-06 56.2 77 40.3
ECA247G3403 Erigeron canadensis HOM05D008488 ORTHO05D000385 5.1e-06 56.2 110 28.2
Solyc11g042873.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 5.1e-06 56.2 42 61.9
EL10Ac6g14681 Beta vulgaris HOM05D010065 ORTHO05D000385 6.7e-06 55.8 135 28.1
Sopen04g011930 Solanum pennellii HOM05D007930 ORTHO05D007166 6.7e-06 55.8 61 39.3
TPR.G7595 Trifolium pratense HOM05D008859 ORTHO05D007166 6.7e-06 55.8 47 44.7
Hund03726 Selenicereus undatus HOM05D004615 ORTHO05D000385 8.7e-06 55.5 67 37.3
Sc11g0005200 Simmondsia chinensis HOM05D014970 ORTHO05D019369 8.7e-06 55.5 133 30.8
Sopen10g008660 Solanum pennellii HOM05D008041 ORTHO05D000385 8.7e-06 55.5 50 56.0
PGSC0003DMG400038814 Solanum tuberosum HOM05D004615 ORTHO05D000385 8.7e-06 55.5 64 35.9
PGSC0003DMG400042601 Solanum tuberosum HOM05D008041 ORTHO05D000385 8.7e-06 55.5 47 61.7


User provided reference genes

Program Settings