Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.0e-146 522.3 251 100.0
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.9e-11 73.9 37 97.3
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.2e-09 65.9 36 91.7
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.2e-08 64.7 51 64.7
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.2e-08 64.7 36 88.9
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.0e-08 63.9 37 86.5
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 3.4e-08 63.2 36 86.1
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 9.8e-08 61.6 35 88.6
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.7e-07 60.8 38 84.2
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.9e-07 60.1 36 83.3
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.9e-07 60.1 35 85.7
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 3.7e-07 59.7 58 62.1
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 3.7e-07 59.7 32 90.6
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 4.9e-07 59.3 39 76.9
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 6.4e-07 58.9 38 81.6
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 8.3e-07 58.5 38 81.6
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.1e-06 58.2 37 81.1
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.1e-06 58.2 38 81.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.1e-06 58.2 38 81.6
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.1e-06 58.2 38 81.6
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.4e-06 57.8 38 78.9
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.4e-06 57.8 38 78.9
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.4e-06 57.8 38 81.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.4e-06 57.8 34 85.3
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.9e-06 57.4 38 78.9
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.9e-06 57.4 40 75.0
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.9e-06 57.4 32 87.5
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.9e-06 57.4 31 90.3
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.4e-06 57.0 38 73.7
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.4e-06 57.0 38 78.9
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 2.4e-06 57.0 32 87.5
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 3.2e-06 56.6 36 83.3
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 3.2e-06 56.6 36 83.3
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 4.1e-06 56.2 59 54.2
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 5.4e-06 55.8 32 84.4
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 5.4e-06 55.8 41 70.7
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 5.4e-06 55.8 31 87.1
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 5.4e-06 55.8 32 84.4
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 5.4e-06 55.8 34 82.4
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.4e-06 55.8 32 84.4
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.4e-06 55.8 32 84.4
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 7.0e-06 55.5 39 71.8
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 7.0e-06 55.5 34 82.4
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 7.0e-06 55.5 31 87.1
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 9.2e-06 55.1 29 93.1
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 9.2e-06 55.1 29 93.1
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 9.2e-06 55.1 29 93.1
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 9.2e-06 55.1 29 93.1
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 9.2e-06 55.1 32 84.4


User provided reference genes

Program Settings