Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 3.4e-175 618.2 313 100.0
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.3e-171 606.3 313 98.1
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.2e-164 583.2 313 95.2
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 2.1e-156 555.8 311 92.0
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.8e-152 542.7 311 89.1
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.4e-152 542.3 313 89.5
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.7e-150 536.2 313 87.2
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.8e-136 489.6 295 84.1
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 7.4e-130 467.6 310 77.4
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 1.3e-129 466.8 280 83.2
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 5.3e-128 461.5 290 79.3
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 1.7e-126 456.4 292 78.4
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 5.0e-126 454.9 337 71.2
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 5.0e-126 454.9 337 71.2
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 8.5e-126 454.1 311 74.6
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.1e-125 453.8 273 81.0
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.1e-125 453.8 287 79.1
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.4e-125 453.4 281 80.4
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 3.2e-125 452.2 284 80.3
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.7e-124 449.1 282 78.7
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 3.6e-124 448.7 278 78.8
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 4.7e-124 448.4 270 83.3
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 4.7e-124 448.4 318 73.6
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 6.1e-124 448.0 281 79.4
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.8e-123 446.4 298 76.8
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 3.0e-123 445.7 286 76.9
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 3.0e-123 445.7 286 76.9
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 5.1e-123 444.9 271 79.7
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 8.8e-123 444.1 271 80.4
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.1e-122 443.7 287 77.7
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.1e-122 443.7 271 80.4
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.6e-122 442.6 270 81.9
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 3.3e-122 442.2 283 78.1
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 5.7e-122 441.4 281 78.6
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 7.4e-122 441.0 270 81.1
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 2.2e-121 439.5 291 76.3
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 3.7e-121 438.7 279 79.2
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 4.8e-121 438.3 279 77.8
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.4e-120 436.0 312 72.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 4.1e-120 435.3 279 77.4
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.1e-120 435.3 290 76.6
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 5.3e-120 434.9 311 71.7
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 9.1e-120 434.1 302 73.5
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.5e-119 433.3 271 78.2
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.0e-119 433.0 320 71.2
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 2.6e-119 432.6 304 72.0
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 3.4e-119 432.2 263 82.5
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 3.4e-119 432.2 274 78.8
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 5.9e-119 431.4 261 81.6
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 5.9e-119 431.4 280 78.6
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.3e-118 430.3 263 81.7
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.3e-118 430.3 290 74.8
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.2e-118 429.5 269 80.7
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 2.2e-118 429.5 267 77.2
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.2e-118 429.5 285 76.8
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 3.8e-118 428.7 276 77.5
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.8e-118 428.7 278 76.6
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.8e-118 428.7 274 78.5
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.8e-118 428.7 285 75.1
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 5.0e-118 428.3 275 77.8
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 6.5e-118 427.9 269 79.2
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 6.5e-118 427.9 277 78.3
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 6.5e-118 427.9 299 74.9
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 8.5e-118 427.6 284 76.4
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.1e-117 427.2 269 79.6
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.1e-117 427.2 266 80.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 4.2e-117 425.2 269 79.9
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 4.2e-117 425.2 267 76.8
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 7.2e-117 424.5 269 79.6
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.2e-116 423.7 301 72.1
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-116 423.7 267 78.7
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.2e-116 423.7 267 79.4
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.6e-116 423.3 285 75.8
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.6e-116 423.3 296 74.7
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 2.1e-116 422.9 270 76.7
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 4.7e-116 421.8 269 78.8
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 6.1e-116 421.4 330 66.1
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.8e-115 419.9 267 79.0
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.8e-115 419.9 268 78.7
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.8e-115 419.9 253 82.2
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.3e-115 419.5 265 78.9
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 3.0e-115 419.1 267 79.0
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 3.0e-115 419.1 267 79.0
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.9e-115 418.7 304 70.1
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.7e-115 417.9 310 69.0
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.6e-114 416.0 304 69.7
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.3e-114 415.6 301 68.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 5.7e-114 414.8 281 73.3
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 7.4e-114 414.5 270 77.4
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 3.5e-111 405.6 285 70.9
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.7e-110 403.3 261 78.2
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.7e-110 403.3 289 72.7
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 2.0e-106 389.8 273 72.2
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 9.7e-106 387.5 275 72.0
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.7e-105 386.7 350 60.3
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 4.8e-105 385.2 267 73.4
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 4.8e-105 385.2 233 80.7
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 1.4e-104 383.6 249 77.9
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-103 380.6 250 77.2
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.6e-103 380.2 269 72.1
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 5.0e-102 375.2 282 69.5
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 5.0e-102 375.2 234 79.5
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 2.5e-101 372.9 273 70.7
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.6e-100 369.0 283 65.7
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 4.0e-99 365.5 300 63.0
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.2e-98 364.0 282 66.7
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 5.7e-98 361.7 226 78.8
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.8e-97 358.6 262 69.5
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.8e-96 356.7 268 69.4
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 7.0e-96 354.8 256 69.9
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.6e-92 343.6 289 60.6
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 4.0e-91 339.0 251 70.9
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 1.2e-90 337.4 225 75.6
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 6.3e-89 331.6 285 61.8
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 7.0e-88 328.2 266 66.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.0e-86 324.3 282 58.5
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 6.6e-86 321.6 202 79.7
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 4.3e-85 318.9 263 60.5
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 4.7e-84 315.5 284 61.3
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 5.8e-82 308.5 246 67.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.9e-81 306.2 174 86.8
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.9e-80 303.5 242 66.5
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 5.0e-78 295.4 288 56.6
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 4.0e-75 285.8 171 81.9
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.9e-73 278.9 183 73.8
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.5e-69 267.3 183 70.5
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.7e-65 253.8 182 73.6
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 1.9e-64 250.4 154 79.2
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.1e-61 241.1 170 70.6
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 9.5e-61 238.0 183 68.3
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.4e-58 229.6 138 81.2
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.8e-57 226.1 260 46.5
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 2.4e-51 206.8 150 71.3
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 2.0e-50 203.8 168 65.5
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 4.9e-49 199.1 121 81.0
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 4.9e-49 199.1 121 81.0
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 4.2e-48 196.1 119 79.8
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.7e-47 193.4 119 79.0
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.5e-45 187.6 119 77.3
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.3e-38 164.5 108 74.1
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 2.3e-38 163.7 302 37.1
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.6e-37 159.1 139 59.7
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 4.8e-36 156.0 148 56.1
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 4.5e-34 149.4 125 54.4
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.7e-33 147.5 100 76.0
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 5.5e-32 142.5 173 46.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 9.3e-32 141.7 112 62.5
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.1e-29 134.8 97 66.0
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 3.3e-29 133.3 194 41.2
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.3e-28 131.3 115 62.6
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 4.0e-27 126.3 77 85.7
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 6.1e-23 112.5 91 65.9
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 3.0e-22 110.2 70 78.6
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 9.7e-21 105.1 71 71.8
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.8e-20 103.6 70 68.6
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.2e-15 88.2 55 76.4
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.2e-15 88.2 55 76.4
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 2.7e-15 87.0 197 36.5
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.6e-15 86.3 70 62.9
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 9.7e-13 78.6 46 80.4
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 2.3e-06 57.4 243 23.5
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 3.9e-06 56.6 34 70.6
SEGI_21930 Sequoiadendron giganteum HOM05D004449 ORTHO05D386504 6.7e-06 55.8 63 50.8


User provided reference genes

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