Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.4e-136 488.8 242 100.0
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 2.7e-135 485.3 242 99.2
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.6e-132 476.1 242 97.1
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 4.2e-125 451.4 242 93.4
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.1e-112 408.3 242 84.7
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 4.6e-103 378.3 231 81.0
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.7e-102 376.3 215 86.0
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 6.6e-102 374.4 242 77.7
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-100 369.8 242 77.7
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 3.5e-95 352.1 243 74.9
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.3e-94 350.1 242 72.7
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 2.3e-94 349.4 242 71.5
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 8.6e-94 347.4 244 74.6
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.5e-93 346.7 242 71.9
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.5e-93 346.7 242 71.9
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.5e-93 346.7 242 71.9
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.5e-93 346.7 219 79.0
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.5e-93 346.7 242 72.3
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 1.9e-93 346.3 242 72.7
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 7.3e-93 344.4 242 71.9
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.6e-92 343.2 250 71.2
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 2.1e-92 342.8 242 73.6
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 3.6e-92 342.0 243 70.8
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 6.2e-92 341.3 242 72.7
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 4.0e-91 338.6 248 71.8
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 2.0e-90 336.3 242 70.2
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.0e-90 336.3 243 70.8
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 2.0e-90 336.3 242 71.1
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 2.6e-90 335.9 242 69.8
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 4.4e-90 335.1 243 70.8
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.4e-90 335.1 243 70.8
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.4e-90 335.1 243 70.8
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 7.6e-90 334.3 242 70.7
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 7.6e-90 334.3 245 70.2
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.3e-89 333.6 243 70.0
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 3.8e-89 332.0 244 68.9
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.8e-89 332.0 246 68.7
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 4.9e-89 331.6 242 70.2
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 4.9e-89 331.6 211 77.7
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.4e-88 328.2 210 76.7
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 2.1e-87 326.2 243 71.2
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 4.6e-87 325.1 243 70.0
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 7.8e-87 324.3 242 69.8
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.3e-86 323.6 242 69.0
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.0e-86 322.4 244 68.4
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 8.7e-86 320.9 242 67.8
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.5e-85 320.1 203 78.3
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 2.5e-85 319.3 246 69.1
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.3e-84 317.0 240 69.6
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.3e-84 317.0 243 67.1
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 1.6e-84 316.6 244 68.4
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 2.1e-84 316.2 244 70.9
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 2.1e-84 316.2 242 67.8
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 3.6e-84 315.5 247 68.0
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 3.6e-84 315.5 243 66.7
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.8e-84 315.1 219 71.2
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 8.1e-84 314.3 243 65.8
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.4e-83 313.5 243 66.3
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 2.4e-83 312.8 252 65.9
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 2.4e-83 312.8 244 66.0
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.1e-83 312.4 245 67.8
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 4.0e-83 312.0 242 66.5
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 5.3e-83 311.6 219 72.6
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 6.9e-83 311.2 245 69.4
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.2e-82 310.5 242 65.7
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.2e-82 310.5 189 79.4
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.0e-82 309.7 255 64.3
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 7.6e-82 307.8 244 66.4
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 9.9e-82 307.4 245 69.0
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.3e-81 307.0 245 66.9
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.7e-81 306.6 243 67.5
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 1.7e-81 306.6 243 65.4
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 2.9e-81 305.8 246 65.9
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 3.8e-81 305.4 253 64.0
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 3.8e-81 305.4 202 73.3
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 8.4e-81 304.3 247 65.6
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 1.1e-80 303.9 244 64.8
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 1.1e-80 303.9 250 63.6
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.9e-80 303.1 249 63.5
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.9e-80 303.1 195 76.9
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 2.4e-80 302.8 247 66.0
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 4.2e-80 302.0 246 63.4
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 5.4e-80 301.6 246 65.0
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 5.4e-80 301.6 231 69.3
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 7.1e-80 301.2 246 64.2
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.2e-79 300.4 242 63.2
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 2.7e-79 299.3 244 66.8
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 2.7e-79 299.3 222 68.9
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 3.5e-79 298.9 242 66.5
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 3.9e-78 295.4 252 63.9
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 5.1e-78 295.0 218 68.3
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.1e-77 293.9 193 75.1
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.9e-77 293.1 253 61.3
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 2.5e-77 292.7 207 68.1
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 3.3e-77 292.4 244 62.7
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 3.3e-77 292.4 244 62.7
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 4.3e-77 292.0 189 76.7
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 5.6e-77 291.6 251 61.0
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 7.3e-77 291.2 247 62.8
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 9.6e-77 290.8 249 63.5
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 9.6e-77 290.8 253 62.5
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 8.1e-76 287.7 251 60.6
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.6e-74 282.7 193 73.6
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 4.5e-74 282.0 200 71.5
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.8e-74 281.6 195 71.8
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.7e-73 280.0 193 72.0
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 6.4e-73 278.1 257 59.1
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.1e-72 277.3 217 65.0
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 2.1e-71 273.1 220 65.0
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 1.8e-70 270.0 197 69.5
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 5.1e-70 268.5 235 58.7
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.4e-67 259.6 160 80.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.3e-67 258.5 168 76.8
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.8e-65 252.3 203 68.0
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 6.5e-65 251.5 177 68.4
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.2e-57 226.5 186 65.1
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 1.1e-53 214.2 120 85.0
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 3.3e-53 212.6 121 83.5
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 6.9e-51 204.9 189 59.3
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 7.7e-50 201.4 111 81.1
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 2.5e-48 196.4 121 78.5
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 1.8e-46 190.3 142 62.7
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 4.3e-45 185.7 166 60.2
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.8e-41 172.6 180 46.7
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 1.4e-38 164.1 204 44.1
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.6e-37 159.8 161 48.4
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 3.7e-36 156.0 173 47.4
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 5.3e-27 125.6 179 37.4
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 9.1e-27 124.8 68 82.4
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 5.0e-17 92.4 116 50.0
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 6.5e-17 92.0 153 32.0
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.8e-14 84.0 102 47.1
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.0e-14 83.2 123 44.7
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 2.2e-12 77.0 213 29.6
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 1.8e-06 57.4 67 52.2


User provided reference genes

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