Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 0.0e+00 1188.7 618 100.0
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 0.0e+00 1127.1 644 92.5
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 0.0e+00 1083.9 645 89.9
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.1e-229 799.3 677 69.3
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 3.1e-228 795.4 689 67.2
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 7.1e-201 704.5 581 70.7
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.3e-194 683.7 601 68.1
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.6e-147 527.3 711 51.6
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.9e-138 496.5 714 49.6
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 4.9e-117 426.0 650 46.5
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.8e-103 380.9 612 45.1
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 2.9e-101 373.6 613 45.2
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 6.9e-87 325.9 715 39.7
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 8.7e-82 308.9 619 41.2
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.9e-81 307.8 773 36.7
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 9.0e-79 298.9 689 37.4
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 2.7e-75 287.3 691 38.6
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.5e-73 281.6 685 37.8
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 3.3e-73 280.4 667 38.5
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 6.2e-72 276.2 690 37.1
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.4e-71 275.0 677 37.2
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.1e-71 273.9 700 36.3
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.2e-70 271.9 731 35.8
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 1.2e-70 271.9 705 35.9
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 7.6e-70 269.2 546 43.0
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.0e-69 268.9 721 36.6
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 1.3e-69 268.5 581 42.3
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 2.9e-69 267.3 667 38.7
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 4.2e-68 263.5 640 38.8
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 4.2e-68 263.5 718 36.6
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 5.5e-68 263.1 719 36.4
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 2.1e-67 261.2 688 36.5
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.1e-67 261.2 728 33.5
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 2.7e-67 260.8 567 40.6
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 5.1e-66 256.5 592 38.2
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.1e-66 256.5 707 34.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 3.3e-65 253.8 698 34.5
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 7.4e-65 252.7 611 38.5
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 7.4e-65 252.7 458 43.7
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 9.7e-65 252.3 591 38.6
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.6e-64 251.5 696 35.5
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 2.8e-64 250.8 652 37.7
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 6.3e-64 249.6 663 37.0
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.1e-63 248.8 703 34.0
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 2.4e-63 247.7 706 35.7
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 3.1e-63 247.3 525 39.6
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 4.1e-63 246.9 616 35.4
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 6.9e-63 246.1 704 34.4
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 1.2e-62 245.4 541 39.7
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.6e-62 244.2 590 38.8
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 3.4e-62 243.8 577 39.0
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 5.9e-62 243.0 707 35.1
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.0e-61 242.3 722 35.2
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.4e-60 238.4 583 36.9
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 3.2e-60 237.3 654 35.8
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 7.2e-60 236.1 698 34.4
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.2e-59 235.3 626 35.9
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.6e-59 235.0 597 35.8
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 7.9e-59 232.6 667 34.3
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 2.3e-58 231.1 609 35.0
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 3.9e-58 230.3 639 36.8
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.5e-57 228.4 611 35.8
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 7.4e-57 226.1 774 31.3
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 9.7e-57 225.7 617 36.0
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.3e-56 225.3 639 34.7
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 1.7e-56 224.9 690 34.8
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.2e-56 224.6 640 34.8
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 3.7e-56 223.8 536 37.7
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 4.1e-55 220.3 580 35.3
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 5.3e-55 219.9 746 32.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 9.1e-55 219.2 771 31.0
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 3.4e-54 217.2 619 34.1
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.1e-52 212.2 575 36.2
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 2.5e-52 211.1 632 34.3
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 2.1e-51 208.0 510 36.5
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 3.6e-51 207.2 774 32.0
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.4e-50 205.3 670 34.2
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 6.7e-50 203.0 607 32.9
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 2.0e-49 201.4 677 33.1
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 2.4e-47 194.5 669 32.6
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 3.2e-44 184.1 674 31.0
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 2.1e-43 181.4 592 32.6
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 8.8e-42 176.0 517 35.0
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.5e-41 175.3 342 38.9
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 4.4e-41 173.7 504 34.5
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 5.7e-41 173.3 574 32.1
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 5.7e-41 173.3 634 31.4
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 7.4e-41 172.9 530 31.7
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 2.8e-40 171.0 828 28.6
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 2.8e-40 171.0 506 34.6
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 8.2e-40 169.5 295 44.7
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 4.1e-39 167.2 558 31.7
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 2.6e-38 164.5 549 31.3
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 1.3e-37 162.2 583 30.9
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 2.2e-37 161.4 584 29.8
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.9e-36 158.3 570 30.2
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 4.2e-36 157.1 588 29.6
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 4.2e-36 157.1 560 30.2
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 1.6e-35 155.2 578 30.4
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 2.1e-35 154.8 518 30.9
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 2.7e-35 154.5 523 30.2
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 2.7e-35 154.5 523 30.2
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.7e-35 154.5 578 30.6
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 2.3e-34 151.4 531 30.1
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 2.3e-34 151.4 374 39.0
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 3.0e-34 151.0 546 29.9
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 8.3e-32 142.9 463 32.4
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 7.0e-31 139.8 514 29.2
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 3.5e-30 137.5 563 29.7
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.0e-29 136.0 557 29.3
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.0e-29 136.0 517 28.6
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 1.7e-29 135.2 557 29.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 5.0e-29 133.7 611 29.1
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 3.2e-28 131.0 521 32.8
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 5.2e-26 123.6 400 32.0
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.3e-21 109.0 191 44.0
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 2.8e-19 101.3 421 28.7
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.8e-19 101.3 297 32.0
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.8e-15 88.6 504 29.0
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 4.1e-15 87.4 253 36.0
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.4e-15 87.0 356 30.1
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 5.4e-15 87.0 280 33.9
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 1.6e-14 85.5 579 26.3
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 5.0e-13 80.5 319 31.0
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 8.6e-13 79.7 253 34.8
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.3e-12 77.8 141 39.0
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 7.5e-09 66.6 326 27.6
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 2.7e-06 58.2 60 58.3


User provided reference genes

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