Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g055270.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 1.1e-107 393.3 202 100.0
Sopen05g033710 Solanum pennellii HOM05D003139 ORTHO05D003540 9.7e-99 363.6 206 93.7
PGSC0003DMG400023494 Solanum tuberosum HOM05D003139 ORTHO05D003540 5.5e-86 321.2 211 85.3
Nitab4.5_0009769g0010 Nicotiana tabacum HOM05D003139 ORTHO05D003540 8.3e-50 201.1 213 61.5
Nitab4.5_0005744g0010 Nicotiana tabacum HOM05D003139 ORTHO05D003540 5.4e-49 198.4 214 61.7
Peaxi162Scf00519g00066 Petunia axillaris HOM05D003139 ORTHO05D003540 1.6e-45 186.8 205 60.0
Sopen11g002810 Solanum pennellii HOM05D003139 ORTHO05D003540 1.1e-30 137.5 201 48.3
Solyc11g006900.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 4.3e-30 135.6 195 48.2
Nitab4.5_0009833g0020 Nicotiana tabacum HOM05D003139 ORTHO05D003540 1.1e-28 131.0 224 45.5
Nitab4.5_0013140g0010 Nicotiana tabacum HOM05D003139 ORTHO05D003540 1.4e-28 130.6 224 45.1
PGSC0003DMG400023971 Solanum tuberosum HOM05D003139 ORTHO05D003540 2.4e-28 129.8 200 46.0
Peaxi162Scf00173g00210 Petunia axillaris HOM05D003139 ORTHO05D003540 3.2e-17 92.8 134 47.8
MSTRG.10370 Avicennia marina HOM05D003139 ORTHO05D003540 1.6e-16 90.5 178 37.6
Hma1.2p1_0874F.1_g231330 Hydrangea macrophylla HOM05D003139 ORTHO05D003540 2.7e-16 89.7 146 43.2
SalBow6G1960 Salvia bowleyana HOM05D003139 ORTHO05D003540 7.9e-16 88.2 156 42.3
Dinv11834 Davidia involucrata HOM05D003139 ORTHO05D003540 1.0e-15 87.8 169 40.8
Dinv01029 Davidia involucrata HOM05D003139 ORTHO05D003540 1.8e-15 87.0 180 38.3
Dinv10925 Davidia involucrata HOM05D003139 ORTHO05D003540 1.8e-15 87.0 180 38.3
ECA247G2190 Erigeron canadensis HOM05D003139 ORTHO05D003540 5.1e-15 85.5 134 41.0
Oeu047862.1 Olea europaea HOM05D003139 ORTHO05D003540 6.7e-15 85.1 175 36.0
Oeu012633.1 Olea europaea HOM05D003139 ORTHO05D003540 1.1e-14 84.3 148 41.2
Migut.F00874 Erythranthe guttata HOM05D003139 ORTHO05D003540 4.3e-14 82.4 121 45.5
Oeu024810.1 Olea europaea HOM05D003139 ORTHO05D003540 4.3e-14 82.4 119 44.5
Cc06_g05890 Coffea canephora HOM05D003139 ORTHO05D003540 5.7e-14 82.0 164 39.6
Lsat_1_v5_gn_5_164981 Lactuca sativa HOM05D003139 ORTHO05D003540 5.7e-14 82.0 137 43.1
Migut.L01785 Erythranthe guttata HOM05D003139 ORTHO05D003540 7.4e-14 81.6 192 34.4
SalBow5G1418 Salvia bowleyana HOM05D003139 ORTHO05D003540 7.4e-14 81.6 156 37.8
CSS0050344 Camellia sinensis var. sinensis HOM05D003139 ORTHO05D003540 9.6e-14 81.3 148 37.8
Nitab4.5_0000692g0050 Nicotiana tabacum HOM05D003139 ORTHO05D003540 3.7e-13 79.3 128 43.0
MD14G1023600 Malus domestica HOM05D003139 ORTHO05D003540 1.1e-12 77.8 128 39.1
ECA248G2961 Erigeron canadensis HOM05D003139 ORTHO05D003540 1.4e-12 77.4 123 41.5
HanXRQChr01g0010381 Helianthus annuus HOM05D003139 ORTHO05D003540 4.1e-12 75.9 128 37.5
Solyc09g009840.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 5.3e-12 75.5 147 40.1
Dinv21200 Davidia involucrata HOM05D003139 ORTHO05D003540 6.9e-12 75.1 134 38.8
Oeu017682.1 Olea europaea HOM05D003139 ORTHO05D003540 6.9e-12 75.1 157 35.0
EL10Ac7g16909 Beta vulgaris HOM05D003139 ORTHO05D003540 9.0e-12 74.7 206 32.5
Oeu047203.1 Olea europaea HOM05D003139 ORTHO05D003540 9.0e-12 74.7 171 35.1
Actinidia05423 Actinidia chinensis HOM05D003139 ORTHO05D003540 1.2e-11 74.3 126 36.5
DCAR_013395 Daucus carota HOM05D003139 ORTHO05D003540 1.5e-11 73.9 122 40.2
FAN14G1758 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.5e-11 73.9 126 38.9
PGSC0003DMG400028163 Solanum tuberosum HOM05D003139 ORTHO05D003540 1.5e-11 73.9 129 44.2
DCAR_020744 Daucus carota HOM05D003139 ORTHO05D003540 2.6e-11 73.2 177 35.6
PGR004G2661 Punica granatum HOM05D003139 ORTHO05D003540 2.6e-11 73.2 133 42.1
DCAR_028475 Daucus carota HOM05D003139 ORTHO05D003540 3.4e-11 72.8 140 39.3
Sopen09g004600 Solanum pennellii HOM05D003139 ORTHO05D003540 3.4e-11 72.8 137 40.1
FAN09G1837 Fragaria x ananassa HOM05D003139 ORTHO05D003540 4.5e-11 72.4 126 38.1
PGR142G1499 Punica granatum HOM05D003139 ORTHO05D003540 4.5e-11 72.4 166 33.1
FvH4_6g18850 Fragaria vesca HOM05D003139 ORTHO05D003540 5.8e-11 72.0 126 38.1
Sed0002377 Sechium edule HOM05D003139 ORTHO05D003540 5.8e-11 72.0 167 31.1
Sc20g0006320 Simmondsia chinensis HOM05D003139 ORTHO05D003540 5.8e-11 72.0 198 30.8
Solyc10g083330.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 5.8e-11 72.0 129 43.4
Sopen10g032810 Solanum pennellii HOM05D003139 ORTHO05D003540 5.8e-11 72.0 129 43.4
Oeu025672.1 Olea europaea HOM05D003139 ORTHO05D003540 1.0e-10 71.2 155 37.4
CSS0031410 Camellia sinensis var. sinensis HOM05D003139 ORTHO05D003540 1.3e-10 70.9 132 36.4
Hma1.2p1_0820F.1_g223870 Hydrangea macrophylla HOM05D003139 ORTHO05D003540 1.3e-10 70.9 148 35.8
FAN02G0223 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.7e-10 70.5 126 37.3
FAN05G0400 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.7e-10 70.5 126 37.3
FAN05G1773 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.7e-10 70.5 126 37.3
Peaxi162Scf00404g00061 Petunia axillaris HOM05D003139 ORTHO05D003540 1.7e-10 70.5 131 39.7
PGSC0003DMG400008878 Solanum tuberosum HOM05D003139 ORTHO05D003540 1.7e-10 70.5 123 41.5
Aqoxy4G02769 Aquilegia oxysepala HOM05D003139 ORTHO05D003540 2.2e-10 70.1 145 35.9
AUR62028515 Chenopodium quinoa HOM05D003139 ORTHO05D003540 2.2e-10 70.1 165 36.4
Ah.15g090850 Amaranthus hybridus HOM05D003139 ORTHO05D003540 2.9e-10 69.7 206 32.5
Cfa016615 Carpinus fangiana HOM05D003139 ORTHO05D003540 2.9e-10 69.7 210 32.9
Gohir.A09G139500 Gossypium hirsutum HOM05D003139 ORTHO05D003540 2.9e-10 69.7 182 34.6
Potri.006G212800 Populus trichocarpa HOM05D003139 ORTHO05D003540 3.8e-10 69.3 132 40.2
ClCG10G018920 Citrullus lanatus HOM05D003139 ORTHO05D003540 6.5e-10 68.6 184 33.7
CsaV3_6G040710 Cucumis sativus L. HOM05D003139 ORTHO05D003540 6.5e-10 68.6 127 33.9
Gorai.006G155000 Gossypium raimondii HOM05D003139 ORTHO05D003540 6.5e-10 68.6 157 35.0
CiPaw.09G014800 Carya illinoinensis HOM05D003139 ORTHO05D003540 8.4e-10 68.2 131 36.6
Duzib106G1991 Durio zibethinus HOM05D003139 ORTHO05D003540 8.4e-10 68.2 149 36.9
Glyma.03G196500 Glycine max HOM05D003139 ORTHO05D003540 8.4e-10 68.2 185 34.1
Gohir.D09G135100 Gossypium hirsutum HOM05D003139 ORTHO05D003540 8.4e-10 68.2 157 35.0
Nitab4.5_0001933g0030 Nicotiana tabacum HOM05D003139 ORTHO05D003540 8.4e-10 68.2 128 41.4
Nitab4.5_0014515g0010 Nicotiana tabacum HOM05D003139 ORTHO05D003540 8.4e-10 68.2 177 36.2
VMungo0720G0359 Vigna mungo HOM05D003139 ORTHO05D003540 8.4e-10 68.2 124 34.7
ClCG04G010080 Citrullus lanatus HOM05D003139 ORTHO05D003540 1.4e-09 67.4 131 39.7
Migut.J01028 Erythranthe guttata HOM05D003139 ORTHO05D003540 1.4e-09 67.4 167 31.7
Haze_19619 Corylus avellana HOM05D003139 ORTHO05D003540 1.9e-09 67.0 191 32.5
Medtr1g059890 Medicago truncatula HOM05D003139 ORTHO05D003540 1.9e-09 67.0 131 34.4
Potri.016G079500 Populus trichocarpa HOM05D003139 ORTHO05D003540 1.9e-09 67.0 137 41.6
QL07p038927 Quercus lobata HOM05D003139 ORTHO05D003540 1.9e-09 67.0 133 36.8
TWI53G0306 Tripterygium wilfordii HOM05D003139 ORTHO05D003540 1.9e-09 67.0 202 33.7
AUR62006190 Chenopodium quinoa HOM05D003139 ORTHO05D003540 2.5e-09 66.6 178 34.8
CDE02G4274 Ceratophyllum demersum HOM05D003139 ORTHO05D003540 3.2e-09 66.2 149 31.5
Glyma.10G073600 Glycine max HOM05D003139 ORTHO05D003540 3.2e-09 66.2 125 35.2
HanXRQChr04g0109331 Helianthus annuus HOM05D003139 ORTHO05D003540 3.2e-09 66.2 142 35.9
Phvul.001G190700 Phaseolus vulgaris HOM05D003139 ORTHO05D003540 3.2e-09 66.2 187 31.0
Lsat_1_v5_gn_9_20601 Lactuca sativa HOM05D003139 ORTHO05D003540 4.2e-09 65.9 128 37.5
MD12G1024700 Malus domestica HOM05D003139 ORTHO05D003540 4.2e-09 65.9 131 34.4
Oeu056878.1 Olea europaea HOM05D003139 ORTHO05D003540 4.2e-09 65.9 188 29.8
MELO3C024549.2 Cucumis melo HOM05D003139 ORTHO05D003540 5.5e-09 65.5 131 37.4
ECA232G3979 Erigeron canadensis HOM05D003139 ORTHO05D029286 5.5e-09 65.5 167 31.7
Prupe.7G109200 Prunus persica HOM05D003139 ORTHO05D003540 5.5e-09 65.5 127 35.4
TWI74G1218 Tripterygium wilfordii HOM05D003139 ORTHO05D003540 5.5e-09 65.5 128 38.3
Lsat_1_v5_gn_0_7921 Lactuca sativa HOM05D003139 ORTHO05D029286 7.1e-09 65.1 153 34.0
Nn2g14171 Nelumbo nucifera HOM05D003139 ORTHO05D003540 7.1e-09 65.1 176 34.1
SGA_v2.0_scaffold35G14064 Striga asiatica HOM05D003139 ORTHO05D003540 7.1e-09 65.1 180 33.3
Glyma.13G154300 Glycine max HOM05D003139 ORTHO05D003540 9.3e-09 64.7 123 35.0
Rhsim04G0132000 Rhododendron simsii HOM05D003139 ORTHO05D003540 9.3e-09 64.7 129 39.5
CDE08G0328 Ceratophyllum demersum HOM05D003139 ORTHO05D003540 1.2e-08 64.3 149 31.5
Phvul.007G152700 Phaseolus vulgaris HOM05D003139 ORTHO05D003540 1.2e-08 64.3 212 30.7
Sabra16G0085400 Salix brachista HOM05D003139 ORTHO05D003540 1.2e-08 64.3 136 37.5
Sabra16G0087500 Salix brachista HOM05D003139 ORTHO05D003540 1.2e-08 64.3 136 37.5
Atru.chr8.1495 Acer truncatum HOM05D003139 ORTHO05D003540 1.6e-08 63.9 174 33.9
Duzib093G1338 Durio zibethinus HOM05D003139 ORTHO05D003540 1.6e-08 63.9 169 33.1
Lalb_Chr20g0111681 Lupinus albus HOM05D003139 ORTHO05D003540 1.6e-08 63.9 191 29.3
CiPaw.10G010300 Carya illinoinensis HOM05D003139 ORTHO05D003540 2.7e-08 63.2 196 31.1
Nn6g34887 Nelumbo nucifera HOM05D003139 ORTHO05D003540 3.5e-08 62.8 153 32.0
Gohir.A01G206000 Gossypium hirsutum HOM05D003139 ORTHO05D003540 4.6e-08 62.4 168 32.7
Lalb_Chr25g0288311 Lupinus albus HOM05D003139 ORTHO05D003540 4.6e-08 62.4 193 31.1
unitig_8.g4968 Utricularia gibba HOM05D003139 ORTHO05D003540 4.6e-08 62.4 124 36.3
CSS0009772 Camellia sinensis var. sinensis HOM05D003139 ORTHO05D003540 7.9e-08 61.6 163 33.7
CANSAT64G2974 Cannabis sativa HOM05D003139 ORTHO05D003540 7.9e-08 61.6 168 31.5
Gohir.A04G062300 Gossypium hirsutum HOM05D003139 ORTHO05D003540 7.9e-08 61.6 133 36.1
TAR369G0615 Trochodendron aralioides HOM05D003139 ORTHO05D003540 7.9e-08 61.6 130 32.3
CsaV3_3G037330 Cucumis sativus L. HOM05D003139 ORTHO05D003540 1.0e-07 61.2 154 31.2
SGA_v2.0_scaffold13G06709 Striga asiatica HOM05D003139 ORTHO05D003540 1.0e-07 61.2 144 33.3
Lalb_Chr02g0154921 Lupinus albus HOM05D003139 ORTHO05D003540 1.3e-07 60.8 125 36.8
Psat6g080520 Pisum sativum HOM05D003139 ORTHO05D003540 1.3e-07 60.8 190 30.5
Sabra06G0163800 Salix brachista HOM05D003139 ORTHO05D003540 1.3e-07 60.8 207 31.4
Aa31LG10G7720 Aethionema arabicum HOM05D003139 ORTHO05D003540 1.8e-07 60.5 136 34.6
Gohir.D01G195400 Gossypium hirsutum HOM05D003139 ORTHO05D003540 1.8e-07 60.5 168 32.1
Gorai.002G239600 Gossypium raimondii HOM05D003139 ORTHO05D003540 1.8e-07 60.5 168 32.1
Sed0022451 Sechium edule HOM05D003139 ORTHO05D003540 1.8e-07 60.5 148 33.1
TPR.G9897 Trifolium pratense HOM05D003139 ORTHO05D003540 1.8e-07 60.5 183 31.7
Ca_08987_v3 Cicer arietinum L. HOM05D003139 ORTHO05D003540 2.3e-07 60.1 199 31.2
SGA_v2.0_scaffold184G39967 Striga asiatica HOM05D003139 ORTHO05D003540 2.3e-07 60.1 176 30.1
BcaC02g09232 Brassica carinata HOM05D003139 ORTHO05D003540 3.0e-07 59.7 156 33.3
HanXRQChr08g0229891 Helianthus annuus HOM05D003139 ORTHO05D003540 3.0e-07 59.7 138 35.5
Lsat_1_v5_gn_8_24181 Lactuca sativa HOM05D003139 ORTHO05D029286 3.9e-07 59.3 168 32.1
Actinidia31269 Actinidia chinensis HOM05D003139 ORTHO05D003540 5.1e-07 58.9 142 33.1
Ca_00900_v3 Cicer arietinum L. HOM05D003139 ORTHO05D003540 5.1e-07 58.9 208 29.8
DCAR_009168 Daucus carota HOM05D003139 ORTHO05D003540 5.1e-07 58.9 145 33.1
Aqoxy2G01158 Aquilegia oxysepala HOM05D003139 ORTHO05D003540 6.7e-07 58.5 171 36.3
BolC4t25610H Brassica oleracea HOM05D003139 ORTHO05D003540 1.1e-06 57.8 129 35.7
BraA05t19916Z Brassica rapa HOM05D003139 ORTHO05D003540 1.1e-06 57.8 168 33.3
Lsat_1_v5_gn_8_77361 Lactuca sativa HOM05D003139 ORTHO05D003540 1.1e-06 57.8 140 32.1
Manes.08G025900 Manihot esculenta HOM05D003139 ORTHO05D003540 1.1e-06 57.8 124 38.7
Psat3g032560 Pisum sativum HOM05D003139 ORTHO05D003540 1.1e-06 57.8 133 33.8
A05p09620 Brassica napus HOM05D003139 ORTHO05D003540 1.5e-06 57.4 168 33.3
Cpa.g.sc5.12 Carica papaya HOM05D003139 ORTHO05D003540 1.5e-06 57.4 131 35.9
BcaB02g09375 Brassica carinata HOM05D003139 ORTHO05D003540 1.9e-06 57.0 183 31.7
BolC4t28004H Brassica oleracea HOM05D003139 ORTHO05D003540 1.9e-06 57.0 174 31.6
Glyma.19G194957 Glycine max HOM05D003139 ORTHO05D003540 1.9e-06 57.0 199 33.2
Thecc.05G090100 Theobroma cacao HOM05D003139 ORTHO05D003540 1.9e-06 57.0 181 32.0
COL.COLO4_29723 Corchorus olitorius HOM05D003139 ORTHO05D003540 2.5e-06 56.6 181 34.3
Duzib128G1370 Durio zibethinus HOM05D003139 ORTHO05D003540 2.5e-06 56.6 190 31.6
Carub.0005s1916 Capsella rubella HOM05D003139 ORTHO05D003540 3.3e-06 56.2 150 31.3
C04p40300 Brassica napus HOM05D003139 ORTHO05D003540 4.3e-06 55.8 152 33.6
Lj5g0002620 Lotus japonicus HOM05D003139 ORTHO05D003540 4.3e-06 55.8 134 32.1
BcaC02g11724 Brassica carinata HOM05D003139 ORTHO05D003540 5.7e-06 55.5 168 32.7
C04p11930 Brassica napus HOM05D003139 ORTHO05D003540 5.7e-06 55.5 168 32.7
BolC4t22840H Brassica oleracea HOM05D003139 ORTHO05D003540 5.7e-06 55.5 168 32.7
BraA04t18268Z Brassica rapa HOM05D003139 ORTHO05D003540 5.7e-06 55.5 174 31.0
VMungo1383G1679 Vigna mungo HOM05D003139 ORTHO05D003540 5.7e-06 55.5 186 30.1
Aa31LG5G21340 Aethionema arabicum HOM05D003139 ORTHO05D003540 7.4e-06 55.1 174 31.0
Manes.09G054800 Manihot esculenta HOM05D003139 ORTHO05D003540 7.4e-06 55.1 194 31.4
Ah.08g210540 Amaranthus hybridus HOM05D003139 ORTHO05D003540 9.7e-06 54.7 159 29.6
AT3G52710 Arabidopsis thaliana HOM05D003139 ORTHO05D003540 9.7e-06 54.7 141 32.6
BcaB01g00349 Brassica carinata HOM05D003139 ORTHO05D003540 9.7e-06 54.7 174 29.3
MELO3C009477.2 Cucumis melo HOM05D003139 ORTHO05D003540 9.7e-06 54.7 154 30.5
Gohir.D04G099100 Gossypium hirsutum HOM05D003139 ORTHO05D003540 9.7e-06 54.7 176 31.2
Gorai.009G401500 Gossypium raimondii HOM05D003139 ORTHO05D003540 9.7e-06 54.7 176 31.2
HanXRQChr04g0109341 Helianthus annuus HOM05D003139 ORTHO05D003540 9.7e-06 54.7 156 35.9
PSO339G1651 Papaver somniferum HOM05D003139 ORTHO05D003540 9.7e-06 54.7 181 30.4


User provided reference genes

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