Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g054560.3 Solanum lycopersicum HOM05D005509 ORTHO05D006411 4.8e-85 318.2 205 100.0
Sopen05g033040 Solanum pennellii HOM05D005509 ORTHO05D006411 7.6e-83 310.8 205 97.6
PGSC0003DMG400023526 Solanum tuberosum HOM05D005509 ORTHO05D006411 3.3e-70 268.9 205 87.8
Nitab4.5_0014743g0010 Nicotiana tabacum HOM05D005509 ORTHO05D006411 1.8e-63 246.5 204 73.0
Nitab4.5_0001831g0030 Nicotiana tabacum HOM05D005509 ORTHO05D006411 8.2e-61 237.7 203 77.8
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 3.2e-57 225.7 204 60.3
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 3.2e-57 225.7 203 60.6
CSS0042515 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 4.2e-57 225.3 207 61.4
Lj8A85G36 Lonicera japonica HOM05D005509 ORTHO05D006411 2.7e-56 222.6 200 62.0
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 1.8e-55 219.9 205 61.0
Atru.chr12.494 Acer truncatum HOM05D005509 ORTHO05D006411 2.3e-55 219.5 204 59.8
Cc02_g08060 Coffea canephora HOM05D005509 ORTHO05D006411 3.0e-55 219.2 202 60.4
Actinidia13870 Actinidia chinensis HOM05D005509 ORTHO05D006411 5.7e-54 214.9 208 58.7
Dinv25997 Davidia involucrata HOM05D005509 ORTHO05D006411 4.8e-53 211.8 204 58.3
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 4.8e-53 211.8 201 58.7
Peaxi162Scf00015g01412 Petunia axillaris HOM05D005509 ORTHO05D006411 6.3e-53 211.5 208 60.6
TAR369G0916 Trochodendron aralioides HOM05D005509 ORTHO05D006411 6.3e-53 211.5 204 59.8
TAR369G1093 Trochodendron aralioides HOM05D005509 ORTHO05D006411 6.3e-53 211.5 204 59.8
LjContig00357g0008800 Lotus japonicus HOM05D005509 ORTHO05D006411 8.2e-53 211.1 204 56.4
Ciclev10032822m.g Citrus clementina HOM05D005509 ORTHO05D006411 1.1e-52 210.7 204 58.3
COL.COLO4_14983 Corchorus olitorius HOM05D005509 ORTHO05D006411 1.4e-52 210.3 205 59.0
Manes.10G032200 Manihot esculenta HOM05D005509 ORTHO05D006411 1.4e-52 210.3 205 58.5
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 1.8e-52 209.9 203 59.6
ClCG07G003330 Citrullus lanatus HOM05D005509 ORTHO05D006411 3.1e-52 209.1 207 58.0
Lalb_Chr21g0307401 Lupinus albus HOM05D005509 ORTHO05D006411 5.3e-52 208.4 206 55.8
Ca_11287_v3 Cicer arietinum L. HOM05D005509 ORTHO05D006411 9.1e-52 207.6 204 55.4
Lj5g0000580 Lotus japonicus HOM05D005509 ORTHO05D006411 9.1e-52 207.6 208 55.8
CSS0029595 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 1.5e-51 206.8 130 77.7
Hma1.2p1_0533F.1_g173520 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 2.0e-51 206.5 209 57.4
Rhsim09G0165100 Rhododendron simsii HOM05D005509 ORTHO05D006411 2.6e-51 206.1 209 55.5
TPR.G13986 Trifolium pratense HOM05D005509 ORTHO05D006411 2.6e-51 206.1 204 55.4
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 3.4e-51 205.7 210 58.1
Phvul.007G011900 Phaseolus vulgaris HOM05D005509 ORTHO05D006411 3.4e-51 205.7 204 53.9
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 4.5e-51 205.3 202 55.9
Medtr1g115285 Medicago truncatula HOM05D005509 ORTHO05D006411 5.9e-51 204.9 204 54.4
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 5.9e-51 204.9 205 56.6
Glyma.20G099700 Glycine max HOM05D005509 ORTHO05D006411 7.7e-51 204.5 204 52.9
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 1.0e-50 204.1 200 58.5
AUR62036379 Chenopodium quinoa HOM05D005509 ORTHO05D006411 1.0e-50 204.1 211 57.3
Duzib106G1457 Durio zibethinus HOM05D005509 ORTHO05D006411 1.3e-50 203.8 205 56.6
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 1.7e-50 203.4 204 55.9
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.7e-50 203.4 209 55.5
Psat6g235920 Pisum sativum HOM05D005509 ORTHO05D006411 1.7e-50 203.4 204 53.9
Gohir.A10G216300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 2.9e-50 202.6 205 56.1
Gohir.D10G225300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 8.5e-50 201.1 205 55.6
Gorai.011G256300 Gossypium raimondii HOM05D005509 ORTHO05D006411 8.5e-50 201.1 205 55.6
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 1.4e-49 200.3 130 74.6
VMungo0720G2814 Vigna mungo HOM05D005509 ORTHO05D006411 1.4e-49 200.3 204 53.4
Duzib114G0718 Durio zibethinus HOM05D005509 ORTHO05D006411 3.2e-49 199.1 204 54.9
HanXRQChr14g0458211 Helianthus annuus HOM05D005509 ORTHO05D006411 3.2e-49 199.1 203 56.2
Lsat_1_v5_gn_8_16220 Lactuca sativa HOM05D005509 ORTHO05D006411 4.2e-49 198.7 200 57.0
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 4.2e-49 198.7 204 56.9
Glyma.10G289200 Glycine max HOM05D005509 ORTHO05D006411 5.5e-49 198.4 204 52.5
arahy.Tifrunner.gnm1.ann1.LMNG4E Arachis hypogaea HOM05D005509 ORTHO05D006411 7.2e-49 198.0 205 52.7
Potri.010G207000 Populus trichocarpa HOM05D005509 ORTHO05D006411 7.2e-49 198.0 204 55.9
Sabra08G0038700 Salix brachista HOM05D005509 ORTHO05D006411 9.4e-49 197.6 204 55.4
DCAR_015180 Daucus carota HOM05D005509 ORTHO05D006411 1.2e-48 197.2 180 58.9
CANSAT56G3940 Cannabis sativa HOM05D005509 ORTHO05D006411 1.6e-48 196.8 213 54.0
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 1.6e-48 196.8 204 53.9
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.6e-48 196.8 204 53.9
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.6e-48 196.8 204 53.9
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 2.1e-48 196.4 204 53.9
PSO339G1164 Papaver somniferum HOM05D005509 ORTHO05D006411 4.6e-48 195.3 209 52.6
CANSAT56G0048 Cannabis sativa HOM05D005509 ORTHO05D006411 7.9e-48 194.5 215 54.0
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.0e-47 194.1 204 53.4
AUR62030741 Chenopodium quinoa HOM05D005509 ORTHO05D006411 1.4e-47 193.7 217 54.4
Lsat_1_v5_gn_2_116581 Lactuca sativa HOM05D005509 ORTHO05D006411 1.4e-47 193.7 203 54.2
Nn2g12800 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.8e-47 193.4 131 74.0
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 3.0e-47 192.6 187 53.5
ECA238G2577 Erigeron canadensis HOM05D005509 ORTHO05D006411 5.1e-47 191.8 130 73.1
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 8.8e-47 191.0 204 52.9
PSO648G0089 Papaver somniferum HOM05D005509 ORTHO05D006411 8.8e-47 191.0 209 51.7
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 1.1e-46 190.7 204 52.0
CARHR165400 Cardamine hirsuta HOM05D005509 ORTHO05D006411 2.0e-46 189.9 203 51.2
AL5G36540 Arabidopsis lyrata HOM05D005509 ORTHO05D006411 2.6e-46 189.5 203 52.2
A09p48320 Brassica napus HOM05D005509 ORTHO05D006411 2.6e-46 189.5 204 51.5
C08p30610 Brassica napus HOM05D005509 ORTHO05D006411 2.6e-46 189.5 204 51.5
BolC8t50677H Brassica oleracea HOM05D005509 ORTHO05D006411 2.6e-46 189.5 204 51.5
BraA09t40284Z Brassica rapa HOM05D005509 ORTHO05D006411 2.6e-46 189.5 204 51.5
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 2.6e-46 189.5 204 52.0
AT3G55390 Arabidopsis thaliana HOM05D005509 ORTHO05D006411 5.7e-46 188.3 203 51.7
ECA233G3830 Erigeron canadensis HOM05D005509 ORTHO05D006411 7.4e-46 188.0 200 54.0
BcaB01g00105 Brassica carinata HOM05D005509 ORTHO05D006411 9.7e-46 187.6 204 51.0
EL10Ac2g03407 Beta vulgaris HOM05D005509 ORTHO05D006411 1.3e-45 187.2 202 52.0
Carub.0005s2210 Capsella rubella HOM05D005509 ORTHO05D006411 1.7e-45 186.8 203 51.2
Aqoxy2G02060 Aquilegia oxysepala HOM05D005509 ORTHO05D006411 8.2e-45 184.5 192 53.6
Actinidia29219 Actinidia chinensis HOM05D005509 ORTHO05D006411 1.1e-44 184.1 119 74.8
HanXRQChr08g0220491 Helianthus annuus HOM05D005509 ORTHO05D006411 1.1e-44 184.1 202 52.5
Aa31LG10G10410 Aethionema arabicum HOM05D005509 ORTHO05D006411 1.8e-44 183.3 204 50.0
Cpa.g.sc1.389 Carica papaya HOM05D005509 ORTHO05D006411 2.4e-44 183.0 206 52.4
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 2.4e-44 183.0 204 51.0
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 1.5e-43 180.3 212 49.1
Nitab4.5_0003969g0090 Nicotiana tabacum HOM05D005509 ORTHO05D006411 2.6e-43 179.5 205 52.7
Nitab4.5_0005525g0100 Nicotiana tabacum HOM05D005509 ORTHO05D006411 4.5e-43 178.7 205 52.7
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 2.2e-42 176.4 202 51.0
THA.LOC104810024 Tarenaya hassleriana HOM05D005509 ORTHO05D006411 2.5e-41 172.9 209 48.8
ATR0559G011 Amborella trichopoda HOM05D005509 ORTHO05D006411 1.2e-40 170.6 212 42.9
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 1.2e-40 170.6 198 49.5
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 2.7e-40 169.5 199 49.7
FAN01G0775 Fragaria x ananassa HOM05D005509 ORTHO05D006411 7.9e-40 167.9 218 47.2
CDE09G0335 Ceratophyllum demersum HOM05D002573 ORTHO05D002918 3.9e-39 165.6 127 59.8
CDE02G1375 Ceratophyllum demersum HOM05D005509 ORTHO05D006411 5.7e-38 161.8 205 45.9
BcaB02g08425 Brassica carinata HOM05D005509 ORTHO05D006411 9.7e-38 161.0 196 48.0
Peaxi162Scf00760g00127 Petunia axillaris HOM05D005509 ORTHO05D006411 3.1e-36 156.0 192 49.5
Hma1.2p1_2608F.1_g325340 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 2.3e-31 139.8 82 80.5
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 5.2e-31 138.7 131 51.1
HPP92_006606 Vanilla planifolia HOM05D005509 ORTHO05D006411 1.5e-25 120.6 97 61.9
AagrBONN_evm.TU.Sc2ySwM_117.824 Anthoceros agrestis HOM05D005509 ORTHO05D006411 3.6e-24 115.9 123 47.2
Pp3c3_30480 Physcomitrium patens HOM05D005509 ORTHO05D006411 6.8e-23 111.7 126 44.4
MELO3C023854.2 Cucumis melo HOM05D005509 ORTHO05D006411 5.7e-22 108.6 141 48.2
Pp3c12_23720 Physcomitrium patens HOM05D005509 ORTHO05D006411 7.5e-22 108.2 126 43.7
Pp3c10_18090 Physcomitrium patens HOM05D005509 ORTHO05D006411 1.3e-21 107.5 121 45.5
Zm00001eb136610 Zea mays HOM05D005509 ORTHO05D006411 3.1e-20 102.8 124 44.4
arahy.Tifrunner.gnm1.ann1.QH4526 Arachis hypogaea HOM05D005509 ORTHO05D006411 1.9e-17 93.6 130 44.6
Sabra08G0038600 Salix brachista HOM05D005509 ORTHO05D006411 7.2e-17 91.7 192 38.0
FAN10G3714 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.5e-17 91.3 131 44.3
Oeu051004.1 Olea europaea HOM05D005509 ORTHO05D006411 4.0e-15 85.9 131 42.0
Cfa001498 Carpinus fangiana HOM05D005509 ORTHO05D006411 8.8e-15 84.7 123 47.2
Haze_17044 Corylus avellana HOM05D005509 ORTHO05D006411 3.4e-14 82.8 150 42.0
Sabra10G0159800 Salix brachista HOM05D005509 ORTHO05D006411 3.4e-14 82.8 123 44.7
Nn2g12496 Nelumbo nucifera HOM05D005509 ORTHO05D006411 2.8e-13 79.7 50 74.0
Os12g0568700 Oryza sativa ssp. japonica HOM05D005509 ORTHO05D006411 4.3e-09 65.9 54 53.7
BolC4t25264H Brassica oleracea HOM05D005509 ORTHO05D006411 9.5e-09 64.7 48 64.6
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 1.2e-08 64.3 120 30.8
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.8e-08 63.2 120 30.8
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 8.0e-08 61.6 120 30.0
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 3.0e-07 59.7 117 29.9
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 3.0e-07 59.7 118 29.7
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 3.0e-07 59.7 117 29.9
SEGI_21969 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 3.0e-07 59.7 129 28.7
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 4.0e-07 59.3 117 29.9
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 4.0e-07 59.3 119 29.4
BcaB05g23134 Brassica carinata HOM05D005509 ORTHO05D006411 6.8e-07 58.5 55 50.9
C04p36990 Brassica napus HOM05D005509 ORTHO05D006411 6.8e-07 58.5 149 41.6
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 8.9e-07 58.2 111 31.5
ATR0594G080 Amborella trichopoda HOM05D001228 ORTHO05D003869 1.2e-06 57.8 112 27.7
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 1.5e-06 57.4 117 29.1
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 1.5e-06 57.4 117 29.1
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 1.5e-06 57.4 117 29.9
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.0e-06 57.0 121 29.8
Pp3c13_22040 Physcomitrium patens HOM05D005509 ORTHO05D006411 2.6e-06 56.6 124 26.6
PGR044G0099 Punica granatum HOM05D001228 ORTHO05D002377 2.6e-06 56.6 106 34.9
Ciclev10012823m.g Citrus clementina HOM05D001228 ORTHO05D003869 3.4e-06 56.2 117 29.1
Potri.016G128200 Populus trichocarpa HOM05D001228 ORTHO05D003869 3.4e-06 56.2 117 29.1
SGA_v2.0_scaffold110G31183 Striga asiatica HOM05D001228 ORTHO05D003869 3.4e-06 56.2 117 29.9
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 4.4e-06 55.8 118 28.8
Medtr4g013270 Medicago truncatula HOM05D001228 ORTHO05D003869 4.4e-06 55.8 112 25.0
HPP92_001132 Vanilla planifolia HOM05D001228 ORTHO05D003869 4.4e-06 55.8 112 32.1
AUR62006291 Chenopodium quinoa HOM05D001228 ORTHO05D015828 5.7e-06 55.5 114 30.7
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 5.7e-06 55.5 117 29.9
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 5.7e-06 55.5 125 30.4
Ca_07712_v3 Cicer arietinum L. HOM05D001228 ORTHO05D003869 7.5e-06 55.1 111 30.6
Migut.O00918 Erythranthe guttata HOM05D001228 ORTHO05D003869 7.5e-06 55.1 112 29.5
Atru.chr8.2349 Acer truncatum HOM05D001228 ORTHO05D003869 9.8e-06 54.7 117 30.8
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 9.8e-06 54.7 117 29.9
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 9.8e-06 54.7 124 30.6
CANSAT35G0968 Cannabis sativa HOM05D001228 ORTHO05D003869 9.8e-06 54.7 117 30.8
SGA_v2.0_scaffold240G44063 Striga asiatica HOM05D001228 ORTHO05D003869 9.8e-06 54.7 117 29.9


User provided reference genes

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