Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 5.3e-117 424.5 230 100.0
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.0e-116 422.5 230 99.6
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 7.4e-111 404.1 230 95.7
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.1e-95 353.6 209 85.2
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.3e-94 350.1 209 83.7
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 6.1e-89 331.3 203 81.8
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.2e-86 322.8 210 76.7
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.1e-85 320.5 210 75.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-85 320.5 209 75.6
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.1e-85 320.5 197 78.7
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.3e-85 318.2 209 77.0
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 7.0e-85 317.8 210 76.2
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.2e-84 317.0 210 76.2
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.0e-84 316.2 198 78.8
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 5.9e-84 314.7 230 73.5
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.7e-83 313.2 224 70.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 2.9e-83 312.4 192 79.7
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.8e-83 312.0 212 74.1
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.5e-82 310.1 197 78.2
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.5e-82 310.1 205 75.1
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.9e-82 309.7 212 73.1
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.9e-82 309.7 197 77.7
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.5e-82 309.3 197 77.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 3.2e-82 308.9 231 71.9
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.2e-82 308.9 201 73.1
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.2e-82 308.9 210 74.8
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 4.2e-82 308.5 208 73.6
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.2e-82 308.5 200 77.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 4.2e-82 308.5 199 76.9
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 4.2e-82 308.5 223 70.9
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.2e-82 308.5 223 70.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.2e-82 308.5 201 73.1
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.2e-82 308.5 201 73.1
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 4.2e-82 308.5 203 75.4
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 4.2e-82 308.5 210 75.2
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 5.5e-82 308.1 223 70.4
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 5.5e-82 308.1 199 76.9
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.2e-82 307.8 223 70.9
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.2e-82 307.8 223 70.9
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 7.2e-82 307.8 206 74.3
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 9.4e-82 307.4 231 68.0
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 9.4e-82 307.4 210 71.4
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.2e-81 307.0 197 76.1
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.1e-81 306.2 197 78.2
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.1e-81 306.2 223 70.4
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.7e-81 305.8 198 74.7
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.6e-81 305.4 209 71.8
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.7e-81 305.1 212 73.6
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.1e-81 304.7 204 74.0
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 8.0e-81 304.3 212 73.1
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.0e-80 303.9 229 71.2
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.0e-80 303.9 212 73.6
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.4e-80 303.5 223 72.2
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.4e-80 303.5 223 72.2
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.8e-80 303.1 204 74.0
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.3e-80 302.8 205 71.7
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 4.0e-80 302.0 198 73.7
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 4.0e-80 302.0 232 71.1
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 5.2e-80 301.6 209 73.7
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 5.2e-80 301.6 202 76.2
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 5.2e-80 301.6 197 76.1
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 6.7e-80 301.2 228 73.2
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 8.8e-80 300.8 209 69.4
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.5e-79 300.1 205 73.2
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.0e-79 299.7 232 70.7
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 3.3e-79 298.9 211 71.6
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 3.3e-79 298.9 211 71.6
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 5.7e-79 298.1 230 66.5
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 9.7e-79 297.4 223 65.9
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.3e-78 297.0 216 68.5
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.8e-78 295.0 195 73.3
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.1e-77 293.9 198 74.2
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.4e-77 293.5 189 77.2
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 3.1e-77 292.4 207 72.9
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 1.2e-76 290.4 192 75.0
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.7e-76 289.3 218 70.6
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.5e-76 288.9 192 72.4
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 5.9e-76 288.1 189 75.7
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 7.7e-76 287.7 204 71.1
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 7.7e-76 287.7 204 70.1
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 6.5e-75 284.6 214 68.2
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 3.2e-74 282.3 214 66.8
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 3.2e-74 282.3 194 75.3
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 9.4e-74 280.8 204 69.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.1e-73 279.6 197 70.6
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 3.6e-73 278.9 193 74.6
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.6e-73 278.9 200 71.0
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 6.1e-73 278.1 195 71.8
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.4e-72 276.9 211 66.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.4e-72 276.9 193 74.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 4.4e-71 271.9 205 70.7
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 9.8e-71 270.8 189 69.3
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.3e-70 270.4 196 72.4
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 1.7e-70 270.0 197 69.0
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.2e-70 269.6 196 71.9
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 3.7e-70 268.9 198 71.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 3.7e-70 268.9 197 68.5
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 1.4e-69 266.9 185 73.5
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.1e-69 265.8 198 70.7
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 9.1e-69 264.2 198 69.7
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 9.1e-69 264.2 198 70.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 9.1e-69 264.2 198 69.7
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-68 263.5 198 69.2
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.0e-68 263.1 198 69.2
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.7e-68 262.7 189 70.4
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.5e-68 261.9 198 69.2
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 7.7e-68 261.2 198 70.2
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 7.7e-68 261.2 198 70.2
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 7.7e-68 261.2 198 70.2
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.7e-68 261.2 201 64.2
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 2.3e-67 259.6 196 63.8
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.3e-67 259.6 198 69.7
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.9e-67 259.2 198 69.7
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.9e-67 259.2 200 64.5
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 5.0e-67 258.5 199 68.3
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.6e-67 258.1 192 65.6
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.5e-66 256.9 189 68.3
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.1e-65 253.1 195 68.2
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.8e-65 252.7 191 66.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.0e-64 250.8 196 68.4
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.8e-64 250.0 207 61.8
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.3e-64 249.6 201 63.2
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-61 240.7 197 64.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 6.6e-59 231.5 205 62.4
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.2e-57 227.3 133 80.5
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.0e-56 224.2 165 72.1
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.0e-56 224.2 201 63.2
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.3e-54 217.2 193 54.9
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 8.3e-54 214.5 167 70.1
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.9e-53 213.4 166 65.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.0e-47 193.4 112 82.1
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 6.4e-46 188.3 203 53.2
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.3e-43 180.6 201 52.7
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.3e-42 176.0 123 67.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 1.4e-40 170.6 126 69.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.2e-38 163.3 102 73.5
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 7.1e-37 158.3 104 72.1
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.6e-36 155.6 104 71.2
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.3e-19 100.9 62 77.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 3.8e-14 82.8 49 75.5


User provided reference genes

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