Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 2.5e-113 412.1 211 100.0
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 2.5e-113 412.1 211 100.0
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 9.5e-113 410.2 211 99.5
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 5.7e-110 401.0 211 96.2
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 5.4e-100 367.9 236 83.1
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 8.9e-95 350.5 202 89.6
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.9e-93 345.5 209 87.1
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 5.4e-92 341.3 212 81.6
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 9.2e-92 340.5 202 84.7
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 7.8e-91 337.4 210 81.4
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 1.3e-90 336.7 212 81.6
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.2e-86 323.6 203 82.3
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 5.8e-86 321.2 202 83.7
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 7.6e-86 320.9 210 81.0
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 9.2e-84 313.9 210 79.5
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 5.1e-82 308.1 210 78.1
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 2.4e-79 299.3 209 74.2
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 6.8e-79 297.7 203 74.9
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 8.9e-79 297.4 203 74.4
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 5.8e-78 294.7 213 71.8
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.9e-76 289.7 206 74.3
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 2.4e-76 289.3 207 72.9
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.0e-74 283.9 189 77.2
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 1.3e-74 283.5 206 73.3
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 2.3e-74 282.7 210 70.0
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 3.0e-74 282.3 210 68.1
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 3.9e-74 282.0 207 72.0
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.1e-73 280.4 210 67.1
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.5e-73 280.0 215 69.3
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 1.9e-73 279.6 213 69.5
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 9.6e-73 277.3 213 68.1
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.3e-72 276.9 213 68.5
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 1.6e-72 276.6 202 70.3
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 2.1e-72 276.2 176 80.7
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 4.8e-72 275.0 215 67.0
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 4.8e-72 275.0 213 67.6
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 8.1e-72 274.2 194 71.6
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.4e-71 273.5 213 67.6
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 2.4e-71 272.7 230 64.8
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.4e-71 272.7 210 66.7
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.4e-71 272.7 210 66.7
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 2.4e-71 272.7 210 66.7
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 5.3e-71 271.6 198 68.7
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 5.3e-71 271.6 213 67.1
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 1.5e-70 270.0 213 65.3
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 1.5e-70 270.0 210 65.7
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 2.0e-70 269.6 210 66.2
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 2.0e-70 269.6 210 65.2
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.0e-70 269.6 213 65.7
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.0e-70 269.6 213 65.7
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.6e-70 269.2 213 65.7
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 2.6e-70 269.2 213 64.8
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 3.4e-70 268.9 213 65.7
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 5.8e-70 268.1 210 64.8
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 5.8e-70 268.1 213 65.3
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 7.6e-70 267.7 210 65.7
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.3e-69 266.9 202 67.8
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.7e-69 266.5 201 68.2
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 1.7e-69 266.5 207 65.2
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.7e-69 266.5 210 64.3
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 2.2e-69 266.2 213 62.9
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.8e-69 265.4 202 67.3
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 3.8e-69 265.4 210 63.8
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 4.9e-69 265.0 202 66.3
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 6.4e-69 264.6 201 67.7
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.4e-69 264.2 202 67.3
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.1e-68 263.8 210 63.3
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.4e-68 263.5 213 62.9
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 1.9e-68 263.1 212 65.6
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 2.4e-68 262.7 201 67.2
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 2.4e-68 262.7 212 64.2
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 3.2e-68 262.3 210 63.8
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 4.2e-68 261.9 213 63.8
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 7.1e-68 261.2 213 61.5
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 7.1e-68 261.2 213 63.4
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 7.1e-68 261.2 212 63.7
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 2.7e-67 259.2 196 66.3
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 3.5e-67 258.8 199 64.8
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 1.0e-66 257.3 213 62.4
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.7e-66 256.5 199 65.8
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 2.3e-66 256.1 208 62.5
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 3.9e-66 255.4 213 62.4
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 3.9e-66 255.4 206 63.6
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 8.7e-66 254.2 216 59.7
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 3.3e-65 252.3 197 66.0
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 4.3e-65 251.9 212 61.8
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 7.3e-65 251.1 213 60.1
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.6e-64 250.0 156 84.0
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 4.8e-64 248.4 213 60.6
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 6.2e-64 248.1 213 60.6
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 8.1e-64 247.7 213 60.1
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 1.1e-63 247.3 213 61.0
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 1.8e-63 246.5 213 61.0
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 1.8e-63 246.5 213 60.1
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 3.1e-63 245.7 213 60.6
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 5.3e-63 245.0 217 62.2
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.2e-62 243.8 213 60.1
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.0e-62 243.0 215 61.9
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 9.9e-62 240.7 213 59.6
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 9.9e-62 240.7 186 64.5
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 2.2e-61 239.6 206 60.2
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 2.2e-61 239.6 206 59.7
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.4e-60 236.9 213 61.5
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 9.3e-60 234.2 194 61.9
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 1.6e-59 233.4 191 62.3
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 2.1e-59 233.0 173 65.3
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 3.5e-59 232.3 205 57.1
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 4.5e-54 215.3 145 71.0
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 4.2e-52 208.8 190 55.8
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 2.3e-50 203.0 135 79.3
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 4.3e-49 198.7 172 57.0
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 3.9e-42 175.6 212 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 7.4e-41 171.4 171 52.0
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.5e-38 162.2 113 70.8
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 1.5e-33 147.1 181 40.3
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 7.4e-33 144.8 181 40.3
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 9.4e-28 127.9 177 42.4
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 1.2e-27 127.5 63 90.5
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 2.0e-25 120.2 79 74.7
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.4e-23 114.0 114 48.2
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 4.1e-23 112.5 105 57.1
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 1.4e-18 97.4 50 86.0
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 1.1e-17 94.4 125 44.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.8e-15 87.0 46 87.0
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 1.3e-13 80.9 91 49.5
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 5.0e-13 79.0 81 53.1
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 5.5e-12 75.5 87 49.4
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 1.8e-07 60.5 49 61.2
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 7.0e-07 58.5 129 34.1
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 2.7e-06 56.6 79 40.5
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 3.5e-06 56.2 41 75.6
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 3.5e-06 56.2 47 68.1
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 5.9e-06 55.5 84 39.3


User provided reference genes

Program Settings