Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.6e-85 319.7 201 100.0
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 4.7e-85 318.2 201 99.5
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 3.1e-81 305.4 201 96.5
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 7.8e-56 221.1 201 78.6
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 4.1e-49 198.7 205 59.5
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 5.4e-49 198.4 201 70.6
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 4.6e-48 195.3 201 68.7
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.0e-47 194.1 201 73.1
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.5e-46 189.5 201 61.2
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 2.5e-46 189.5 202 62.9
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 4.3e-46 188.7 184 60.3
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.8e-44 183.3 191 58.6
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 2.0e-43 179.9 196 66.8
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 5.4e-41 171.8 200 51.5
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 2.1e-40 169.9 190 54.7
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 2.3e-39 166.4 181 52.5
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 3.9e-39 165.6 186 52.2
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 5.1e-39 165.2 201 49.3
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 5.1e-39 165.2 188 52.7
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 6.6e-39 164.9 181 51.9
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 1.9e-38 163.3 201 49.3
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 4.3e-38 162.2 168 52.4
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 5.6e-38 161.8 200 49.0
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 5.6e-38 161.8 201 48.3
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 2.8e-37 159.5 198 49.5
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 4.7e-37 158.7 165 54.5
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 4.7e-37 158.7 165 55.2
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 6.2e-37 158.3 168 51.2
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 8.1e-37 157.9 174 52.3
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.3e-36 156.4 168 51.2
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 8.9e-36 154.5 181 50.8
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 1.5e-35 153.7 160 56.2
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.0e-35 153.3 177 50.3
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 4.4e-35 152.1 174 55.7
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 4.4e-35 152.1 168 51.8
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 1.7e-34 150.2 172 52.3
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 2.2e-34 149.8 192 57.8
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.9e-34 149.4 182 50.5
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 8.3e-34 147.9 200 57.0
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.1e-33 147.5 183 61.2
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.1e-33 147.5 201 53.2
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 1.4e-33 147.1 180 51.7
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.9e-33 146.7 193 47.2
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 2.4e-33 146.4 193 46.1
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 3.2e-33 146.0 169 50.3
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 4.1e-33 145.6 199 44.7
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 7.1e-33 144.8 169 50.3
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 9.2e-33 144.4 169 49.7
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 9.2e-33 144.4 201 45.3
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.2e-32 144.1 201 45.8
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.6e-32 143.7 164 51.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 2.1e-32 143.3 201 46.3
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 2.1e-32 143.3 201 46.3
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 3.5e-32 142.5 201 46.3
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 4.6e-32 142.1 191 56.0
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 4.6e-32 142.1 179 48.0
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.0e-31 141.0 190 58.4
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 2.3e-31 139.8 180 61.1
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 2.3e-31 139.8 165 64.2
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.9e-31 139.0 184 48.9
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 3.9e-31 139.0 215 43.7
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 8.6e-31 137.9 179 46.4
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 8.6e-31 137.9 179 46.4
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 8.6e-31 137.9 184 47.8
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 8.6e-31 137.9 177 49.2
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.5e-30 137.1 190 46.3
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 4.3e-30 135.6 184 47.8
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.6e-30 135.2 184 46.7
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 7.3e-30 134.8 202 44.1
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.6e-29 133.7 155 51.0
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 1.6e-29 133.7 199 50.3
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 2.1e-29 133.3 178 44.9
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 3.6e-29 132.5 168 47.0
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 3.6e-29 132.5 155 50.3
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 4.7e-29 132.1 201 49.3
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 4.7e-29 132.1 156 49.4
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.1e-28 131.0 178 46.1
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.4e-28 130.6 163 49.7
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 2.4e-28 129.8 179 49.7
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 4.0e-28 129.0 169 49.1
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 4.0e-28 129.0 178 60.7
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 6.8e-28 128.3 175 49.7
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 8.9e-28 127.9 173 47.4
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.6e-27 126.3 184 44.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.6e-27 126.3 184 44.6
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 2.6e-27 126.3 182 56.0
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 7.6e-27 124.8 203 46.3
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 9.9e-27 124.4 179 48.6
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 3.8e-26 122.5 203 50.2
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 4.9e-26 122.1 168 47.0
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 4.9e-26 122.1 196 41.8
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 8.4e-26 121.3 154 64.3
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 8.4e-26 121.3 154 64.3
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.1e-25 120.9 202 53.0
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.1e-25 120.9 190 56.8
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.4e-25 120.6 169 43.2
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 2.4e-25 119.8 156 52.6
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 2.4e-25 119.8 205 55.6
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 2.4e-25 119.8 188 50.5
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 1.2e-24 117.5 190 55.8
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 2.1e-24 116.7 218 39.4
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.5e-24 115.9 193 56.0
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 4.6e-24 115.5 176 39.8
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 7.8e-24 114.8 123 66.7
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.3e-23 113.2 208 38.5
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 3.0e-23 112.8 171 39.8
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 1.5e-22 110.5 185 39.5
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 1.9e-22 110.2 182 52.2
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 2.5e-22 109.8 109 57.8
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 2.1e-21 106.7 180 53.9
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 2.1e-21 106.7 180 48.3
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 1.1e-20 104.4 185 42.7
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.8e-20 103.6 180 53.3
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 2.0e-19 100.1 204 50.0
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 4.4e-19 99.0 172 48.3
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-18 97.1 169 45.0
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.4e-17 94.0 162 54.9
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 9.3e-17 91.3 186 36.6
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.7e-16 89.7 176 49.4
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 6.0e-16 88.6 175 37.1
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.3e-15 87.4 145 41.4
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 3.3e-14 82.8 104 48.1
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 5.6e-14 82.0 181 39.2
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 5.6e-14 82.0 181 39.2
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 5.6e-14 82.0 91 51.6
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 3.6e-13 79.3 180 42.2
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 6.2e-13 78.6 156 51.3
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 2.4e-12 76.6 147 39.5
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 3.1e-12 76.3 103 59.2
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 1.2e-11 74.3 103 45.6
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 1.5e-11 73.9 150 30.7
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 2.6e-11 73.2 103 64.1
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.6e-11 73.2 57 71.9
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 9.9e-11 71.2 103 69.9
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.9e-10 69.7 68 51.5
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.9e-10 69.7 62 61.3
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 4.2e-09 65.9 96 49.0
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 5.4e-09 65.5 121 56.2
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 9.3e-09 64.7 125 51.2
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 3.0e-07 59.7 53 62.3
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 3.9e-07 59.3 42 61.9


User provided reference genes

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