Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 6.1e-29 130.6 89 100.0
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 2.0e-27 125.6 89 93.3
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 7.5e-27 123.6 89 74.2
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.3e-23 112.8 88 63.6
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 3.8e-23 111.3 90 66.7
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 8.3e-18 93.6 89 77.5
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.8e-17 92.4 87 51.7
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.7e-16 88.6 87 52.9
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 2.7e-16 88.6 89 51.7
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.7e-16 88.6 87 50.6
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 5.9e-16 87.4 73 60.3
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 7.7e-16 87.0 89 52.8
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.0e-15 86.7 87 50.6
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 1.0e-15 86.7 90 56.7
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.3e-15 85.5 87 51.7
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 8.6e-15 83.6 84 52.4
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 8.6e-15 83.6 84 52.4
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 8.6e-15 83.6 84 52.4
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 8.6e-15 83.6 84 52.4
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 8.6e-15 83.6 84 52.4
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 8.6e-15 83.6 84 52.4
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 8.6e-15 83.6 84 52.4
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 8.6e-15 83.6 84 52.4
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.5e-14 82.8 88 47.7
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 2.5e-14 82.0 90 55.6
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 3.3e-14 81.6 87 71.3
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 4.2e-14 81.3 90 53.3
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 2.1e-13 79.0 84 52.4
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.7e-13 77.8 87 47.1
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 6.1e-13 77.4 89 74.2
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 1.4e-12 76.3 89 65.2
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 5.2e-12 74.3 96 47.9
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 6.8e-12 73.9 88 60.2
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 1.2e-11 73.2 88 60.2
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 1.2e-11 73.2 88 60.2
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 3.4e-11 71.6 103 44.7
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 5.7e-11 70.9 89 42.7
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 9.8e-11 70.1 89 42.7
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 9.8e-11 70.1 89 42.7
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.3e-10 69.7 83 41.0
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 3.7e-10 68.2 83 42.2
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 4.9e-10 67.8 83 63.9
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 6.3e-10 67.4 83 60.2
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 6.3e-10 67.4 83 60.2
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 6.3e-10 67.4 83 61.4
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 1.4e-09 66.2 89 39.3
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 1.4e-09 66.2 80 61.2
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 1.8e-09 65.9 91 40.7
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 2.4e-09 65.5 86 41.9
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 3.1e-09 65.1 83 62.7
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 3.1e-09 65.1 85 42.4
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 4.1e-09 64.7 73 43.8
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 7.0e-09 63.9 85 41.2
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 9.2e-09 63.5 85 41.2
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 9.2e-09 63.5 83 60.2
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 9.2e-09 63.5 83 60.2
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.6e-08 62.8 85 41.2
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 1.6e-08 62.8 65 47.7
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.0e-08 62.4 83 56.6
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 2.0e-08 62.4 92 40.2
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 3.5e-08 61.6 85 40.0
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 5.9e-08 60.8 86 57.0
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.9e-08 60.8 83 48.2
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 7.8e-08 60.5 89 40.4
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.0e-07 60.1 82 54.9
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.7e-07 59.3 89 55.1
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 1.7e-07 59.3 89 55.1
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.7e-07 59.3 83 39.8
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 5.0e-07 57.8 109 46.8
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 5.0e-07 57.8 109 46.8
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 5.0e-07 57.8 109 46.8
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 5.0e-07 57.8 109 46.8
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 5.0e-07 57.8 91 59.3
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 5.0e-07 57.8 91 59.3
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 5.0e-07 57.8 91 59.3
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 5.0e-07 57.8 91 59.3
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 5.0e-07 57.8 35 74.3
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 5.0e-07 57.8 109 46.8
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 6.6e-07 57.4 74 55.4
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 8.6e-07 57.0 91 54.9
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-06 56.2 74 54.1
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 1.9e-06 55.8 110 47.3
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 1.9e-06 55.8 110 47.3
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 3.3e-06 55.1 34 70.6
Sopen12g032850 Solanum pennellii HOM05D005842 ORTHO05D007077 7.3e-06 53.9 88 36.4
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 9.5e-06 53.5 85 41.2
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 9.5e-06 53.5 85 41.2
Solyc12g097050.2 Solanum lycopersicum HOM05D005842 ORTHO05D007077 9.5e-06 53.5 88 36.4


User provided reference genes

Program Settings