Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 1.5e-95 352.8 177 100.0
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 2.7e-92 342.0 171 98.8
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 3.7e-86 321.6 171 92.4
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 1.1e-66 256.9 156 81.4
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 5.6e-66 254.6 175 74.9
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 2.8e-65 252.3 175 74.3
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 9.5e-58 227.3 149 74.5
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 2.1e-44 183.0 176 55.7
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 3.0e-43 179.1 173 54.3
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 6.2e-41 171.4 164 54.3
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 1.5e-39 166.8 175 52.6
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 2.0e-39 166.4 176 52.3
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 5.8e-39 164.9 182 51.6
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 7.6e-39 164.5 170 56.5
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 1.7e-38 163.3 147 58.5
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 2.9e-38 162.5 147 57.1
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 2.9e-38 162.5 180 53.9
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.8e-38 162.2 127 59.1
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 3.8e-38 162.2 149 57.7
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 4.9e-38 161.8 181 49.7
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 4.9e-38 161.8 179 50.8
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 1.4e-37 160.2 183 50.8
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.4e-37 160.2 168 56.0
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.9e-37 159.8 171 48.0
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 1.9e-37 159.8 168 55.4
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.9e-37 159.8 174 50.6
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 3.2e-37 159.1 183 51.9
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 5.4e-37 158.3 140 59.3
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 5.4e-37 158.3 143 58.0
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 5.4e-37 158.3 180 50.0
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 7.1e-37 157.9 167 55.1
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 1.2e-36 157.1 174 54.0
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.6e-36 156.8 177 52.0
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 1.6e-36 156.8 134 61.2
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 2.1e-36 156.4 180 48.9
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 2.7e-36 156.0 167 52.1
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 7.9e-36 154.5 141 60.3
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 1.0e-35 154.1 178 52.8
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.7e-35 153.3 167 50.3
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 1.7e-35 153.3 178 52.8
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 2.3e-35 152.9 88 79.5
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 3.9e-35 152.1 173 50.3
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 3.9e-35 152.1 91 76.9
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 5.1e-35 151.8 174 50.0
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 5.1e-35 151.8 115 65.2
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 5.1e-35 151.8 127 61.4
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.1e-34 150.6 180 47.8
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.1e-34 150.6 151 56.3
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 1.1e-34 150.6 86 77.9
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 1.5e-34 150.2 147 52.4
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 1.9e-34 149.8 132 57.6
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 2.5e-34 149.4 177 48.6
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 3.3e-34 149.1 175 50.3
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 7.3e-34 147.9 90 71.1
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 7.3e-34 147.9 175 46.9
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 9.6e-34 147.5 152 53.9
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 9.6e-34 147.5 154 50.6
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 9.6e-34 147.5 186 46.8
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.3e-33 147.1 141 53.2
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 2.8e-33 146.0 174 48.9
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 2.8e-33 146.0 141 55.3
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 2.8e-33 146.0 98 68.4
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 4.8e-33 145.2 127 59.1
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 4.8e-33 145.2 110 65.5
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 6.2e-33 144.8 175 50.3
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-32 144.1 171 48.0
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-32 144.1 171 48.0
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-32 144.1 171 48.0
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 1.4e-32 143.7 177 47.5
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 1.8e-32 143.3 182 46.7
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 1.8e-32 143.3 180 49.4
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 3.1e-32 142.5 177 47.5
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 9.0e-32 141.0 101 62.4
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 9.0e-32 141.0 86 73.3
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 9.0e-32 141.0 85 75.3
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 1.5e-31 140.2 81 75.3
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 2.6e-31 139.4 118 56.8
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 2.6e-31 139.4 177 47.5
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 4.5e-31 138.7 174 47.1
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 4.5e-31 138.7 175 46.9
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 1.3e-30 137.1 134 53.7
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 2.2e-30 136.3 171 50.3
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 2.2e-30 136.3 175 45.7
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 2.9e-30 136.0 116 59.5
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.9e-30 136.0 80 77.5
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 4.9e-30 135.2 125 53.6
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 8.4e-30 134.4 177 43.5
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 8.4e-30 134.4 125 53.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 1.1e-29 134.0 116 58.6
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 1.1e-29 134.0 131 52.7
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 1.1e-29 134.0 125 53.6
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.4e-29 133.7 178 46.1
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 1.4e-29 133.7 116 56.9
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 1.4e-29 133.7 116 56.9
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 2.4e-29 132.9 179 45.3
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 3.2e-29 132.5 117 56.4
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 3.2e-29 132.5 121 56.2
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 3.2e-29 132.5 104 60.6
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 3.2e-29 132.5 123 53.7
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 7.1e-29 131.3 79 74.7
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 9.3e-29 131.0 177 42.4
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 1.6e-28 130.2 177 44.6
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 3.5e-28 129.0 91 67.0
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.5e-28 129.0 91 67.0
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.5e-28 129.0 91 67.0
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 3.5e-28 129.0 65 86.2
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 7.9e-28 127.9 91 67.0
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 1.0e-27 127.5 174 43.7
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.0e-27 127.5 91 65.9
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.3e-27 126.3 91 65.9
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 6.7e-27 124.8 147 44.9
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 1.1e-26 124.0 146 45.9
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.3e-25 120.6 86 66.3
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 2.8e-25 119.4 102 54.9
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 1.4e-24 117.1 74 66.2
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 3.1e-24 115.9 76 63.2
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 5.3e-24 115.2 76 63.2
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 9.0e-24 114.4 94 61.7
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 3.8e-22 109.0 62 71.0
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.1e-21 107.5 87 56.3
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 2.7e-20 102.8 67 65.7
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 3.0e-19 99.4 88 51.1
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 6.7e-19 98.2 120 44.2
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.6e-17 93.6 102 45.1
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 4.8e-17 92.0 68 58.8
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.2e-17 91.7 113 46.0
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.5e-15 87.0 119 38.7
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 5.8e-15 85.1 77 55.8
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 1.4e-13 80.5 68 50.0
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.2e-13 79.0 92 43.5
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.0e-11 74.3 113 42.5
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 1.3e-11 73.9 102 39.2
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.3e-11 73.2 147 34.7
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 6.9e-08 61.6 95 37.9
MD13G1049900 Malus domestica HOM05D002826 ORTHO05D003105 1.7e-06 57.0 61 41.0
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 2.2e-06 56.6 60 40.0
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 2.9e-06 56.2 50 44.0
MD16G1050900 Malus domestica HOM05D002826 ORTHO05D003105 2.9e-06 56.2 60 41.7
Gohir.D12G175900 Gossypium hirsutum HOM05D002826 ORTHO05D003105 5.0e-06 55.5 98 33.7
Gorai.008G188300 Gossypium raimondii HOM05D002826 ORTHO05D003105 5.0e-06 55.5 98 33.7
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 6.5e-06 55.1 50 44.0
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 6.5e-06 55.1 50 44.0
FvH4_4g28420 Fragaria vesca HOM05D002826 ORTHO05D003105 6.5e-06 55.1 50 46.0
FAN07G1210 Fragaria x ananassa HOM05D002826 ORTHO05D003105 6.5e-06 55.1 50 46.0
FAN12G4176 Fragaria x ananassa HOM05D002826 ORTHO05D003105 6.5e-06 55.1 50 46.0
FAN22G0168 Fragaria x ananassa HOM05D002826 ORTHO05D003105 6.5e-06 55.1 50 46.0
RcHm_v2.0_Chr4g0436371 Rosa chinensis HOM05D002826 ORTHO05D003105 6.5e-06 55.1 50 46.0
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 6.5e-06 55.1 54 38.9
Manes.14G095500 Manihot esculenta HOM05D002826 ORTHO05D003105 8.5e-06 54.7 60 40.0


User provided reference genes

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