Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 5.9e-189 664.1 342 100.0
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.2e-186 656.4 345 98.6
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 3.5e-181 638.3 347 95.1
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 9.8e-152 540.4 355 79.2
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 2.3e-140 502.7 356 75.8
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 3.4e-136 488.8 336 79.2
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.3e-114 417.2 348 64.7
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 2.2e-111 406.4 340 65.3
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.2e-110 402.1 345 64.9
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.3e-108 396.4 343 61.2
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 5.6e-107 391.7 352 62.2
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 7.4e-107 391.3 353 61.8
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 7.4e-107 391.3 352 62.2
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 9.0e-105 384.4 341 59.2
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 2.0e-104 383.3 343 59.8
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.3e-103 380.6 357 57.7
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 2.9e-103 379.4 333 61.3
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 8.4e-103 377.9 353 58.4
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.1e-102 377.5 332 61.7
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.1e-102 377.5 332 61.7
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 1.4e-102 377.1 332 59.9
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 2.5e-102 376.3 335 62.4
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 2.5e-102 376.3 337 60.8
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 7.1e-102 374.8 354 57.6
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 9.3e-102 374.4 350 62.3
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.2e-101 374.0 343 59.2
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.2e-101 374.0 343 59.2
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.2e-101 374.0 343 59.2
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 1.2e-101 374.0 343 59.2
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.6e-101 373.6 344 59.3
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.1e-101 373.2 373 56.8
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.1e-101 373.2 373 56.8
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 2.7e-101 372.9 339 59.6
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 4.6e-101 372.1 333 63.1
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 4.6e-101 372.1 347 60.2
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 1.3e-100 370.5 349 58.7
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 1.8e-100 370.2 343 58.3
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 3.0e-100 369.4 348 59.5
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 5.1e-100 368.6 342 59.4
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 5.1e-100 368.6 366 56.0
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.1e-99 367.5 342 59.6
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 1.5e-99 367.1 334 57.2
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.5e-99 367.1 358 61.2
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.5e-99 367.1 338 59.8
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 2.5e-99 366.3 337 57.9
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 2.5e-99 366.3 336 58.6
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 3.3e-99 365.9 335 58.5
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 5.7e-99 365.2 329 61.7
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 7.4e-99 364.8 343 58.6
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 7.4e-99 364.8 351 57.0
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 9.7e-99 364.4 331 58.0
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 1.6e-98 363.6 339 57.5
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 2.2e-98 363.2 358 60.6
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 2.8e-98 362.8 352 56.8
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 2.8e-98 362.8 350 56.0
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 2.8e-98 362.8 351 59.5
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 1.8e-97 360.1 342 58.8
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 2.4e-97 359.8 351 56.7
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 3.1e-97 359.4 334 58.4
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.1e-97 359.4 337 59.3
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 6.9e-97 358.2 345 58.0
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 2.6e-96 356.3 341 57.8
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 4.5e-96 355.5 334 57.5
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 5.9e-96 355.1 339 58.1
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 5.9e-96 355.1 332 59.3
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.0e-95 354.4 339 57.2
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.0e-95 354.4 333 55.9
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.0e-95 354.4 330 58.2
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.3e-95 354.0 330 58.5
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 1.7e-95 353.6 346 54.9
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 1.7e-95 353.6 352 55.4
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 3.8e-95 352.4 351 56.1
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 8.5e-95 351.3 333 57.1
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.9e-94 350.1 333 55.3
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.1e-93 346.7 372 54.8
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 6.1e-93 345.1 352 56.0
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 1.0e-92 344.4 332 58.1
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 3.9e-92 342.4 331 58.0
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 5.1e-92 342.0 348 54.0
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 6.7e-92 341.7 345 53.9
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 1.5e-91 340.5 311 60.5
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 5.7e-91 338.6 337 54.0
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 7.4e-91 338.2 350 53.1
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 1.7e-90 337.0 344 53.2
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 1.7e-90 337.0 344 53.2
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 2.8e-90 336.3 349 54.7
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 5.3e-89 332.0 331 56.2
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 6.9e-89 331.6 342 52.9
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 2.2e-87 326.6 263 65.0
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.6e-85 320.5 345 51.9
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.0e-84 317.8 321 54.2
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 9.7e-83 311.2 350 52.3
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.2e-82 310.1 325 53.2
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 2.6e-80 303.1 347 51.0
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 7.7e-80 301.6 331 49.2
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 3.9e-76 289.3 343 49.9
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 8.8e-76 288.1 341 48.1
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 3.3e-75 286.2 346 47.4
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.1e-69 266.9 192 71.9
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.8e-65 253.8 209 62.2
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 8.5e-63 245.0 328 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 1.5e-62 244.2 336 41.7
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 4.2e-62 242.7 339 42.8
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 1.0e-60 238.0 180 63.9
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 5.7e-59 232.3 350 40.6
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 7.7e-56 221.9 130 80.0
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 5.0e-55 219.2 311 45.0
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 6.8e-52 208.8 210 53.8
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 8.9e-52 208.4 330 43.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 3.1e-49 199.9 369 34.7
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.6e-48 197.6 247 48.2
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 1.0e-47 194.9 129 71.3
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.5e-46 190.3 329 38.9
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 2.3e-44 183.7 324 41.0
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 2.9e-42 176.8 322 38.8
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 1.3e-39 167.9 357 32.8
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 4.0e-36 156.4 322 37.9
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 7.5e-35 152.1 211 47.4
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 9.8e-35 151.8 334 33.2
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.6e-32 144.4 258 39.9
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.5e-30 137.1 86 75.6
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 6.8e-28 129.0 134 56.0
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 2.0e-27 127.5 329 27.7
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 7.1e-25 119.0 85 63.5
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 6.0e-24 115.9 149 47.7
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 6.2e-21 105.9 62 77.4
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.7e-18 97.8 99 54.5
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 2.4e-17 94.0 139 41.7
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 5.4e-17 92.8 134 33.6
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 3.0e-15 87.0 60 66.7
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 5.4e-09 66.2 131 39.7
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 1.0e-07 62.0 110 30.0
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.1e-06 58.5 58 55.2
MCO14G569 Micromonas commoda HOM05D033910 ORTHO05D034414 3.3e-06 57.0 189 22.2


User provided reference genes

Program Settings