Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 0.0e+00 1291.6 665 100.0
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 0.0e+00 1272.7 665 98.2
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 0.0e+00 1219.5 664 94.4
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.6e-261 904.0 668 74.9
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.5e-249 866.3 668 71.7
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 3.7e-211 738.8 673 63.4
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.8e-211 738.4 682 62.5
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.2e-207 725.7 704 59.4
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 7.5e-172 608.2 657 55.4
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.8e-170 603.6 617 57.4
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 6.5e-168 595.1 649 55.0
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 6.5e-168 595.1 649 55.0
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 2.4e-162 576.6 617 56.2
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 8.3e-155 551.6 584 55.1
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 1.6e-153 547.4 585 54.5
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 6.6e-152 542.0 650 51.2
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 3.3e-151 539.7 665 49.6
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 7.3e-151 538.5 631 51.3
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-150 537.7 624 53.0
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 6.1e-150 535.4 624 52.9
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 1.4e-149 534.3 617 51.1
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.3e-149 533.5 619 52.5
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.1e-149 533.1 582 53.4
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.1e-149 533.1 620 53.9
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 4.0e-149 532.7 578 55.4
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.2e-148 531.2 583 54.5
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 2.6e-148 530.0 601 53.7
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.4e-148 529.6 583 54.4
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.9e-147 526.6 590 52.9
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 3.7e-147 526.2 658 50.8
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 4.9e-147 525.8 580 53.8
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.4e-147 525.4 582 53.1
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.2e-146 523.1 609 53.7
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 7.0e-146 521.9 585 53.5
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 9.2e-146 521.5 645 50.9
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.7e-145 520.0 578 53.1
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 3.5e-145 519.6 697 49.1
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 4.6e-145 519.2 624 50.8
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.0e-144 516.5 640 49.7
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.0e-144 516.5 622 50.8
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.0e-144 515.8 601 53.4
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 6.6e-144 515.4 594 53.5
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 7.3e-143 511.9 597 51.6
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.6e-142 510.8 663 47.4
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 4.4e-140 502.7 617 50.4
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 5.8e-140 502.3 641 50.7
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.7e-139 500.7 644 48.8
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.2e-139 500.4 633 49.8
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.9e-139 499.2 644 49.1
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 7.0e-138 495.4 586 50.7
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 7.0e-138 495.4 585 50.4
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.1e-137 493.8 617 49.4
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.0e-136 491.5 656 48.2
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.3e-136 491.1 649 47.6
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 3.9e-136 489.6 617 48.6
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 5.1e-136 489.2 580 50.5
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 5.6e-135 485.7 587 50.8
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 9.5e-135 485.0 682 45.6
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 1.2e-134 484.6 614 48.2
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.1e-134 483.8 660 46.8
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.4e-132 476.5 580 51.0
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 1.7e-131 474.2 581 49.7
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 6.4e-131 472.2 648 46.0
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 1.4e-130 471.1 583 50.3
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 3.2e-130 469.9 655 46.7
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 7.1e-130 468.8 642 46.3
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 1.6e-129 467.6 579 49.2
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.7e-129 466.8 584 47.9
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 1.3e-128 464.5 621 48.0
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 3.0e-128 463.4 625 46.2
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.2e-126 458.0 581 47.7
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.4e-125 453.8 554 49.8
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.0e-125 453.0 612 46.7
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.0e-124 450.7 591 47.7
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 3.4e-124 449.9 615 46.8
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.9e-122 444.1 594 47.3
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.9e-122 444.1 676 43.6
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 2.4e-122 443.7 623 46.1
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.4e-122 443.7 686 43.9
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 3.2e-122 443.4 722 41.3
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.3e-120 437.2 642 44.9
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.3e-118 431.4 661 44.9
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 2.8e-118 430.3 628 46.0
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.9e-115 420.2 638 43.6
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.1e-114 418.3 607 44.8
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 7.1e-114 415.6 505 50.9
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.6e-113 414.5 617 44.2
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 6.0e-113 412.5 654 43.9
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 6.9e-109 399.1 540 46.3
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 9.0e-109 398.7 581 45.3
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 2.9e-107 393.7 549 45.9
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 6.4e-107 392.5 646 41.8
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 3.2e-106 390.2 603 42.6
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.2e-105 388.3 546 46.0
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 2.1e-105 387.5 544 45.2
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 3.7e-102 376.7 529 46.1
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 4.8e-102 376.3 568 44.2
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.5e-100 371.3 587 44.1
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.6e-100 370.5 540 45.2
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 8.4e-99 365.5 602 42.2
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.4e-98 364.8 553 43.9
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.4e-98 364.8 553 43.9
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 7.4e-95 352.4 588 43.4
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 9.0e-93 345.5 520 41.7
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 3.7e-86 323.6 535 42.1
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 5.9e-84 316.2 749 35.4
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 7.7e-84 315.8 424 49.5
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 7.7e-84 315.8 523 41.5
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 2.7e-81 307.4 495 42.2
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 6.1e-81 306.2 456 43.9
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 9.7e-79 298.9 210 69.0
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 6.3e-78 296.2 537 40.0
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 1.7e-75 288.1 189 75.7
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 8.5e-67 259.2 436 41.1
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.2e-66 257.3 261 51.7
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.7e-62 245.0 499 37.1
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 4.5e-60 236.9 247 52.2
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.9e-59 234.2 604 35.1
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 9.8e-47 192.6 218 46.3
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.7e-46 191.8 272 39.3
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 3.6e-41 174.1 212 41.5
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 1.0e-40 172.6 377 35.0
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.8e-40 171.8 467 31.0
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 9.2e-37 159.5 272 41.2
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 5.9e-36 156.8 178 55.6
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.7e-35 155.2 208 45.2
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 2.1e-33 148.3 87 81.6
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 1.4e-32 145.6 140 59.3
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 2.0e-31 141.7 148 56.1
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 5.8e-31 140.2 126 61.9
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 7.5e-31 139.8 87 78.2
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 2.2e-30 138.3 109 65.1
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.9e-26 125.2 87 69.0
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 2.3e-24 118.2 128 50.0
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 2.9e-22 111.3 74 67.6
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.5e-20 104.4 123 54.5
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 5.1e-19 100.5 70 75.7
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 4.7e-17 94.0 429 26.1
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 3.7e-14 84.3 107 51.4
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 4.1e-13 80.9 73 47.9
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 9.2e-13 79.7 72 50.0
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 7.8e-12 76.6 62 62.9
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 2.3e-11 75.1 75 57.3
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.5e-10 72.4 45 77.8
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 6.2e-09 67.0 42 71.4
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-08 66.2 134 33.6
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 8.9e-08 63.2 48 66.7
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 8.9e-08 63.2 102 34.3
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 2.6e-07 61.6 86 41.9


User provided reference genes

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