Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g052600.4 Solanum lycopersicum HOM05D003256 ORTHO05D005659 9.1e-105 383.6 203 100.0
Sopen05g031130 Solanum pennellii HOM05D003256 ORTHO05D005659 2.0e-83 312.8 165 98.8
PGSC0003DMG400027125 Solanum tuberosum HOM05D003256 ORTHO05D005659 1.4e-81 306.6 166 97.6
CAN.G1158.6 Capsicum annuum HOM05D003256 ORTHO05D005659 4.1e-81 305.1 165 95.8
Nitab4.5_0002100g0150 Nicotiana tabacum HOM05D003256 ORTHO05D005659 2.8e-77 292.4 165 92.1
Nitab4.5_0000369g0010 Nicotiana tabacum HOM05D003256 ORTHO05D005659 1.8e-76 289.7 165 91.5
Nitab4.5_0000278g0170 Nicotiana tabacum HOM05D003256 ORTHO05D005659 3.3e-70 268.9 166 86.1
Migut.F01436 Erythranthe guttata HOM05D003256 ORTHO05D005659 1.2e-69 266.9 166 84.3
MSTRG.8307 Avicennia marina HOM05D003256 ORTHO05D005659 2.1e-69 266.2 165 82.4
Lj1C950T1 Lonicera japonica HOM05D003256 ORTHO05D005659 4.7e-69 265.0 166 83.1
Duzib106G0685 Durio zibethinus HOM05D003256 ORTHO05D005659 1.5e-67 260.0 165 83.6
Nitab4.5_0015171g0010 Nicotiana tabacum HOM05D003256 ORTHO05D005659 3.4e-67 258.8 166 84.3
SalBow6G0602 Salvia bowleyana HOM05D003256 ORTHO05D005659 4.4e-67 258.5 168 79.8
Peaxi162Scf00401g00023 Petunia axillaris HOM05D003256 ORTHO05D005659 5.8e-67 258.1 165 82.4
CiPaw.01G295400 Carya illinoinensis HOM05D003256 ORTHO05D005659 7.6e-67 257.7 169 79.9
Haze_17178 Corylus avellana HOM05D003256 ORTHO05D005659 7.6e-67 257.7 165 82.4
Lsat_1_v5_gn_2_122641 Lactuca sativa HOM05D003256 ORTHO05D005659 7.6e-67 257.7 165 80.0
GSVIVG01016373001 Vitis vinifera HOM05D003256 ORTHO05D005659 1.7e-66 256.5 165 81.2
Cfa001372 Carpinus fangiana HOM05D003256 ORTHO05D005659 2.9e-66 255.8 165 81.8
Peaxi162Scf00957g00328 Petunia axillaris HOM05D003256 ORTHO05D005659 3.7e-66 255.4 165 84.8
Cpa.g.sc19.221 Carica papaya HOM05D003256 ORTHO05D005659 8.4e-66 254.2 167 80.8
DCAR_011785 Daucus carota HOM05D003256 ORTHO05D005659 8.4e-66 254.2 162 83.3
CANSAT80G0910 Cannabis sativa HOM05D003256 ORTHO05D005659 1.1e-65 253.8 165 82.4
Thecc.10G027000 Theobroma cacao HOM05D003256 ORTHO05D005659 3.2e-65 252.3 165 81.2
FAN01G1344 Fragaria x ananassa HOM05D003256 ORTHO05D005659 4.1e-65 251.9 165 79.4
FAN03G3417 Fragaria x ananassa HOM05D003256 ORTHO05D005659 4.1e-65 251.9 165 79.4
Ciclev10031765m.g Citrus clementina HOM05D003256 ORTHO05D005659 5.4e-65 251.5 165 80.0
Duzib114G1030 Durio zibethinus HOM05D003256 ORTHO05D005659 5.4e-65 251.5 165 80.6
Potri.010G193300 Populus trichocarpa HOM05D003256 ORTHO05D005659 5.4e-65 251.5 165 80.0
TWI73G0749 Tripterygium wilfordii HOM05D003256 ORTHO05D005659 5.4e-65 251.5 166 82.5
CSS0032234 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 7.1e-65 251.1 166 80.1
CSS0038881 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 7.1e-65 251.1 166 80.1
FvH4_7g23960 Fragaria vesca HOM05D003256 ORTHO05D005659 9.2e-65 250.8 165 78.8
FAN06G1448 Fragaria x ananassa HOM05D003256 ORTHO05D005659 9.2e-65 250.8 165 78.8
Oeu038996.2 Olea europaea HOM05D003256 ORTHO05D005659 9.2e-65 250.8 165 81.2
Manes.07G124800 Manihot esculenta HOM05D003256 ORTHO05D005659 1.2e-64 250.4 165 80.0
Cc02_g06960 Coffea canephora HOM05D003256 ORTHO05D005659 3.5e-64 248.8 165 80.0
Aqoxy1G00711 Aquilegia oxysepala HOM05D003256 ORTHO05D005659 7.8e-64 247.7 165 80.0
TAR623G1127 Trochodendron aralioides HOM05D003256 ORTHO05D005659 1.0e-63 247.3 166 81.3
Gorai.011G279400 Gossypium raimondii HOM05D003256 ORTHO05D005659 1.3e-63 246.9 166 79.5
Sabra08G0047000 Salix brachista HOM05D003256 ORTHO05D005659 1.3e-63 246.9 165 78.8
SalBow6G6740 Salvia bowleyana HOM05D003256 ORTHO05D005659 1.3e-63 246.9 168 77.4
Gohir.D10G243000 Gossypium hirsutum HOM05D003256 ORTHO05D005659 2.3e-63 246.1 166 78.9
Oeu006655.1 Olea europaea HOM05D003256 ORTHO05D005659 2.3e-63 246.1 169 78.1
Manes.10G018100 Manihot esculenta HOM05D003256 ORTHO05D005659 1.1e-62 243.8 165 78.2
Rhsim09G0171900 Rhododendron simsii HOM05D003256 ORTHO05D005659 1.1e-62 243.8 166 77.7
Gohir.A10G229000 Gossypium hirsutum HOM05D003256 ORTHO05D005659 1.9e-62 243.0 166 78.3
Eucgr.J00242 Eucalyptus grandis HOM05D003256 ORTHO05D005659 2.5e-62 242.7 166 77.7
RcHm_v2.0_Chr1g0369301 Rosa chinensis HOM05D003256 ORTHO05D005659 2.5e-62 242.7 165 77.6
HanXRQChr14g0459921 Helianthus annuus HOM05D003256 ORTHO05D005659 3.3e-62 242.3 165 78.2
SGA_v2.0_scaffold343G49450 Striga asiatica HOM05D003256 ORTHO05D005659 5.6e-62 241.5 165 76.4
Atru.chr12.249 Acer truncatum HOM05D003256 ORTHO05D005659 9.6e-62 240.7 166 77.1
Prupe.2G245700 Prunus persica HOM05D003256 ORTHO05D005659 9.6e-62 240.7 165 75.2
Dinv20951 Davidia involucrata HOM05D003256 ORTHO05D005659 1.2e-61 240.4 165 77.6
Dinv20992 Davidia involucrata HOM05D003256 ORTHO05D005659 1.2e-61 240.4 165 77.6
ECA238G0506 Erigeron canadensis HOM05D003256 ORTHO05D005659 1.6e-61 240.0 167 76.0
Nn2g11368 Nelumbo nucifera HOM05D003256 ORTHO05D005659 2.1e-61 239.6 166 79.5
MELO3C025149.2 Cucumis melo HOM05D003256 ORTHO05D005659 1.4e-60 236.9 166 77.7
vmacro10065 Vaccinium macrocarpon HOM05D003256 ORTHO05D005659 2.4e-60 236.1 166 75.3
MD01G1146300 Malus domestica HOM05D003256 ORTHO05D005659 5.2e-60 235.0 167 73.7
CsaV3_5G008880 Cucumis sativus L. HOM05D003256 ORTHO05D005659 6.8e-60 234.6 166 77.1
FvH4_3g15380 Fragaria vesca HOM05D003256 ORTHO05D005659 1.5e-59 233.4 165 73.9
FAN11G2434 Fragaria x ananassa HOM05D003256 ORTHO05D005659 1.5e-59 233.4 165 73.9
Sed0004122 Sechium edule HOM05D003256 ORTHO05D005659 1.5e-59 233.4 166 77.1
MD10G1205000 Malus domestica HOM05D003256 ORTHO05D005659 3.4e-59 232.3 165 73.9
ClCG07G003920 Citrullus lanatus HOM05D003256 ORTHO05D005659 4.4e-59 231.9 166 77.1
VMungo1383G2733 Vigna mungo HOM05D003256 ORTHO05D005659 5.8e-59 231.5 165 75.2
EL10Ac2g04782 Beta vulgaris HOM05D003256 ORTHO05D005659 9.9e-59 230.7 165 72.7
CDE04G0991 Ceratophyllum demersum HOM05D003256 ORTHO05D005659 9.9e-59 230.7 166 73.5
FAN16G1030 Fragaria x ananassa HOM05D003256 ORTHO05D005659 9.9e-59 230.7 165 73.3
RcHm_v2.0_Chr5g0025831 Rosa chinensis HOM05D003256 ORTHO05D005659 9.9e-59 230.7 165 73.3
Prupe.4G136700 Prunus persica HOM05D003256 ORTHO05D005659 1.7e-58 229.9 165 75.2
FAN25G2279 Fragaria x ananassa HOM05D003256 ORTHO05D005659 2.2e-58 229.6 165 72.7
CDE02G1261 Ceratophyllum demersum HOM05D003256 ORTHO05D005659 4.9e-58 228.4 165 70.9
COL.COLO4_25669 Corchorus olitorius HOM05D003256 ORTHO05D005659 4.9e-58 228.4 166 75.9
Ca_17142_v3 Cicer arietinum L. HOM05D003256 ORTHO05D005659 6.4e-58 228.0 165 72.7
MD05G1223500 Malus domestica HOM05D003256 ORTHO05D005659 6.4e-58 228.0 165 73.9
AUR62012202 Chenopodium quinoa HOM05D003256 ORTHO05D005659 8.4e-58 227.6 166 72.3
AUR62022835 Chenopodium quinoa HOM05D003256 ORTHO05D005659 1.1e-57 227.3 166 72.3
Glyma.18G030400 Glycine max HOM05D003256 ORTHO05D005659 1.1e-57 227.3 165 73.9
A04p04210 Brassica napus HOM05D003256 ORTHO05D005659 1.9e-57 226.5 167 73.7
BraA04t16137Z Brassica rapa HOM05D003256 ORTHO05D005659 1.9e-57 226.5 167 73.7
Glyma.11G226900 Glycine max HOM05D003256 ORTHO05D005659 1.9e-57 226.5 165 73.3
PGR142G2386 Punica granatum HOM05D003256 ORTHO05D005659 1.9e-57 226.5 166 73.5
Ah.16g103070 Amaranthus hybridus HOM05D003256 ORTHO05D005659 2.4e-57 226.1 152 77.0
Psat5g127280 Pisum sativum HOM05D003256 ORTHO05D005659 3.2e-57 225.7 165 72.7
Hund13828 Selenicereus undatus HOM05D003256 ORTHO05D005659 3.2e-57 225.7 166 71.1
BcaC02g09791 Brassica carinata HOM05D003256 ORTHO05D005659 5.4e-57 224.9 167 73.1
CSS0038355 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 5.4e-57 224.9 165 73.3
CSS0041794 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D005659 5.4e-57 224.9 165 73.3
HanXRQChr07g0202701 Helianthus annuus HOM05D003256 ORTHO05D005659 5.4e-57 224.9 165 71.5
Phvul.001G240200 Phaseolus vulgaris HOM05D003256 ORTHO05D005659 9.3e-57 224.2 165 72.7
FAN21G0309 Fragaria x ananassa HOM05D003256 ORTHO05D005659 1.6e-56 223.4 165 70.9
MD07G1213200 Malus domestica HOM05D003256 ORTHO05D005659 1.6e-56 223.4 171 70.8
Sp5g06680 Schrenkiella parvula HOM05D003256 ORTHO05D005659 2.1e-56 223.0 169 73.4
C04p36570 Brassica napus HOM05D003256 ORTHO05D005659 2.7e-56 222.6 167 72.5
TPR.G29802 Trifolium pratense HOM05D003256 ORTHO05D005659 2.7e-56 222.6 165 70.9
BcaB01g00060 Brassica carinata HOM05D003256 ORTHO05D005659 4.6e-56 221.9 167 71.9
BcaB02g08398 Brassica carinata HOM05D003256 ORTHO05D005659 6.0e-56 221.5 167 73.1
Potri.008G063800 Populus trichocarpa HOM05D003256 ORTHO05D005659 6.0e-56 221.5 125 88.0
C08p31130 Brassica napus HOM05D003256 ORTHO05D005659 1.0e-55 220.7 167 71.9
BolC4t25140H Brassica oleracea HOM05D003256 ORTHO05D005659 1.3e-55 220.3 169 73.4
Lalb_Chr15g0084341 Lupinus albus HOM05D003256 ORTHO05D005659 1.3e-55 220.3 165 69.7
A09p48800 Brassica napus HOM05D003256 ORTHO05D005659 3.0e-55 219.2 167 72.5
BraA09t40333Z Brassica rapa HOM05D003256 ORTHO05D005659 3.0e-55 219.2 167 72.5
Medtr3g070100 Medicago truncatula HOM05D003256 ORTHO05D005659 5.1e-55 218.4 165 70.9
Thhalv10010434m.g Eutrema salsugineum HOM05D003256 ORTHO05D005659 8.7e-55 217.6 154 74.7
AL5G37090 Arabidopsis lyrata HOM05D003256 ORTHO05D005659 1.5e-54 216.9 167 69.5
CARHR165910 Cardamine hirsuta HOM05D003256 ORTHO05D005659 1.9e-54 216.5 167 70.7
THA.LOC104824303 Tarenaya hassleriana HOM05D003256 ORTHO05D005659 1.9e-54 216.5 173 67.6
AT3G55800 Arabidopsis thaliana HOM05D003256 ORTHO05D005659 2.5e-54 216.1 167 69.5
BolC8t50734H Brassica oleracea HOM05D003256 ORTHO05D005659 3.3e-54 215.7 168 70.8
Carub.0005s2258 Capsella rubella HOM05D003256 ORTHO05D005659 4.3e-54 215.3 167 69.5
BraA07t29936Z Brassica rapa HOM05D003256 ORTHO05D005659 2.8e-53 212.6 169 71.0
PSO801G0459 Papaver somniferum HOM05D003256 ORTHO05D005659 2.8e-53 212.6 166 70.5
BolC6t37492H Brassica oleracea HOM05D003256 ORTHO05D005659 4.8e-53 211.8 154 71.4
arahy.Tifrunner.gnm1.ann1.EZF9IN Arachis hypogaea HOM05D003256 ORTHO05D005659 8.1e-53 211.1 165 69.1
A07p22680 Brassica napus HOM05D003256 ORTHO05D005659 1.1e-52 210.7 167 69.5
Aa31LG10G10780 Aethionema arabicum HOM05D003256 ORTHO05D005659 1.4e-52 210.3 171 69.6
arahy.Tifrunner.gnm1.ann1.M6YT3U Arachis hypogaea HOM05D003256 ORTHO05D005659 1.4e-52 210.3 165 69.1
PSO339G4197 Papaver somniferum HOM05D003256 ORTHO05D005659 2.4e-52 209.5 166 69.3
Sed0001843 Sechium edule HOM05D003256 ORTHO05D005659 2.4e-52 209.5 168 70.8
Actinidia00932 Actinidia chinensis HOM05D003256 ORTHO05D005659 9.9e-51 204.1 165 69.1
unitig_52.g16837 Utricularia gibba HOM05D003256 ORTHO05D005659 3.8e-50 202.2 145 73.8
unitig_62.g23937 Utricularia gibba HOM05D003256 ORTHO05D005659 1.4e-49 200.3 176 65.9
ATR0564G033 Amborella trichopoda HOM05D003256 ORTHO05D005659 7.1e-49 198.0 172 64.5
MBI05_g03456_MAGBIO Magnolia biondii HOM05D003256 ORTHO05D005659 3.5e-48 195.7 145 73.1
HPP92_015335 Vanilla planifolia HOM05D003256 ORTHO05D005659 1.3e-45 187.2 136 74.3
HPP92_015300 Vanilla planifolia HOM05D003256 ORTHO05D005659 1.6e-45 186.8 128 75.8
Os04g0234600 Oryza sativa ssp. japonica HOM05D003256 ORTHO05D005659 1.8e-44 183.3 147 66.7
BcaC08g44752 Brassica carinata HOM05D003256 ORTHO05D005659 6.9e-44 181.4 165 63.0
Actinidia13915 Actinidia chinensis HOM05D003256 ORTHO05D005659 2.0e-43 179.9 173 61.8
Zm00001eb147750 Zea mays HOM05D003256 ORTHO05D005659 2.9e-42 176.0 147 65.3
BcaB02g07674 Brassica carinata HOM05D003256 ORTHO05D005659 3.5e-40 169.1 167 61.7
Pp3c5_5150 Physcomitrium patens HOM05D003256 ORTHO05D005659 6.0e-40 168.3 123 71.5
Pp3c6_22140 Physcomitrium patens HOM05D003256 ORTHO05D005659 5.1e-39 165.2 122 68.9
C06p23180 Brassica napus HOM05D003256 ORTHO05D005659 4.0e-36 155.6 165 58.2
Lj6g0015506 Lotus japonicus HOM05D003256 ORTHO05D005659 1.5e-35 153.7 150 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1456 Anthoceros agrestis HOM05D003256 ORTHO05D005659 2.6e-35 152.9 178 52.8
SMO146G0041 Selaginella moellendorffii HOM05D003256 ORTHO05D005659 7.6e-35 151.4 93 76.3
CBR_g48544 Chara braunii HOM05D003256 ORTHO05D005659 1.1e-33 147.5 104 72.1
Cre03.g185550 Chlamydomonas reinhardtii HOM05D003256 ORTHO05D005659 3.5e-32 142.5 102 69.6
Mapoly0024s0048 Marchantia polymorpha HOM05D003256 ORTHO05D005659 1.9e-30 136.7 153 51.6
Sc11g0007310 Simmondsia chinensis HOM05D003256 ORTHO05D005659 7.4e-30 134.8 68 91.2
Actinidia25355 Actinidia chinensis HOM05D003256 ORTHO05D005659 1.4e-25 120.6 74 81.1
Dinv34427 Davidia involucrata HOM05D003256 ORTHO05D005659 3.9e-23 112.5 165 46.7


User provided reference genes

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