Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 7.7e-225 783.5 394 100.0
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 6.1e-198 694.1 353 98.6
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.3e-187 659.8 345 95.7
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 2.4e-178 629.0 345 90.4
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.6e-167 591.3 345 87.8
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.3e-167 590.9 345 87.5
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 6.9e-157 557.8 345 80.0
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.4e-156 555.4 302 89.4
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.7e-153 545.8 345 79.1
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.1e-151 540.4 334 80.2
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.9e-151 539.7 355 76.6
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.6e-151 538.1 367 75.5
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 4.8e-150 535.0 334 79.9
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 4.0e-149 531.9 340 76.5
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 7.6e-148 527.7 330 76.7
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.6e-145 518.5 333 75.1
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 8.7e-144 514.2 334 73.7
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 4.3e-143 511.9 330 75.2
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 2.8e-142 509.2 344 71.2
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.2e-140 503.8 344 70.9
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.0e-140 503.1 344 72.1
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 3.4e-140 502.3 332 72.6
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 5.8e-140 501.5 335 71.9
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.3e-139 500.4 367 68.9
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.9e-139 498.4 334 72.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 6.4e-139 498.0 330 73.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 6.4e-139 498.0 331 74.6
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 8.4e-139 497.7 330 72.1
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.1e-138 497.3 339 72.6
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 2.4e-138 496.1 317 74.1
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.2e-138 495.7 348 69.3
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 9.3e-138 494.2 336 71.4
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.2e-137 493.8 340 70.9
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.6e-137 493.4 344 70.6
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 2.7e-137 492.7 330 73.0
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.6e-137 491.9 334 71.6
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 6.0e-137 491.5 330 71.2
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.0e-136 490.7 321 74.1
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 2.3e-136 489.6 335 70.4
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 3.0e-136 489.2 345 68.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 3.9e-136 488.8 334 72.8
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 3.9e-136 488.8 340 70.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.9e-136 488.8 330 72.4
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 5.1e-136 488.4 320 73.1
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.9e-135 486.5 330 72.1
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 2.5e-135 486.1 336 69.6
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.3e-135 485.7 336 69.6
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.3e-135 485.7 336 69.6
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.4e-135 484.6 336 69.3
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 9.6e-135 484.2 344 70.1
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 9.6e-135 484.2 331 71.9
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.3e-134 483.8 336 67.9
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.3e-134 483.8 336 67.9
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.3e-134 483.8 334 71.3
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.6e-134 483.4 334 70.1
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.7e-134 482.3 336 67.3
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 8.2e-134 481.1 321 71.7
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.1e-133 480.7 340 67.1
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.8e-133 479.9 340 67.4
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.1e-133 479.2 336 68.8
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 4.0e-133 478.8 331 68.3
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.2e-132 477.2 340 68.2
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.5e-132 476.9 340 66.8
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 2.0e-132 476.5 334 69.2
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.6e-132 476.1 330 70.9
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.6e-132 476.1 337 69.1
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.4e-132 475.7 340 67.6
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 5.8e-132 474.9 332 69.3
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.6e-132 474.6 340 67.6
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.0e-131 474.2 339 69.0
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.3e-131 473.8 302 75.2
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.2e-131 473.0 333 69.7
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.9e-131 472.6 338 67.8
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.9e-130 469.9 320 70.3
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.9e-130 469.9 321 70.7
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 5.5e-130 468.4 360 65.0
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 7.1e-130 468.0 330 68.5
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 7.1e-130 468.0 334 68.0
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.2e-129 467.2 333 67.6
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.7e-129 466.1 341 66.6
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 2.7e-129 466.1 330 68.2
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.7e-129 466.1 411 58.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 3.5e-129 465.7 332 69.6
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 3.5e-129 465.7 346 66.8
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 4.6e-129 465.3 344 68.0
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.9e-129 464.5 344 67.7
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 7.9e-129 464.5 373 62.7
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.8e-128 463.4 344 66.6
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.8e-128 463.4 330 67.9
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.8e-128 463.4 330 67.6
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 8.7e-128 461.1 330 67.3
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 1.1e-127 460.7 330 66.7
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.5e-127 460.3 340 65.9
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 2.8e-126 456.1 335 66.6
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 4.1e-125 452.2 337 65.0
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 6.9e-125 451.4 330 65.8
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 9.0e-125 451.1 335 66.3
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 9.0e-125 451.1 335 66.3
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 9.0e-125 451.1 335 66.3
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-124 450.3 335 65.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.6e-124 449.5 335 65.1
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 7.6e-124 448.0 335 65.4
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.0e-123 447.6 335 66.3
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 2.9e-123 446.0 383 58.5
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 5.0e-123 445.3 335 66.0
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 5.0e-123 445.3 367 61.0
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.5e-123 444.5 275 76.7
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 8.5e-123 444.5 345 64.3
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 3.2e-122 442.6 335 65.7
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.2e-122 442.6 356 63.2
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.3e-122 441.0 317 67.5
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.8e-120 436.8 373 58.4
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-120 436.8 330 66.7
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 3.0e-120 436.0 333 64.3
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 6.7e-120 434.9 321 66.4
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.1e-119 434.1 339 63.7
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.3e-119 432.2 335 62.7
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 5.7e-119 431.8 340 63.5
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.3e-118 430.6 333 64.3
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.3e-118 430.6 316 66.5
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 3.1e-117 426.0 388 57.7
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.1e-117 425.6 333 63.1
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 4.1e-117 425.6 335 61.8
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 8.5e-115 417.9 314 64.0
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.2e-114 416.0 477 49.7
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 9.4e-114 414.5 336 61.3
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-113 413.7 253 77.9
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-113 413.7 253 77.9
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 2.3e-112 409.8 346 60.7
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.1e-111 407.5 342 59.9
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.3e-110 404.1 273 70.0
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.0e-108 396.7 342 58.8
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 8.0e-105 384.8 264 72.0
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.5e-103 380.6 275 66.2
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.8e-102 376.3 327 58.1
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 2.6e-95 353.2 296 60.1
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 3.7e-94 349.4 320 57.2
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.1e-89 332.0 339 52.8
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 6.1e-89 332.0 329 50.5
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 2.2e-86 323.6 327 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.1e-82 311.2 378 44.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.3e-82 309.7 321 48.0
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 8.3e-78 295.0 314 51.9
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 5.4e-77 292.4 268 52.6
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 5.6e-58 229.2 213 55.4
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 2.1e-57 227.3 163 66.9
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.1e-50 204.9 160 62.5
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 5.6e-42 176.0 327 34.6
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.3e-38 164.9 100 76.0
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.1e-37 161.8 106 68.9
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 3.1e-32 143.7 176 48.3
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.7e-30 137.9 111 64.0
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.9e-30 137.1 111 64.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 8.4e-30 135.6 113 55.8
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.4e-29 134.0 413 28.1
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.0e-27 127.1 86 65.1
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 5.3e-24 116.3 99 57.6
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.4e-21 108.2 113 57.5
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.8e-19 101.3 67 74.6
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 3.0e-19 100.5 119 50.4
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.9e-19 100.1 55 83.6
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.3e-18 97.1 69 66.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.0e-11 75.5 85 52.9
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 6.7e-11 72.8 74 50.0
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 8.7e-11 72.4 74 50.0
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.3e-10 70.5 60 58.3
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.4e-08 65.1 42 71.4
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 5.0e-06 56.6 59 40.7


User provided reference genes

Program Settings