Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g052460.3 Solanum lycopersicum HOM05D006653 ORTHO05D008346 9.6e-169 596.7 284 100.0
Sopen05g030990 Solanum pennellii HOM05D006653 ORTHO05D008346 4.5e-166 587.8 281 98.9
CAN.G203.2 Capsicum annuum HOM05D006653 ORTHO05D008346 5.3e-143 511.1 285 86.0
Nitab4.5_0000789g0140 Nicotiana tabacum HOM05D006653 ORTHO05D008346 3.9e-138 495.0 283 83.0
Nitab4.5_0003391g0090 Nicotiana tabacum HOM05D006653 ORTHO05D008346 8.2e-136 487.3 281 82.6
Peaxi162Scf01149g00326 Petunia axillaris HOM05D006653 ORTHO05D008346 1.9e-132 476.1 268 82.8
PGSC0003DMG400027171 Solanum tuberosum HOM05D006653 ORTHO05D008346 1.6e-123 446.4 283 78.8
Hma1.2p1_1013F.1_g247760 Hydrangea macrophylla HOM05D006653 ORTHO05D008346 3.0e-106 389.0 269 66.9
Cc02_g06010 Coffea canephora HOM05D006653 ORTHO05D008346 4.4e-105 385.2 273 63.7
Actinidia29724 Actinidia chinensis HOM05D006653 ORTHO05D008346 1.7e-104 383.3 261 65.9
Migut.F00634 Erythranthe guttata HOM05D006653 ORTHO05D008346 2.8e-104 382.5 256 68.8
CSS0019013 Camellia sinensis var. sinensis HOM05D006653 ORTHO05D008346 4.9e-104 381.7 284 62.7
TWI53G0670 Tripterygium wilfordii HOM05D006653 ORTHO05D008346 1.2e-102 377.1 279 60.2
SalBow3G2417 Salvia bowleyana HOM05D006653 ORTHO05D008346 5.0e-101 371.7 282 61.3
MSTRG.27303 Avicennia marina HOM05D006653 ORTHO05D008346 6.6e-101 371.3 258 66.3
Cfa001271 Carpinus fangiana HOM05D006653 ORTHO05D008346 1.9e-100 369.8 284 61.3
Oeu001415.1 Olea europaea HOM05D006653 ORTHO05D008346 5.6e-100 368.2 273 62.6
SGA_v2.0_scaffold60G20961 Striga asiatica HOM05D006653 ORTHO05D008346 9.5e-100 367.5 272 63.6
Aqoxy2G00794 Aquilegia oxysepala HOM05D006653 ORTHO05D008346 2.8e-99 365.9 281 58.0
Glyma.18G024100 Glycine max HOM05D006653 ORTHO05D008346 2.8e-99 365.9 272 62.1
Lalb_Chr23g0277111 Lupinus albus HOM05D006653 ORTHO05D008346 1.4e-98 363.6 252 63.9
HanXRQChr17g0560871 Helianthus annuus HOM05D006653 ORTHO05D008346 1.8e-98 363.2 271 60.5
Lsat_1_v5_gn_8_12960 Lactuca sativa HOM05D006653 ORTHO05D008346 1.8e-98 363.2 271 60.1
GSVIVG01032749001 Vitis vinifera HOM05D006653 ORTHO05D008346 3.0e-98 362.5 281 62.3
Ca_15156_v3 Cicer arietinum L. HOM05D006653 ORTHO05D008346 1.5e-97 360.1 251 64.1
Prupe.2G256500 Prunus persica HOM05D006653 ORTHO05D008346 1.5e-97 360.1 282 60.6
Phvul.001G246100 Phaseolus vulgaris HOM05D006653 ORTHO05D008346 2.0e-97 359.8 267 61.4
SalBow3G2982 Salvia bowleyana HOM05D006653 ORTHO05D008346 3.4e-97 359.0 304 56.9
Duzib106G1369 Durio zibethinus HOM05D006653 ORTHO05D008346 5.7e-97 358.2 284 59.2
QL08p063830 Quercus lobata HOM05D006653 ORTHO05D008346 1.3e-96 357.1 261 62.5
Thecc.10G010700 Theobroma cacao HOM05D006653 ORTHO05D008346 2.2e-96 356.3 275 60.4
Medtr3g071640 Medicago truncatula HOM05D006653 ORTHO05D008346 6.4e-96 354.8 280 58.6
Lj6g0008682 Lotus japonicus HOM05D006653 ORTHO05D008346 8.3e-96 354.4 256 62.5
Nn2g13243 Nelumbo nucifera HOM05D006653 ORTHO05D008346 1.4e-95 353.6 281 60.1
Ciclev10032369m.g Citrus clementina HOM05D006653 ORTHO05D008346 3.2e-95 352.4 269 58.7
Gorai.011G290500 Gossypium raimondii HOM05D006653 ORTHO05D008346 3.2e-95 352.4 269 59.9
PSO339G4279 Papaver somniferum HOM05D006653 ORTHO05D008346 5.4e-95 351.7 255 62.4
MD01G1158200 Malus domestica HOM05D006653 ORTHO05D008346 7.0e-95 351.3 258 63.6
CiPaw.01G301500 Carya illinoinensis HOM05D006653 ORTHO05D008346 2.7e-94 349.4 261 60.5
Aa31LG5G19250 Aethionema arabicum HOM05D006653 ORTHO05D008346 3.5e-94 349.0 272 57.7
Eucgr.G03091 Eucalyptus grandis HOM05D006653 ORTHO05D008346 3.5e-94 349.0 251 63.3
PSO801G0584 Papaver somniferum HOM05D006653 ORTHO05D008346 3.5e-94 349.0 255 62.4
Potri.008G073200 Populus trichocarpa HOM05D006653 ORTHO05D008346 3.5e-94 349.0 255 61.6
vmacro06946 Vaccinium macrocarpon HOM05D006653 ORTHO05D008346 2.3e-93 346.3 282 58.5
CsaV3_5G010530 Cucumis sativus L. HOM05D006653 ORTHO05D008346 6.6e-93 344.7 256 59.4
Rhsim03G0147300 Rhododendron simsii HOM05D006653 ORTHO05D008346 1.5e-92 343.6 343 51.3
Haze_17283 Corylus avellana HOM05D006653 ORTHO05D008346 4.3e-92 342.0 294 56.1
AL4G38130 Arabidopsis lyrata HOM05D006653 ORTHO05D008346 7.3e-92 341.3 266 58.6
THA.LOC104810122 Tarenaya hassleriana HOM05D006653 ORTHO05D008346 7.3e-92 341.3 261 57.9
Haze_17274 Corylus avellana HOM05D006653 ORTHO05D008346 2.1e-91 339.7 294 55.8
Sed0010106 Sechium edule HOM05D006653 ORTHO05D008346 4.7e-91 338.6 256 59.0
Thhalv10017062m.g Eutrema salsugineum HOM05D006653 ORTHO05D008346 2.3e-90 336.3 264 58.3
MD07G1226900 Malus domestica HOM05D006653 ORTHO05D008346 2.3e-90 336.3 271 59.8
FAN01G0493 Fragaria x ananassa HOM05D006653 ORTHO05D008346 4.0e-90 335.5 265 60.0
BcaC02g12146 Brassica carinata HOM05D006653 ORTHO05D008346 8.9e-90 334.3 263 57.0
Carub.0004s2256 Capsella rubella HOM05D006653 ORTHO05D008346 1.2e-89 334.0 267 57.7
FAN06G1821 Fragaria x ananassa HOM05D006653 ORTHO05D008346 3.4e-89 332.4 265 60.0
Sp4g22650 Schrenkiella parvula HOM05D006653 ORTHO05D008346 5.8e-89 331.6 272 55.9
C04p07070 Brassica napus HOM05D006653 ORTHO05D008346 2.2e-88 329.7 264 56.8
Sc10g0002660 Simmondsia chinensis HOM05D006653 ORTHO05D008346 4.9e-88 328.6 251 57.8
EL10Ac2g04898 Beta vulgaris HOM05D006653 ORTHO05D008346 6.4e-88 328.2 277 55.2
ECA233G2660 Erigeron canadensis HOM05D006653 ORTHO05D008346 8.3e-88 327.8 244 60.7
arahy.Tifrunner.gnm1.ann1.CC0JZ8 Arachis hypogaea HOM05D006653 ORTHO05D008346 1.4e-87 327.0 328 48.2
Lsat_1_v5_gn_9_60841 Lactuca sativa HOM05D006653 ORTHO05D008346 1.4e-87 327.0 260 56.9
Ah.10g036190 Amaranthus hybridus HOM05D006653 ORTHO05D008346 7.0e-87 324.7 249 57.4
A05p06130 Brassica napus HOM05D006653 ORTHO05D008346 1.2e-86 323.9 267 55.1
Sabra08G0054400 Salix brachista HOM05D006653 ORTHO05D008346 3.5e-86 322.4 315 50.5
ECA232G4592 Erigeron canadensis HOM05D006653 ORTHO05D008346 4.6e-86 322.0 298 52.7
BcaB02g09031 Brassica carinata HOM05D006653 ORTHO05D008346 7.8e-86 321.2 264 55.7
Duzib114G1011 Durio zibethinus HOM05D006653 ORTHO05D008346 2.5e-84 316.2 282 55.0
HanXRQChr09g0253161 Helianthus annuus HOM05D006653 ORTHO05D008346 5.6e-84 315.1 261 55.2
Dinv21781 Davidia involucrata HOM05D006653 ORTHO05D008346 7.3e-84 314.7 226 65.0
TPR.G27742 Trifolium pratense HOM05D006653 ORTHO05D008346 2.1e-83 313.2 346 47.1
RcHm_v2.0_Chr1g0371041 Rosa chinensis HOM05D006653 ORTHO05D008346 1.5e-81 307.0 258 57.0
ATR0174G059 Amborella trichopoda HOM05D006653 ORTHO05D008346 4.4e-81 305.4 278 50.7
TAR633G2597 Trochodendron aralioides HOM05D006653 ORTHO05D008346 1.3e-80 303.9 232 58.6
FAN10G0035 Fragaria x ananassa HOM05D006653 ORTHO05D008346 4.9e-80 302.0 258 56.2
FAN03G1392 Fragaria x ananassa HOM05D006653 ORTHO05D008346 1.4e-79 300.4 265 55.5
BolC4t22332H Brassica oleracea HOM05D006653 ORTHO05D008346 3.2e-79 299.3 239 56.1
HPP92_000719 Vanilla planifolia HOM05D006653 ORTHO05D008346 6.0e-78 295.0 235 57.4
PGR142G3637 Punica granatum HOM05D006653 ORTHO05D008346 7.8e-78 294.7 252 54.8
Hund13903 Selenicereus undatus HOM05D006653 ORTHO05D008346 4.3e-76 288.9 252 51.2
arahy.Tifrunner.gnm1.ann1.WF4WBF Arachis hypogaea HOM05D006653 ORTHO05D008346 2.1e-75 286.6 279 50.2
BraA05t19578Z Brassica rapa HOM05D006653 ORTHO05D008346 3.6e-75 285.8 258 50.4
Glyma.11G233000 Glycine max HOM05D006653 ORTHO05D008346 1.4e-74 283.9 220 59.1
AUR62022948 Chenopodium quinoa HOM05D006653 ORTHO05D008346 2.6e-73 279.6 264 50.4
MELO3C034224.2 Cucumis melo HOM05D006653 ORTHO05D008346 5.8e-73 278.5 206 61.7
VMungo1383G0363 Vigna mungo HOM05D006653 ORTHO05D008346 2.2e-72 276.6 338 42.9
CANSAT56G3810 Cannabis sativa HOM05D006653 ORTHO05D008346 1.4e-71 273.9 206 61.7
ClCG07G004590 Citrullus lanatus HOM05D006653 ORTHO05D008346 4.1e-71 272.3 253 52.2
Psat5g130600 Pisum sativum HOM05D006653 ORTHO05D008346 1.2e-70 270.8 201 61.2
Manes.10G008100 Manihot esculenta HOM05D006653 ORTHO05D008346 1.0e-69 267.7 205 60.0
CARHR135400 Cardamine hirsuta HOM05D006653 ORTHO05D008346 1.3e-69 267.3 218 56.9
Gohir.D10G250100 Gossypium hirsutum HOM05D006653 ORTHO05D008346 1.7e-69 266.9 200 59.5
Gohir.A10G238200 Gossypium hirsutum HOM05D006653 ORTHO05D008346 3.9e-69 265.8 200 58.5
AT2G40316 Arabidopsis thaliana HOM05D006653 ORTHO05D008346 1.1e-68 264.2 214 56.5
DCAR_011848 Daucus carota HOM05D006653 ORTHO05D008346 1.9e-68 263.5 201 62.7
FvH4_7g25140 Fragaria vesca HOM05D006653 ORTHO05D008346 4.3e-68 262.3 201 61.7
Atru.chr12.104 Acer truncatum HOM05D006653 ORTHO05D008346 9.9e-65 251.1 192 59.4
Lj8C62G17 Lonicera japonica HOM05D006653 ORTHO05D008346 4.2e-63 245.7 185 62.2
Zm00001eb013720 Zea mays HOM05D006653 ORTHO05D008346 1.4e-55 220.7 184 52.7
MBI03_g37948_MAGBIO Magnolia biondii HOM05D006653 ORTHO05D008346 1.9e-52 210.3 353 35.7
Mapoly0095s0003 Marchantia polymorpha HOM05D006653 ORTHO05D008346 5.6e-52 208.8 270 37.4
Pp3c11_970 Physcomitrium patens HOM05D006653 ORTHO05D008346 6.2e-51 205.3 234 40.6
PGR142G1681 Punica granatum HOM05D006653 ORTHO05D008346 1.4e-50 204.1 180 53.3
CDE06G2038 Ceratophyllum demersum HOM05D006653 ORTHO05D008346 1.2e-49 201.1 206 46.6
Pp3c2_28750 Physcomitrium patens HOM05D006653 ORTHO05D008346 1.2e-49 201.1 238 39.5
AUR62012309 Chenopodium quinoa HOM05D000043 ORTHO05D003538 2.4e-47 193.4 252 40.9
Dinv10585 Davidia involucrata HOM05D006653 ORTHO05D008346 4.3e-44 182.6 141 61.0
COL.COLO4_25792 Corchorus olitorius HOM05D006653 ORTHO05D008346 2.2e-40 170.2 188 45.2
AagrBONN_evm.TU.Sc2ySwM_362.1315 Anthoceros agrestis HOM05D006653 ORTHO05D008346 4.1e-34 149.4 158 43.0
SMO203G0248 Selaginella moellendorffii HOM05D006653 ORTHO05D008346 5.1e-29 132.5 179 37.4
Cpa.g.sc19.127 Carica papaya HOM05D006653 ORTHO05D008346 9.7e-28 128.3 148 48.6
HanXRQChr08g0221951 Helianthus annuus HOM05D006653 ORTHO05D008346 3.7e-27 126.3 171 38.6
Manes.07G134901 Manihot esculenta HOM05D006653 ORTHO05D008346 3.2e-23 113.2 195 36.4
Manes.07G074522 Manihot esculenta HOM05D006653 ORTHO05D008346 4.5e-17 92.8 93 50.5
SHI28813 Sapria himalayana HOM05D006653 ORTHO05D008346 1.0e-16 91.7 248 27.0
SEGI_38425 Sequoiadendron giganteum HOM05D006653 ORTHO05D008346 4.4e-12 76.3 71 45.1
Manes.04G030750 Manihot esculenta HOM05D006653 ORTHO05D008346 5.7e-12 75.9 77 40.3
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.1e-06 57.4 76 40.8


User provided reference genes

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