Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 8.5e-143 510.4 268 100.0
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.2e-136 490.0 263 96.2
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.0e-127 460.3 263 90.9
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.1e-94 350.5 265 72.8
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.6e-91 339.3 266 68.8
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 1.5e-86 323.6 229 72.1
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 9.1e-36 154.8 275 38.2
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 8.8e-31 138.3 245 36.3
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.5e-30 137.5 252 35.3
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.7e-29 132.9 208 36.1
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 8.3e-29 131.7 199 41.7
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 8.3e-29 131.7 241 36.5
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.1e-28 131.3 199 41.7
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 4.1e-28 129.4 181 44.2
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 4.1e-28 129.4 225 36.4
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.1e-28 129.4 208 42.3
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 5.3e-28 129.0 238 35.7
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 5.3e-28 129.0 267 35.2
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.2e-27 127.9 196 40.8
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.2e-27 127.9 201 40.8
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.6e-27 127.5 186 37.1
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 2.0e-27 127.1 216 35.6
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 5.9e-27 125.6 232 35.3
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 2.9e-26 123.2 244 33.2
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 3.8e-26 122.9 253 36.8
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.2e-25 119.8 195 40.5
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.5e-25 119.0 195 40.5
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 7.2e-25 118.6 181 42.0
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.2e-25 118.6 196 35.2
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.2e-25 118.6 196 35.2
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 7.2e-25 118.6 196 35.2
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 7.2e-25 118.6 172 38.4
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 4.7e-24 115.9 200 38.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 6.1e-24 115.5 166 44.0
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.0e-23 114.8 163 40.5
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.4e-23 114.4 168 42.3
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.3e-23 113.6 177 37.9
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.0e-23 113.2 193 37.8
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 4.0e-23 112.8 186 37.1
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 5.2e-23 112.5 171 39.8
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 5.2e-23 112.5 182 39.0
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 5.2e-23 112.5 173 37.6
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 6.8e-23 112.1 217 35.9
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.8e-23 112.1 194 36.6
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 8.8e-23 111.7 175 36.6
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 2.0e-22 110.5 196 38.8
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 2.6e-22 110.2 195 36.9
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 7.5e-22 108.6 171 36.8
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 9.8e-22 108.2 182 35.7
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 9.8e-22 108.2 198 38.4
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.3e-21 107.8 195 36.9
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.3e-21 107.8 175 37.7
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.3e-21 107.8 198 38.9
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.3e-21 107.8 281 34.9
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 1.7e-21 107.5 199 39.2
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.7e-21 107.5 173 34.7
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 2.2e-21 107.1 174 36.8
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 2.8e-21 106.7 130 42.3
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 3.7e-21 106.3 206 35.0
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 3.7e-21 106.3 149 40.9
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.8e-21 105.9 235 35.3
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 4.8e-21 105.9 198 37.4
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 6.3e-21 105.5 175 34.3
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 6.3e-21 105.5 169 35.5
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 8.3e-21 105.1 195 38.5
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.1e-20 104.8 255 31.8
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.1e-20 104.8 203 34.5
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 3.1e-20 103.2 211 35.5
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 7.0e-20 102.1 200 35.0
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 9.1e-20 101.7 167 38.3
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 2.0e-19 100.5 194 36.1
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.5e-19 99.8 213 33.3
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.5e-19 99.4 196 37.2
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 7.7e-19 98.6 206 34.0
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.0e-18 98.2 196 37.2
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 2.3e-18 97.1 177 34.5
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.9e-18 96.7 165 38.2
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.9e-18 96.7 181 38.1
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.9e-18 96.7 181 38.1
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.9e-18 96.7 181 38.1
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.8e-18 96.3 206 33.0
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 5.0e-18 95.9 143 37.8
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 5.0e-18 95.9 187 32.1
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 6.6e-18 95.5 174 29.9
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.1e-17 94.7 149 37.6
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.1e-17 94.7 168 33.9
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 2.5e-17 93.6 174 34.5
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 3.3e-17 93.2 199 32.2
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 4.2e-17 92.8 269 32.3
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 4.2e-17 92.8 148 36.5
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.2e-17 92.8 251 29.1
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 5.5e-17 92.4 230 35.7
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 5.5e-17 92.4 181 31.5
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 5.5e-17 92.4 176 34.7
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 5.5e-17 92.4 176 38.1
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 7.2e-17 92.0 165 39.4
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.2e-17 92.0 181 30.9
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 1.2e-16 91.3 174 32.8
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.6e-16 90.9 154 35.1
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 2.1e-16 90.5 174 32.8
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.1e-16 90.5 195 34.9
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 2.1e-16 90.5 176 34.1
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.1e-16 90.5 178 33.1
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 3.6e-16 89.7 201 33.8
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 4.7e-16 89.4 229 33.6
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.7e-16 89.4 168 38.7
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 6.1e-16 89.0 172 33.7
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 6.1e-16 89.0 255 29.0
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 8.0e-16 88.6 255 32.9
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 8.0e-16 88.6 196 32.1
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.4e-15 87.8 155 31.6
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.8e-15 87.4 179 31.3
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.3e-15 87.0 175 33.1
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 3.0e-15 86.7 176 33.0
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 5.2e-15 85.9 204 35.3
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 6.8e-15 85.5 170 32.4
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 6.8e-15 85.5 97 46.4
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 1.5e-14 84.3 141 34.8
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.5e-14 84.3 175 33.1
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 4.4e-14 82.8 156 30.1
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 7.5e-14 82.0 171 31.6
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 7.5e-14 82.0 141 34.8
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 7.5e-14 82.0 139 35.3
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 1.3e-13 81.3 168 32.7
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 3.7e-13 79.7 110 42.7
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 3.7e-13 79.7 175 32.6
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.1e-12 78.2 195 31.3
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.8e-12 77.4 201 29.9
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 7.0e-12 75.5 268 29.5
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 7.0e-12 75.5 176 31.2
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 4.5e-11 72.8 108 38.0
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 7.8e-11 72.0 273 26.4
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.3e-10 71.2 202 30.7
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 3.9e-10 69.7 207 26.1
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 6.6e-10 68.9 202 27.2
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 6.6e-10 68.9 177 30.5
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 8.6e-10 68.6 221 28.1
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.5e-09 67.8 147 30.6
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.5e-09 67.8 119 41.2
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 2.5e-09 67.0 284 26.8
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 9.5e-09 65.1 196 25.5
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 6.1e-08 62.4 153 35.3
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 8.0e-08 62.0 177 29.4
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 1.4e-07 61.2 176 26.7
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 3.1e-07 60.1 112 33.9
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 5.2e-07 59.3 62 51.6
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 9.8e-06 55.1 123 30.1


User provided reference genes

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