Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 3.0e-87 325.1 158 100.0
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 1.2e-83 313.2 154 98.7
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 2.2e-82 308.9 153 97.4
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 3.4e-67 258.5 153 82.4
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.9e-65 252.7 153 81.0
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 8.8e-55 217.2 153 70.6
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 4.0e-47 191.8 161 61.5
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 7.5e-46 187.6 159 61.6
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 1.1e-44 183.7 161 59.6
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 1.1e-44 183.7 157 60.5
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 1.0e-42 177.2 158 57.6
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 1.3e-42 176.8 152 58.6
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 1.7e-42 176.4 152 57.9
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.2e-40 170.2 169 54.4
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 3.6e-40 168.7 165 55.2
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 1.4e-39 166.8 162 56.2
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 5.2e-39 164.9 156 55.8
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 2.4e-36 156.0 144 55.6
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 1.6e-35 153.3 152 54.6
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 1.9e-33 146.4 126 57.9
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 5.6e-33 144.8 126 57.9
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 9.5e-33 144.1 125 59.2
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 2.1e-32 142.9 158 51.3
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 8.0e-32 141.0 151 49.7
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 1.0e-31 140.6 124 58.1
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 1.4e-31 140.2 146 50.0
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 2.2e-29 132.9 133 56.4
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 4.9e-29 131.7 162 51.2
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 1.4e-28 130.2 157 50.3
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 1.4e-28 130.2 156 50.6
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 3.2e-28 129.0 130 50.0
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 7.0e-28 127.9 156 47.4
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 9.2e-28 127.5 139 51.1
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 9.2e-28 127.5 145 51.7
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 2.0e-27 126.3 130 54.6
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 2.7e-27 125.9 131 54.2
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 2.7e-27 125.9 128 51.6
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.7e-27 125.9 139 50.4
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 4.6e-27 125.2 139 49.6
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 1.3e-26 123.6 133 53.4
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 5.0e-26 121.7 137 46.7
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 5.0e-26 121.7 132 51.5
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 6.6e-26 121.3 134 52.2
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 3.3e-25 119.0 150 47.3
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 3.3e-25 119.0 141 47.5
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 5.6e-25 118.2 137 46.0
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 7.3e-25 117.9 135 53.3
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 7.3e-25 117.9 126 53.2
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 7.3e-25 117.9 136 49.3
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 9.5e-25 117.5 142 49.3
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 1.2e-24 117.1 151 47.7
Hma1.2p1_0264F.1_g105790 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 2.8e-24 115.9 106 52.8
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 2.8e-24 115.9 121 51.2
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 2.8e-24 115.9 138 47.1
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 3.6e-24 115.5 126 53.2
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 8.0e-24 114.4 121 51.2
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 1.8e-23 113.2 165 46.1
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 4.0e-23 112.1 126 52.4
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 8.9e-23 110.9 138 47.8
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 8.9e-23 110.9 134 49.3
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 8.9e-23 110.9 134 49.3
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 1.2e-22 110.5 131 49.6
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 2.6e-22 109.4 131 48.9
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 5.8e-22 108.2 133 46.6
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 1.3e-21 107.1 143 44.1
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.3e-21 107.1 135 47.4
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 8.3e-21 104.4 131 47.3
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 1.9e-20 103.2 131 47.3
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 3.2e-20 102.4 158 43.7
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 5.4e-20 101.7 167 40.7
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 1.2e-19 100.5 104 50.0
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 1.6e-19 100.1 139 43.9
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 2.0e-19 99.8 122 47.5
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 2.7e-19 99.4 121 47.1
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 4.6e-19 98.6 153 41.2
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 1.0e-18 97.4 130 46.9
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 1.3e-18 97.1 133 46.6
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 1.7e-18 96.7 133 46.6
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 2.3e-18 96.3 145 42.8
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 2.3e-18 96.3 145 42.8
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 5.0e-18 95.1 128 46.1
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 1.5e-17 93.6 152 38.8
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 3.3e-17 92.4 152 41.4
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 3.3e-17 92.4 124 43.5
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 9.5e-17 90.9 83 55.4
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 1.2e-16 90.5 168 37.5
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 2.1e-16 89.7 173 36.4
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 3.6e-16 89.0 153 37.3
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 3.6e-16 89.0 158 38.6
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 3.1e-15 85.9 130 39.2
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 7.5e-14 81.3 92 53.3
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 2.4e-12 76.3 121 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 3.2e-12 75.9 122 38.5
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 1.3e-10 70.5 90 48.9
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 1.1e-09 67.4 143 30.1
Os05g0516300 Oryza sativa ssp. japonica HOM05D007521 ORTHO05D009387 4.0e-07 58.9 124 36.3


User provided reference genes

Program Settings