Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g051640.4 Solanum lycopersicum HOM05D000029 ORTHO05D006111 2.1e-103 380.9 714 100.0
Sopen05g030100 Solanum pennellii HOM05D000029 ORTHO05D006111 7.4e-93 345.9 699 99.1
PGSC0003DMG400007234 Solanum tuberosum HOM05D000029 ORTHO05D006111 2.2e-81 307.8 699 94.6
CAN.G937.3 Capsicum annuum HOM05D000029 ORTHO05D006111 1.5e-56 225.3 702 88.6
Nitab4.5_0003647g0060 Nicotiana tabacum HOM05D000029 ORTHO05D006111 3.3e-40 171.0 196 78.6
Nitab4.5_0000818g0220 Nicotiana tabacum HOM05D000029 ORTHO05D006111 1.5e-37 162.2 196 77.0
Peaxi162Scf00167g00611 Petunia axillaris HOM05D000029 ORTHO05D006111 5.8e-37 160.2 198 80.3
Cc02_g04420 Coffea canephora HOM05D000029 ORTHO05D006111 3.2e-35 154.5 196 76.5
Nitab4.5_0012904g0010 Nicotiana tabacum HOM05D000029 ORTHO05D006111 1.1e-32 146.0 196 73.5
Nitab4.5_0001267g0130 Nicotiana tabacum HOM05D000029 ORTHO05D006111 2.5e-32 144.8 196 71.9
Peaxi162Scf01876g00003 Petunia axillaris HOM05D000029 ORTHO05D006111 7.3e-32 143.3 196 73.5
PGSC0003DMG400018849 Solanum tuberosum HOM05D000029 ORTHO05D006111 2.1e-31 141.7 196 67.9
Dinv16847 Davidia involucrata HOM05D000029 ORTHO05D006111 8.1e-31 139.8 195 74.4
Solyc03g093330.4 Solanum lycopersicum HOM05D000029 ORTHO05D006111 1.8e-30 138.7 196 66.8
Dinv06574 Davidia involucrata HOM05D000029 ORTHO05D006111 5.2e-30 137.1 196 71.4
Cpa.g.sc13.290 Carica papaya HOM05D000029 ORTHO05D006111 4.4e-29 134.0 199 70.9
Lj8C43T13 Lonicera japonica HOM05D000029 ORTHO05D006111 4.4e-29 134.0 198 73.7
Ah.07g207650 Amaranthus hybridus HOM05D000029 ORTHO05D006111 5.8e-29 133.7 196 73.0
Duzib084G0549 Durio zibethinus HOM05D000029 ORTHO05D006111 9.9e-29 132.9 199 71.9
Hma1.2p1_1132F.1_g260240 Hydrangea macrophylla HOM05D000029 ORTHO05D006111 9.9e-29 132.9 196 68.9
Nn6g33906 Nelumbo nucifera HOM05D000029 ORTHO05D006111 1.7e-28 132.1 196 71.4
COL.COLO4_14099 Corchorus olitorius HOM05D000029 ORTHO05D006111 2.9e-28 131.3 199 71.4
Gorai.008G215400 Gossypium raimondii HOM05D000029 ORTHO05D006111 3.7e-28 131.0 199 70.9
Sopen03g024120 Solanum pennellii HOM05D000029 ORTHO05D006111 3.7e-28 131.0 100 67.0
Gohir.D12G200200 Gossypium hirsutum HOM05D000029 ORTHO05D006111 6.4e-28 130.2 199 70.9
Thecc.03G153300 Theobroma cacao HOM05D000029 ORTHO05D006111 6.4e-28 130.2 199 69.8
CAN.G48.44 Capsicum annuum HOM05D000029 ORTHO05D006111 8.4e-28 129.8 101 68.3
Cfa008146 Carpinus fangiana HOM05D000029 ORTHO05D006111 8.4e-28 129.8 196 69.9
Duzib205G1389 Durio zibethinus HOM05D000029 ORTHO05D006111 8.4e-28 129.8 199 69.8
EL10Ac3g05857 Beta vulgaris HOM05D000029 ORTHO05D006111 1.1e-27 129.4 196 70.9
Ciclev10004254m.g Citrus clementina HOM05D000029 ORTHO05D006111 1.4e-27 129.0 199 69.3
Nn1g00950 Nelumbo nucifera HOM05D000029 ORTHO05D006111 1.4e-27 129.0 192 71.4
Gohir.A12G197700 Gossypium hirsutum HOM05D000029 ORTHO05D006111 1.9e-27 128.6 199 70.9
TAR375G1068 Trochodendron aralioides HOM05D000029 ORTHO05D006111 3.2e-27 127.9 195 71.3
MSTRG.8831 Avicennia marina HOM05D000029 ORTHO05D006111 4.1e-27 127.5 196 65.8
Sc25g0000020 Simmondsia chinensis HOM05D000029 ORTHO05D006111 5.4e-27 127.1 196 71.4
Actinidia24992 Actinidia chinensis HOM05D000029 ORTHO05D006111 1.6e-26 125.6 191 72.3
CiPaw.03G020500 Carya illinoinensis HOM05D000029 ORTHO05D006111 1.6e-26 125.6 196 63.3
Lj1C978T3 Lonicera japonica HOM05D000029 ORTHO05D006111 1.6e-26 125.6 198 69.7
Atru.chr1.745_Atru.chr1.746 Acer truncatum HOM05D000029 ORTHO05D006111 2.7e-26 124.8 199 67.3
Duzib068G0592 Durio zibethinus HOM05D000029 ORTHO05D006111 2.7e-26 124.8 198 70.2
Hund11837 Selenicereus undatus HOM05D000029 ORTHO05D006111 2.7e-26 124.8 198 69.7
CSS0042469 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006111 3.5e-26 124.4 191 72.3
AUR62002221 Chenopodium quinoa HOM05D000029 ORTHO05D006111 4.6e-26 124.0 196 64.8
Hma1.2p1_0432F.1_g151890 Hydrangea macrophylla HOM05D000029 ORTHO05D006111 7.8e-26 123.2 197 66.5
Haze_13896 Corylus avellana HOM05D000029 ORTHO05D006111 1.3e-25 122.5 192 69.8
Lsat_1_v5_gn_8_10241 Lactuca sativa HOM05D000029 ORTHO05D006111 1.3e-25 122.5 196 67.9
TWI39G0899 Tripterygium wilfordii HOM05D000029 ORTHO05D006111 1.3e-25 122.5 198 70.2
Potri.003G107600 Populus trichocarpa HOM05D000029 ORTHO05D006111 1.7e-25 122.1 194 69.1
RcHm_v2.0_Chr1g0374101 Rosa chinensis HOM05D000029 ORTHO05D006111 2.3e-25 121.7 198 68.7
TWI14G1160 Tripterygium wilfordii HOM05D000029 ORTHO05D006111 2.3e-25 121.7 198 68.2
TAR713G0002 Trochodendron aralioides HOM05D000029 ORTHO05D006111 2.3e-25 121.7 196 67.3
vmacro22804 Vaccinium macrocarpon HOM05D000029 ORTHO05D006111 2.3e-25 121.7 198 69.2
CiPaw.04G013300 Carya illinoinensis HOM05D000029 ORTHO05D006111 3.0e-25 121.3 197 67.0
Rhsim03G0165900 Rhododendron simsii HOM05D000029 ORTHO05D006111 3.0e-25 121.3 197 70.1
CsaV3_4G004030 Cucumis sativus L. HOM05D000029 ORTHO05D006111 3.9e-25 120.9 197 67.0
Sabra03G0074400 Salix brachista HOM05D000029 ORTHO05D006111 5.1e-25 120.6 194 66.0
DCAR_018116 Daucus carota HOM05D000029 ORTHO05D006111 6.6e-25 120.2 197 68.5
Migut.F00488 Erythranthe guttata HOM05D000029 ORTHO05D006111 6.6e-25 120.2 192 70.8
Prupe.2G275500 Prunus persica HOM05D000029 ORTHO05D006111 6.6e-25 120.2 198 64.1
PGR142G1963 Punica granatum HOM05D000029 ORTHO05D006111 6.6e-25 120.2 200 69.0
Glyma.09G230300 Glycine max HOM05D000029 ORTHO05D006111 1.5e-24 119.0 198 68.2
Gohir.D07G046300 Gossypium hirsutum HOM05D000029 ORTHO05D006111 1.5e-24 119.0 200 69.5
MD01G1181700 Malus domestica HOM05D000029 ORTHO05D006111 1.5e-24 119.0 197 70.6
DCAR_014617 Daucus carota HOM05D000029 ORTHO05D006111 2.5e-24 118.2 197 68.0
Sabra01G0097100 Salix brachista HOM05D000029 ORTHO05D006111 3.3e-24 117.9 198 67.7
Aqoxy5G03842_Aqoxy5G03843 Aquilegia oxysepala HOM05D000029 ORTHO05D006111 4.3e-24 117.5 197 68.5
Glyma.12G006300 Glycine max HOM05D000029 ORTHO05D006111 4.3e-24 117.5 197 67.5
Lsat_1_v5_gn_2_128681 Lactuca sativa HOM05D000029 ORTHO05D006111 4.3e-24 117.5 196 67.3
AUR62015433 Chenopodium quinoa HOM05D000029 ORTHO05D006111 5.6e-24 117.1 199 66.3
Ca_02787_v3 Cicer arietinum L. HOM05D000029 ORTHO05D006111 5.6e-24 117.1 202 66.8
ClCG07G016830 Citrullus lanatus HOM05D000029 ORTHO05D006111 5.6e-24 117.1 197 66.0
Gorai.001G049500 Gossypium raimondii HOM05D000029 ORTHO05D006111 5.6e-24 117.1 200 68.5
Potri.001G126100 Populus trichocarpa HOM05D000029 ORTHO05D006111 5.6e-24 117.1 194 64.9
MELO3C017662.2 Cucumis melo HOM05D000029 ORTHO05D006111 9.6e-24 116.3 197 67.0
Phvul.011G007200 Phaseolus vulgaris HOM05D000029 ORTHO05D006111 1.6e-23 115.5 200 69.0
VMungo1127G0104 Vigna mungo HOM05D000029 ORTHO05D006111 2.1e-23 115.2 195 68.7
MD07G1251900 Malus domestica HOM05D000029 ORTHO05D006111 3.6e-23 114.4 197 69.0
Gohir.A07G042100 Gossypium hirsutum HOM05D000029 ORTHO05D006111 6.2e-23 113.6 200 69.5
Manes.06G133300 Manihot esculenta HOM05D000029 ORTHO05D006111 8.1e-23 113.2 99 53.5
Manes.14G037000 Manihot esculenta HOM05D000029 ORTHO05D006111 1.8e-22 112.1 99 52.5
Medtr4g036575 Medicago truncatula HOM05D000029 ORTHO05D006111 1.8e-22 112.1 202 66.8
CSS0044206 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D006111 2.4e-22 111.7 99 54.5
Lalb_Chr10g0092351 Lupinus albus HOM05D000029 ORTHO05D006111 3.1e-22 111.3 199 67.3
Lj3g0001095 Lotus japonicus HOM05D000029 ORTHO05D006111 4.0e-22 110.9 198 68.2
ECA233G5029 Erigeron canadensis HOM05D000029 ORTHO05D006111 5.2e-22 110.5 196 69.4
vmacro23314 Vaccinium macrocarpon HOM05D000029 ORTHO05D006111 5.2e-22 110.5 102 57.8
MSTRG.27204 Avicennia marina HOM05D000029 ORTHO05D006111 6.8e-22 110.2 107 55.1
CANSAT56G0513 Cannabis sativa HOM05D000029 ORTHO05D006111 6.8e-22 110.2 197 66.5
Oeu017785.2 Olea europaea HOM05D000029 ORTHO05D006111 1.5e-21 109.0 111 55.9
MSTRG.8408 Avicennia marina HOM05D000029 ORTHO05D006111 3.4e-21 107.8 195 67.2
SGA_v2.0_scaffold2G01222 Striga asiatica HOM05D000029 ORTHO05D006111 3.4e-21 107.8 197 66.0
ECA238G4106 Erigeron canadensis HOM05D000029 ORTHO05D006111 4.4e-21 107.5 83 59.0
Eucgr.A02902 Eucalyptus grandis HOM05D000029 ORTHO05D006111 4.4e-21 107.5 96 61.5
Oeu031397.1 Olea europaea HOM05D000029 ORTHO05D006111 9.9e-21 106.3 113 54.9
HanXRQChr14g0461311 Helianthus annuus HOM05D000029 ORTHO05D006111 1.3e-20 105.9 196 65.3
HanXRQChr13g0420541 Helianthus annuus HOM05D000029 ORTHO05D006111 1.7e-20 105.5 196 69.4
Sed0020545 Sechium edule HOM05D000029 ORTHO05D006111 2.2e-20 105.1 197 65.0
Psat6g142440 Pisum sativum HOM05D000029 ORTHO05D006111 2.9e-20 104.8 199 66.3
TPR.G3640 Trifolium pratense HOM05D000029 ORTHO05D006111 2.9e-20 104.8 199 64.3
FAN01G0450 Fragaria x ananassa HOM05D000029 ORTHO05D006111 6.4e-20 103.6 197 67.0
FAN06G2406 Fragaria x ananassa HOM05D000029 ORTHO05D006111 6.4e-20 103.6 197 67.5
FAN06G4115 Fragaria x ananassa HOM05D000029 ORTHO05D006111 6.4e-20 103.6 197 67.5
FAN03G2940 Fragaria x ananassa HOM05D000029 ORTHO05D006111 8.4e-20 103.2 197 67.0
FvH4_7g27270 Fragaria vesca HOM05D000029 ORTHO05D006111 1.1e-19 102.8 197 67.0
arahy.Tifrunner.gnm1.ann1.91FZ1V Arachis hypogaea HOM05D000029 ORTHO05D006111 1.4e-19 102.4 195 66.2
QL09p005274 Quercus lobata HOM05D000029 ORTHO05D006111 1.9e-19 102.1 106 49.1
SalBow2G0077 Salvia bowleyana HOM05D000029 ORTHO05D006111 1.9e-19 102.1 99 50.5
Eucgr.K00167 Eucalyptus grandis HOM05D000029 ORTHO05D006111 3.2e-19 101.3 95 56.8
FAN10G2044 Fragaria x ananassa HOM05D000029 ORTHO05D006111 5.4e-19 100.5 197 65.0
Atru.chr1.815 Acer truncatum HOM05D000029 ORTHO05D006111 1.6e-18 99.0 92 57.6
Oeu022471.1 Olea europaea HOM05D000029 ORTHO05D006111 1.6e-18 99.0 105 51.4
GSVIVG01014037001 Vitis vinifera HOM05D000029 ORTHO05D006111 1.6e-18 99.0 86 60.5
CARHR275250 Cardamine hirsuta HOM05D000029 ORTHO05D006111 2.1e-18 98.6 196 62.2
Carub.0008s2217 Capsella rubella HOM05D000029 ORTHO05D006111 2.7e-18 98.2 201 62.2
Aa31LG11G1930 Aethionema arabicum HOM05D000029 ORTHO05D006111 3.5e-18 97.8 199 59.8
AT5G61480 Arabidopsis thaliana HOM05D000029 ORTHO05D006111 4.6e-18 97.4 201 61.2
AL8G38170 Arabidopsis lyrata HOM05D000029 ORTHO05D006111 6.0e-18 97.1 201 61.7
THA.LOC104811528 Tarenaya hassleriana HOM05D000029 ORTHO05D006111 6.0e-18 97.1 200 63.5
PSO063G7052 Papaver somniferum HOM05D000029 ORTHO05D006111 3.0e-17 94.7 208 63.9
PGR042G2807 Punica granatum HOM05D000029 ORTHO05D006111 3.0e-17 94.7 77 59.7
arahy.Tifrunner.gnm1.ann1.3NBS2E Arachis hypogaea HOM05D000029 ORTHO05D006111 8.7e-17 93.2 85 56.5
THA.LOC104818317 Tarenaya hassleriana HOM05D000029 ORTHO05D006111 5.6e-16 90.5 198 59.1
PSO782G2005 Papaver somniferum HOM05D000029 ORTHO05D006111 9.6e-16 89.7 108 44.4
BcaC06g33153 Brassica carinata HOM05D000029 ORTHO05D006111 1.3e-15 89.4 194 64.4
Thhalv10003570m.g Eutrema salsugineum HOM05D000029 ORTHO05D006111 2.8e-15 88.2 199 60.3
Sp2g24680 Schrenkiella parvula HOM05D000029 ORTHO05D006111 8.1e-15 86.7 198 58.6
Haze_17784 Corylus avellana HOM05D000029 ORTHO05D006111 1.1e-14 86.3 107 48.6
vmacro06817 Vaccinium macrocarpon HOM05D048408 ORTHO05D028904 4.0e-14 84.3 79 46.8
BolC7t45042H Brassica oleracea HOM05D000029 ORTHO05D006111 1.3e-12 79.3 193 59.6
SalBow5G2785 Salvia bowleyana HOM05D000029 ORTHO05D006111 1.3e-12 79.3 95 44.2
C07p45190 Brassica napus HOM05D000029 ORTHO05D006111 2.2e-12 78.6 193 59.6
SEGI_13264 Sequoiadendron giganteum HOM05D000029 ORTHO05D006111 4.9e-12 77.4 203 59.6
A03p47080 Brassica napus HOM05D000029 ORTHO05D006111 8.4e-12 76.6 193 59.1
BraA03t13835Z Brassica rapa HOM05D000029 ORTHO05D006111 8.4e-12 76.6 193 59.1
ATR0057G078 Amborella trichopoda HOM05D000029 ORTHO05D006111 1.1e-11 76.3 106 38.7
Medtr4g036695 Medicago truncatula HOM05D000029 ORTHO05D006111 2.4e-11 75.1 98 51.0
CDE11G0883 Ceratophyllum demersum HOM05D000029 ORTHO05D006111 1.2e-10 72.8 94 45.7
SEGI_31478 Sequoiadendron giganteum HOM05D000029 ORTHO05D006111 4.6e-10 70.9 200 44.5
Medtr4g036505 Medicago truncatula HOM05D000029 ORTHO05D006111 3.0e-09 68.2 95 46.3
Zm00001eb172920 Zea mays HOM05D000029 ORTHO05D006111 9.6e-08 63.2 88 36.4
HanXRQChr11g0352421 Helianthus annuus HOM05D000029 ORTHO05D008509 3.6e-07 61.2 70 40.0
SMO364G0292 Selaginella moellendorffii HOM05D000029 ORTHO05D000854 4.8e-07 60.8 100 34.0
ATR0767G025 Amborella trichopoda HOM05D000029 ORTHO05D000854 6.2e-07 60.5 66 43.9
CSS0037445 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D008509 1.1e-06 59.7 98 38.8
Prupe.1G447000 Prunus persica HOM05D000029 ORTHO05D008509 1.1e-06 59.7 95 41.1
BcaB01g00027 Brassica carinata HOM05D000029 ORTHO05D008675 1.4e-06 59.3 91 40.7
TPR.G24739 Trifolium pratense HOM05D000029 ORTHO05D000854 1.4e-06 59.3 104 39.4
Aa31LG7G12640 Aethionema arabicum HOM05D000021 ORTHO05D000010 1.8e-06 58.9 105 37.1
AagrBONN_evm.TU.Sc2ySwM_228.4682 Anthoceros agrestis HOM05D000029 ORTHO05D000854 1.8e-06 58.9 104 36.5
BcaC07g39929 Brassica carinata HOM05D000029 ORTHO05D008675 1.8e-06 58.9 90 43.3
BolC8t50764H Brassica oleracea HOM05D000029 ORTHO05D008675 1.8e-06 58.9 90 43.3
Potri.006G237400 Populus trichocarpa HOM05D000029 ORTHO05D008509 2.4e-06 58.5 95 38.9
Sabra06G0185600 Salix brachista HOM05D000029 ORTHO05D008509 2.4e-06 58.5 95 37.9
Duzib160G0062 Durio zibethinus HOM05D000029 ORTHO05D001395 3.1e-06 58.2 99 37.4
Ah.06g187990 Amaranthus hybridus HOM05D000029 ORTHO05D003419 4.0e-06 57.8 77 41.6
ATR0629G132 Amborella trichopoda HOM05D000029 ORTHO05D008675 4.0e-06 57.8 78 42.3
C08p31430 Brassica napus HOM05D000029 ORTHO05D008675 4.0e-06 57.8 90 42.2
Medtr2g090710 Medicago truncatula HOM05D000029 ORTHO05D001395 4.0e-06 57.8 99 36.4
Pp3c6_21940 Physcomitrium patens HOM05D000029 ORTHO05D000854 4.0e-06 57.8 102 31.4
SMO145G0070 Selaginella moellendorffii HOM05D000029 ORTHO05D006111 4.0e-06 57.8 108 33.3
BcaC01g02816 Brassica carinata HOM05D000029 ORTHO05D000854 5.3e-06 57.4 97 36.1
C03p59960 Brassica napus HOM05D000029 ORTHO05D000854 5.3e-06 57.4 97 36.1
BolC3t18260H Brassica oleracea HOM05D000029 ORTHO05D000854 5.3e-06 57.4 97 36.1
Potri.003G157300 Populus trichocarpa HOM05D000029 ORTHO05D000854 5.3e-06 57.4 99 37.4
vmacro07940 Vaccinium macrocarpon HOM05D001169 ORTHO05D001002 5.3e-06 57.4 69 43.5
HPP92_005347 Vanilla planifolia HOM05D000029 ORTHO05D006111 5.3e-06 57.4 83 42.2
Eucgr.A02410 Eucalyptus grandis HOM05D000029 ORTHO05D008567 6.9e-06 57.0 74 39.2
A06p32580 Brassica napus HOM05D000029 ORTHO05D000854 9.0e-06 56.6 94 36.2
BraA06t26186Z Brassica rapa HOM05D000029 ORTHO05D000854 9.0e-06 56.6 94 36.2
CANSAT80G0552 Cannabis sativa HOM05D000029 ORTHO05D008567 9.0e-06 56.6 85 38.8
HanXRQChr09g0243301 Helianthus annuus HOM05D000029 ORTHO05D008675 9.0e-06 56.6 98 40.8
Nn2g12265 Nelumbo nucifera HOM05D000029 ORTHO05D008675 9.0e-06 56.6 93 37.6
Sp5g06380 Schrenkiella parvula HOM05D000029 ORTHO05D008675 9.0e-06 56.6 83 39.8


User provided reference genes

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