Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 7.2e-295 1016.5 523 100.0
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.4e-277 959.1 523 93.9
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-236 822.8 502 86.3
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.7e-235 819.3 425 100.0
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.9e-226 789.3 517 77.6
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 9.5e-223 776.9 526 76.0
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.4e-221 773.1 513 76.2
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 4.0e-221 771.5 524 75.6
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 5.2e-221 771.2 513 76.6
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 5.2e-221 771.2 534 74.7
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.2e-220 770.0 516 76.6
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.5e-220 769.6 519 76.1
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 3.4e-220 768.5 517 75.4
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.7e-219 766.1 520 74.6
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.9e-219 765.4 513 77.0
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.2e-217 760.0 523 74.4
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.5e-217 758.4 524 75.4
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 6.0e-217 757.7 523 74.4
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.0e-216 756.9 514 74.3
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.0e-216 756.9 520 74.8
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 8.6e-216 753.8 525 74.3
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.1e-214 749.2 543 72.4
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 2.1e-214 749.2 524 72.5
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.6e-214 748.4 526 74.1
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 8.1e-214 747.3 512 74.6
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.1e-213 746.9 524 72.5
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 3.1e-213 745.3 501 76.2
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 3.1e-213 745.3 529 72.4
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 5.2e-213 744.6 517 75.2
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.2e-212 743.4 516 72.1
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.5e-212 743.0 524 72.7
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 6.4e-211 737.6 514 73.2
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 8.4e-211 737.3 517 72.1
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.4e-210 735.7 517 72.7
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.2e-209 733.4 521 72.2
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.6e-209 733.0 512 74.2
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 2.7e-209 732.3 587 66.3
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 4.6e-209 731.5 517 74.1
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 7.8e-209 730.7 524 71.8
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.7e-208 729.6 512 72.1
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.1e-207 726.9 518 71.2
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 3.3e-207 725.3 524 71.2
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.1e-205 720.3 512 71.5
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-205 719.9 515 73.0
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.2e-204 716.8 495 75.8
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.5e-204 716.5 512 72.1
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 4.5e-204 714.9 512 72.5
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.7e-203 713.0 516 72.1
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 1.1e-202 710.3 516 71.9
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 5.4e-202 708.0 515 69.7
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 7.1e-202 707.6 496 73.8
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 7.9e-201 704.1 509 70.5
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.3e-200 702.6 509 71.1
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.9e-199 699.5 520 67.7
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.3e-198 696.8 525 71.4
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 2.1e-198 696.0 529 68.4
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 3.7e-198 695.3 480 73.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 2.0e-196 689.5 470 76.0
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.4e-194 683.3 529 67.1
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.5e-191 673.3 423 83.2
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.5e-191 672.5 616 60.1
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 4.0e-189 665.2 472 71.6
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.4e-188 662.1 509 68.6
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.7e-187 659.8 508 68.5
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.4e-186 656.8 444 76.8
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 7.1e-186 654.4 555 63.1
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.1e-185 652.9 527 66.6
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.1e-185 652.9 524 67.6
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 3.5e-185 652.1 519 65.1
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.0e-184 650.6 426 79.3
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 3.9e-184 648.7 475 70.9
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 3.9e-184 648.7 444 77.3
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.0e-180 636.3 521 63.3
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.7e-179 633.3 478 70.3
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.9e-178 629.8 425 79.8
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 7.9e-177 624.4 506 65.8
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 3.9e-176 622.1 545 62.2
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.5e-175 620.2 542 62.4
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 6.9e-173 611.3 462 71.9
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.0e-172 609.8 560 60.4
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.0e-172 609.8 435 71.3
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.2e-171 606.3 500 65.8
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 3.0e-168 595.9 418 74.9
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.2e-166 589.7 435 72.2
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.5e-164 582.0 415 71.8
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.7e-163 580.1 400 75.0
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 2.5e-162 576.2 565 56.8
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 4.2e-162 575.5 592 56.6
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 7.2e-162 574.7 545 59.3
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-159 567.4 387 78.3
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 6.3e-158 561.6 448 66.7
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.0e-155 554.3 583 55.4
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 2.2e-155 553.1 510 57.8
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 5.5e-154 548.5 519 57.2
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 3.8e-147 525.8 503 57.5
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.5e-146 523.9 464 60.1
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 1.2e-140 504.2 474 59.3
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 2.3e-139 500.0 398 69.3
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 5.0e-139 498.8 387 68.0
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 9.5e-138 494.6 465 57.8
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.1e-137 493.4 457 59.7
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 8.0e-137 491.5 474 58.0
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.5e-124 449.5 322 75.2
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 3.6e-121 439.5 301 75.4
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 5.2e-120 435.6 511 46.6
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 5.8e-119 432.2 395 60.3
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.9e-118 429.9 289 76.8
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 6.2e-113 412.1 340 65.9
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 5.8e-111 405.6 478 46.9
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 5.6e-106 389.0 520 43.7
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.4e-104 384.4 461 51.2
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.3e-94 351.3 252 73.0
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.4e-93 347.1 456 44.1
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.6e-84 316.2 383 49.6
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 9.6e-82 308.5 263 64.3
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.8e-81 307.0 212 74.5
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 3.1e-72 276.9 194 76.3
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 6.9e-72 275.8 191 72.8
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 1.0e-67 261.9 195 69.7
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 9.7e-66 255.4 429 38.7
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 3.4e-63 246.9 214 65.0
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.1e-60 237.7 663 30.0
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.3e-54 218.4 162 67.3
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.9e-52 209.1 198 56.6
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.6e-47 194.1 189 56.6
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 5.9e-47 193.0 507 31.6
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.0e-46 192.2 97 96.9
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 3.9e-43 180.3 96 97.9
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 1.8e-40 171.4 158 61.4
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-38 165.2 150 56.7
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.0e-38 163.3 104 82.7
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.5e-37 161.8 175 51.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.2e-31 142.1 122 54.1
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.6e-28 131.7 501 27.3
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-28 131.3 153 47.7
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-28 131.3 153 47.7
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 4.7e-28 130.2 111 64.9
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 6.1e-28 129.8 97 61.9
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.6e-26 124.4 86 70.9
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.7e-22 111.7 78 64.1
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.6e-20 105.1 64 79.7
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 6.1e-20 103.2 67 79.1
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.0e-19 102.4 88 67.0
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.0e-19 100.9 49 95.9
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.5e-18 96.3 93 46.2
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 9.8e-18 95.9 62 85.5
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 9.8e-18 95.9 62 85.5
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.7e-17 95.1 56 85.7
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.7e-15 87.8 244 32.8
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 3.9e-14 84.0 80 60.0
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.7e-12 77.0 58 62.1
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 8.9e-11 72.8 55 70.9
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 6.0e-07 60.1 189 28.6
AagrBONN_evm.TU.Sc2ySwM_117.318 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.0e-06 57.8 111 35.1


User provided reference genes

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