Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 0.0e+00 1162.1 699 100.0
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 0.0e+00 1146.0 699 99.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.3e-307 1059.3 700 83.6
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.2e-283 978.8 706 75.4
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 4.8e-278 961.1 698 74.8
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 2.2e-275 952.2 702 74.2
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.4e-240 836.6 709 66.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 9.5e-202 707.6 715 55.4
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 3.2e-197 692.6 720 56.1
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 3.9e-187 659.1 704 52.3
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 5.6e-186 655.2 708 53.4
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.1e-185 653.3 745 51.0
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 9.9e-183 644.4 703 51.4
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.7e-182 643.7 703 51.1
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 8.4e-182 641.3 713 53.2
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.1e-181 641.0 703 50.9
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 9.2e-181 637.9 728 52.2
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 3.5e-180 636.0 706 52.0
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.1e-178 630.9 707 51.5
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.5e-178 630.6 707 51.2
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.1e-176 622.9 711 51.6
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 5.2e-176 622.1 712 50.1
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 7.1e-173 611.7 701 49.8
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.9e-170 603.6 713 50.4
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.3e-170 602.8 716 50.0
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.3e-170 601.7 713 50.2
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 9.6e-170 601.3 717 50.3
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.4e-168 597.4 727 49.7
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 1.8e-168 597.0 717 57.0
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 5.3e-168 595.5 716 49.4
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.5e-167 594.0 713 51.1
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.4e-167 592.8 708 49.3
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 2.4e-165 586.6 605 55.2
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 7.1e-165 585.1 714 50.7
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.7e-164 583.2 723 48.3
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 5.1e-163 578.9 706 47.3
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 8.7e-163 578.2 705 48.1
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 3.7e-161 572.8 661 51.0
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.4e-160 570.9 698 48.7
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 4.5e-159 565.8 706 46.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 8.4e-158 561.6 722 51.2
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.4e-157 560.1 660 49.1
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 2.4e-157 560.1 712 49.0
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 5.5e-157 558.9 718 47.2
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.0e-155 554.7 704 47.9
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 8.7e-155 551.6 704 47.6
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 2.1e-153 547.0 709 48.4
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.4e-152 544.3 678 48.1
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.0e-152 541.6 683 47.7
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 2.7e-148 530.0 712 45.1
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 2.7e-148 530.0 710 45.8
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.8e-147 527.3 712 45.9
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 3.9e-147 526.2 720 49.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 3.9e-147 526.2 718 45.7
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.9e-146 523.9 713 52.2
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.6e-145 520.8 706 45.6
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.8e-145 520.0 713 49.8
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 5.3e-144 515.8 661 51.0
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.2e-143 514.6 703 51.8
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.2e-143 514.6 703 51.8
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.0e-142 511.5 714 45.7
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 2.2e-142 510.4 718 44.0
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.2e-142 510.4 696 51.1
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 5.0e-142 509.2 721 43.4
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 7.2e-141 505.4 711 44.2
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.8e-139 500.7 721 44.0
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 8.8e-139 498.4 716 43.7
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.0e-138 497.3 707 45.3
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 9.7e-138 495.0 707 45.1
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 9.7e-138 495.0 710 44.2
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.1e-136 491.5 712 44.0
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.1e-136 491.5 712 43.4
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.1e-136 491.5 717 43.7
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.8e-136 490.7 712 43.4
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.4e-133 481.1 706 46.9
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 3.2e-133 479.9 709 44.6
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 4.7e-132 476.1 728 43.8
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.0e-131 474.9 675 43.7
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 3.0e-131 473.4 710 45.4
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 8.8e-131 471.9 707 42.6
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 5.3e-128 462.6 570 47.0
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 3.2e-125 453.4 718 41.5
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 3.2e-125 453.4 718 41.5
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 4.2e-125 453.0 701 41.8
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 9.4e-125 451.8 704 42.9
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.5e-122 444.5 722 40.2
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 5.7e-122 442.6 722 40.0
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 2.8e-121 440.3 704 43.8
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.4e-120 437.2 704 45.6
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.5e-119 433.3 455 54.3
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 5.0e-118 429.5 408 55.9
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.2e-114 418.3 666 42.5
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 7.5e-114 415.6 712 43.4
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.1e-112 411.8 701 40.7
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 7.0e-112 409.1 708 42.1
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.6e-111 407.9 709 40.9
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.2e-108 398.3 705 45.5
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 6.1e-108 396.0 357 58.8
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 9.8e-106 388.7 512 46.7
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 6.6e-102 375.9 699 43.5
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 5.4e-96 356.3 712 36.9
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 4.7e-92 343.2 748 36.2
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 6.4e-89 332.8 180 93.3
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.5e-85 320.9 295 56.6
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 4.6e-79 300.1 480 41.0
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 2.8e-76 290.8 475 39.8
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.4e-64 251.9 127 96.9
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.6e-60 238.4 335 47.2
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.3e-49 202.2 517 31.3
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 2.2e-49 201.4 273 45.4
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 7.1e-48 196.4 275 42.2
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.0e-46 192.6 574 30.5
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.3e-44 185.7 131 70.2
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.5e-40 171.4 139 61.2
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 4.0e-35 154.1 140 62.9
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-31 142.5 168 48.8
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.6e-31 142.1 113 61.1
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 2.1e-31 141.7 595 26.9
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.1e-31 141.7 376 35.4
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.3e-29 134.4 102 65.7
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 9.7e-29 132.9 515 27.8
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 6.3e-28 130.2 200 40.0
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.8e-27 128.6 502 26.9
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 2.7e-23 114.8 584 23.5
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.6e-23 114.0 75 69.3
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 4.1e-19 100.9 50 98.0
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.2e-18 99.4 135 41.5
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 7.7e-18 96.7 109 47.7
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 5.0e-17 94.0 266 39.8
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.7e-15 88.2 138 43.5
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 7.9e-15 86.7 128 37.5
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 7.9e-15 86.7 75 61.3
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 3.0e-14 84.7 78 57.7
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 2.2e-12 78.6 252 36.5
Solyc02g062813.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.1e-11 76.3 37 97.3
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.6e-10 71.6 132 41.7
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 5.0e-09 67.4 66 48.5
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 8.5e-09 66.6 72 54.2


User provided reference genes

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