Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 4.3e-118 427.9 208 100.0
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 5.8e-115 417.5 209 98.1
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 5.7e-94 347.8 185 90.3
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 1.7e-93 346.3 184 90.2
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 1.4e-89 333.2 162 97.5
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 1.8e-79 299.7 184 79.3
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 3.0e-79 298.9 183 77.0
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.4e-76 290.0 184 72.3
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 1.8e-76 289.7 184 72.8
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 4.1e-76 288.5 182 73.1
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 4.1e-76 288.5 182 73.1
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 7.0e-76 287.7 181 72.9
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 2.7e-75 285.8 179 72.1
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 7.7e-75 284.3 179 75.4
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 7.7e-75 284.3 179 75.4
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 1.7e-74 283.1 185 73.5
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 2.2e-74 282.7 181 73.5
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 3.8e-74 282.0 186 69.4
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 8.5e-74 280.8 186 67.7
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 1.1e-73 280.4 185 68.1
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 1.1e-73 280.4 183 69.9
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 1.5e-73 280.0 183 72.7
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 5.5e-73 278.1 187 69.0
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 7.2e-73 277.7 183 69.4
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 7.2e-73 277.7 185 70.3
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 9.4e-73 277.3 183 71.6
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 1.2e-72 276.9 181 72.4
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 1.2e-72 276.9 183 69.9
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.1e-72 276.2 200 67.0
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 2.1e-72 276.2 186 67.7
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 2.7e-72 275.8 181 70.2
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 3.6e-72 275.4 180 70.0
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 3.6e-72 275.4 187 68.4
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 3.6e-72 275.4 187 68.4
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 3.6e-72 275.4 180 70.0
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 3.6e-72 275.4 182 72.0
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 3.6e-72 275.4 179 70.9
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.8e-71 273.1 179 69.3
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.8e-71 273.1 186 69.4
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 2.3e-71 272.7 182 71.4
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 3.0e-71 272.3 181 70.7
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 4.0e-71 271.9 186 67.2
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 5.2e-71 271.6 180 71.7
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 8.8e-71 270.8 181 70.7
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 1.5e-70 270.0 182 70.3
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 2.6e-70 269.2 184 66.8
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 3.4e-70 268.9 183 67.8
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 3.4e-70 268.9 186 67.2
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 4.4e-70 268.5 181 67.4
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 9.8e-70 267.3 179 70.9
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 1.7e-69 266.5 184 68.5
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 2.2e-69 266.2 187 67.4
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 2.8e-69 265.8 181 71.3
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 8.3e-69 264.2 184 66.3
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 1.4e-68 263.5 175 70.9
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 3.1e-68 262.3 181 66.9
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 3.1e-68 262.3 184 66.8
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 7.0e-68 261.2 184 66.8
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 9.1e-68 260.8 184 67.9
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 1.2e-67 260.4 180 67.2
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 1.6e-67 260.0 180 68.3
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 2.0e-67 259.6 184 65.2
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 3.5e-67 258.8 180 67.8
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 7.7e-67 257.7 181 66.3
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 1.3e-66 256.9 179 65.9
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 1.7e-66 256.5 178 68.0
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 1.7e-66 256.5 179 67.0
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 2.3e-66 256.1 166 71.7
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 6.6e-66 254.6 180 67.8
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 1.1e-65 253.8 166 70.5
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 4.2e-65 251.9 181 63.5
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 4.2e-65 251.9 156 74.4
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 7.2e-65 251.1 184 63.6
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 1.6e-64 250.0 183 63.9
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 4.7e-64 248.4 181 63.0
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 4.7e-64 248.4 181 61.9
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 8.0e-64 247.7 179 65.9
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 1.0e-63 247.3 181 61.9
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 1.0e-63 247.3 181 61.9
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 1.8e-63 246.5 177 64.4
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 2.3e-63 246.1 181 62.4
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 6.8e-63 244.6 182 63.2
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 3.4e-62 242.3 156 71.2
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 3.4e-62 242.3 183 61.2
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 4.9e-61 238.4 182 60.4
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 2.3e-58 229.6 155 64.5
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 1.9e-57 226.5 143 72.7
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 3.3e-57 225.7 184 62.5
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 9.5e-57 224.2 154 66.9
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 1.0e-55 220.7 166 63.3
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.8e-55 219.9 156 68.6
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 1.2e-54 217.2 183 58.5
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 4.1e-52 208.8 191 50.3
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 1.2e-51 207.2 175 54.9
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 1.6e-51 206.8 182 57.1
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 2.7e-51 206.1 180 59.4
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 7.3e-49 198.0 203 50.2
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 1.1e-47 194.1 181 49.2
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 2.3e-47 193.0 179 47.5
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.2e-46 190.7 121 71.9
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.2e-46 190.7 121 71.9
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 1.9e-44 183.3 186 53.2
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 4.1e-44 182.2 119 67.2
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 3.1e-39 166.0 107 67.3
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 3.4e-38 162.5 160 50.6
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 1.9e-36 156.8 196 41.3
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 7.3e-33 144.8 92 72.8
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 8.9e-31 137.9 81 74.1
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 7.6e-30 134.8 251 36.3
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 3.9e-26 122.5 77 72.7
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 1.2e-24 117.5 91 60.4
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 1.4e-23 114.0 155 37.4
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 2.6e-22 109.8 79 64.6
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 2.7e-19 99.8 70 64.3
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 2.0e-14 83.6 119 37.8
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 2.0e-14 83.6 62 62.9
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 3.4e-14 82.8 200 31.5
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 4.9e-13 79.0 58 63.8
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 2.1e-11 73.6 55 65.5
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 6.0e-11 72.0 57 59.6
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 1.3e-10 70.9 47 68.1


User provided reference genes

Program Settings