Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 3.4e-289 997.7 510 100.0
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 4.1e-279 964.1 510 96.7
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 9.8e-265 916.4 512 92.6
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.6e-196 689.1 504 72.0
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 3.1e-162 575.9 508 62.6
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.6e-158 562.4 513 60.6
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.1e-154 550.8 515 59.8
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.9e-147 525.4 513 59.1
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 9.5e-143 511.1 514 57.2
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.4e-130 468.8 511 54.8
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 6.2e-126 455.3 518 51.2
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 1.6e-121 440.7 510 50.6
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 8.1e-118 428.3 516 50.4
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 4.9e-115 419.1 526 50.0
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 7.1e-114 415.2 520 48.8
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.1e-109 399.8 476 52.5
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-108 397.9 520 47.1
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 5.8e-108 395.6 507 46.5
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 2.4e-106 390.2 522 46.4
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.6e-105 387.5 508 46.5
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 6.0e-105 385.6 533 44.8
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 5.1e-104 382.5 508 46.3
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 2.8e-102 376.7 505 45.7
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.5e-100 370.9 506 47.8
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.7e-99 367.5 515 45.0
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 7.1e-98 362.1 504 45.4
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.6e-97 360.9 533 43.3
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.6e-97 360.9 496 45.6
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 3.5e-97 359.8 510 44.5
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.0e-96 358.2 515 44.9
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 2.3e-96 357.1 533 43.2
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 4.3e-95 352.8 505 44.4
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 5.7e-95 352.4 512 43.0
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 3.7e-94 349.7 512 44.3
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 8.2e-94 348.6 514 44.4
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.1e-93 346.7 519 43.5
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 9.0e-93 345.1 534 43.6
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 5.9e-92 342.4 514 42.8
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.0e-91 341.7 528 41.5
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.0e-91 341.7 515 42.5
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.3e-91 341.3 489 45.6
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 3.8e-91 339.7 532 40.6
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 3.8e-91 339.7 527 42.3
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 5.0e-91 339.3 523 43.4
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.4e-90 337.8 508 43.3
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.4e-90 337.8 512 43.4
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.4e-90 337.8 556 41.7
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 5.5e-90 335.9 520 42.7
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 5.5e-90 335.9 631 38.2
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.2e-89 334.7 515 43.5
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.8e-88 330.9 509 43.0
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 5.1e-88 329.3 514 43.4
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 6.7e-88 328.9 518 42.1
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.9e-87 327.4 526 42.6
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 4.3e-87 326.2 512 43.0
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 7.4e-87 325.5 521 42.2
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.2e-86 323.9 532 41.2
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 4.8e-86 322.8 514 42.0
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 6.3e-86 322.4 533 42.0
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 8.2e-86 322.0 514 42.0
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 9.1e-85 318.5 528 42.4
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.2e-84 318.2 502 40.4
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.3e-83 314.7 520 41.0
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.7e-83 314.3 295 59.0
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.9e-83 313.5 533 41.1
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.4e-82 311.2 371 50.9
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 4.2e-82 309.7 282 57.4
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 5.5e-82 309.3 549 38.4
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 4.4e-79 299.7 513 40.4
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 7.4e-79 298.9 526 38.8
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-77 295.0 531 40.1
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 2.4e-77 293.9 531 40.1
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.4e-77 293.9 531 40.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.1e-77 293.5 542 39.3
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 3.1e-77 293.5 510 38.0
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.6e-76 290.4 508 39.6
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 2.6e-76 290.4 548 38.9
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 4.2e-74 283.1 291 55.0
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 3.6e-73 280.0 503 37.4
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 8.0e-73 278.9 515 38.6
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 9.7e-71 271.9 524 38.5
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 9.7e-71 271.9 305 50.2
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.7e-70 271.2 337 47.5
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.7e-70 271.2 396 42.7
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.2e-70 270.8 289 52.2
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 3.7e-70 270.0 288 52.4
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 4.8e-70 269.6 289 51.9
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 2.4e-69 267.3 290 52.8
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.4e-69 267.3 289 51.6
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 3.1e-69 266.9 289 52.2
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 3.1e-69 266.9 289 51.6
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 3.1e-69 266.9 289 51.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 3.1e-69 266.9 289 51.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 7.0e-69 265.8 383 43.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.2e-68 265.0 512 37.3
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 7.7e-68 262.3 383 43.3
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 7.7e-68 262.3 296 51.0
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 7.7e-68 262.3 296 51.0
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 7.7e-68 262.3 296 51.0
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.0e-67 261.9 290 51.0
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.3e-67 261.5 510 37.3
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.3e-67 261.5 503 35.4
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 8.8e-64 248.8 379 44.3
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.5e-63 248.1 364 43.4
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.0e-63 247.7 291 47.8
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 2.0e-63 247.7 226 57.5
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-63 247.3 542 36.2
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 5.7e-63 246.1 481 38.7
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 6.1e-57 226.1 276 46.4
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 6.8e-56 222.6 530 36.8
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.0e-55 221.1 432 38.4
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.3e-54 218.4 279 46.6
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.3e-54 218.4 352 40.1
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 4.8e-54 216.5 269 45.7
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-53 214.9 269 45.4
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 2.4e-53 214.2 288 43.8
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.1e-53 213.4 269 45.4
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.2e-52 211.8 266 46.2
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.6e-52 211.5 278 48.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 3.5e-52 210.3 520 34.4
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.2e-50 203.4 269 45.0
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.0e-47 194.5 287 40.8
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.4e-45 188.3 407 38.1
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.5e-44 183.3 425 35.8
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.8e-43 180.3 286 43.0
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.7e-41 173.3 381 34.4
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.7e-38 164.9 367 36.2
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.4e-37 161.0 124 62.1
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.5e-34 151.8 157 55.4
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.1e-32 144.1 279 35.5
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.6e-31 141.0 163 46.0
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 2.9e-30 137.5 124 52.4
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 4.1e-29 133.7 100 64.0
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-23 114.4 353 33.4
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 4.4e-23 113.6 395 31.6
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 2.1e-20 104.8 315 25.7
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.6e-20 103.6 119 44.5
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 3.0e-19 100.9 164 36.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.1e-18 99.0 100 54.0
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.2e-17 93.2 134 46.3
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 4.2e-13 80.5 123 43.1
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 9.2e-13 79.3 125 41.6
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 9.2e-13 79.3 291 25.4
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.7e-12 77.8 130 39.2
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.8e-08 65.1 51 54.9
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 8.4e-06 56.2 295 25.4


User provided reference genes

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