Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 8.4e-168 593.6 294 100.0
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 8.2e-155 550.4 279 96.8
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 3.8e-152 541.6 366 77.9
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.4e-125 453.4 263 85.2
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.1e-122 443.7 267 79.8
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.1e-122 440.7 266 78.9
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 7.5e-116 421.0 286 74.1
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 6.8e-101 371.3 294 62.2
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 3.2e-98 362.5 267 63.3
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 2.7e-97 359.4 267 62.9
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.0e-96 355.9 295 57.6
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 5.0e-96 355.1 311 57.6
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 3.3e-95 352.4 267 62.5
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 3.6e-94 349.0 296 58.4
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 4.7e-94 348.6 296 58.8
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 3.1e-93 345.9 267 61.4
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.2e-92 344.0 264 64.0
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 2.0e-92 343.2 297 57.6
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 3.7e-91 339.0 269 59.9
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 6.4e-91 338.2 269 61.0
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 9.2e-90 334.3 285 60.0
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 2.7e-89 332.8 267 61.4
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 2.7e-89 332.8 269 58.4
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 3.5e-89 332.4 269 60.2
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 7.8e-89 331.3 271 60.5
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 2.3e-88 329.7 267 60.3
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 2.3e-88 329.7 269 61.0
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 3.0e-88 329.3 269 59.5
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 3.9e-88 328.9 296 58.1
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 3.9e-88 328.9 267 61.0
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 5.0e-88 328.6 270 58.5
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 6.6e-88 328.2 267 61.0
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 8.6e-88 327.8 269 61.3
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.5e-87 327.0 267 60.7
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.5e-87 326.2 269 60.2
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 2.5e-87 326.2 269 60.2
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.3e-87 325.9 266 60.2
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 3.3e-87 325.9 302 55.0
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 4.3e-87 325.5 267 59.6
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 5.6e-87 325.1 276 58.3
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 9.5e-87 324.3 263 57.4
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 4.7e-86 322.0 269 59.1
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 8.1e-86 321.2 267 59.9
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 4.0e-85 318.9 274 58.0
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 4.0e-85 318.9 274 58.0
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 5.2e-85 318.5 260 60.4
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 6.8e-85 318.2 268 57.8
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 4.4e-84 315.5 295 54.9
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 4.4e-84 315.5 260 59.6
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 4.4e-84 315.5 260 59.6
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 9.8e-84 314.3 304 54.3
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 9.8e-84 314.3 267 58.8
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.3e-83 313.9 260 59.6
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.3e-83 313.9 260 59.6
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 2.2e-83 313.2 270 58.9
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 2.2e-83 313.2 266 58.3
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 2.2e-83 313.2 266 58.3
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 2.9e-83 312.8 300 53.0
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 4.9e-83 312.0 245 61.2
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 6.4e-83 311.6 294 55.1
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 8.3e-83 311.2 267 57.7
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 8.3e-83 311.2 269 56.5
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 8.3e-83 311.2 269 57.6
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-82 310.8 260 59.2
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-82 310.8 272 57.7
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.4e-82 310.5 260 59.2
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.4e-82 310.5 272 56.2
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 3.2e-82 309.3 265 56.6
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.2e-82 309.3 268 57.8
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 3.2e-82 309.3 266 58.3
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 4.1e-82 308.9 269 56.5
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 7.1e-82 308.1 296 53.4
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.2e-81 307.4 266 57.5
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.2e-81 307.4 288 54.5
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 6.0e-81 305.1 256 60.5
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.0e-80 304.3 268 58.6
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 1.0e-80 304.3 269 55.4
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 1.3e-80 303.9 269 55.4
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 2.3e-80 303.1 266 56.0
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 6.6e-80 301.6 245 62.4
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 9.5e-79 297.7 292 52.4
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 2.1e-78 296.6 263 54.8
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.8e-77 293.5 252 56.7
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 2.3e-77 293.1 270 53.0
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 8.9e-77 291.2 256 54.7
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 8.9e-77 291.2 304 49.7
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 2.0e-76 290.0 270 52.6
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 9.9e-76 287.7 263 53.2
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 3.8e-75 285.8 250 55.2
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.4e-74 283.9 251 57.4
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 3.2e-74 282.7 269 52.4
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.2e-73 280.8 294 53.7
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 2.7e-73 279.6 287 50.9
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.7e-72 276.9 293 47.8
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.7e-72 276.9 269 52.0
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 4.3e-71 272.3 268 51.5
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 1.2e-70 270.8 216 61.1
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 1.4e-69 267.3 285 49.8
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.5e-68 263.8 269 51.3
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 2.0e-68 263.5 237 55.7
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 9.3e-66 254.6 249 52.2
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 1.0e-64 251.1 228 57.9
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 2.3e-64 250.0 259 46.7
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 6.6e-64 248.4 271 45.8
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 5.6e-63 245.4 293 41.3
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 4.0e-61 239.2 359 38.4
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 5.3e-61 238.8 271 45.4
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 4.5e-60 235.7 265 46.8
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 7.6e-60 235.0 254 47.6
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.3e-56 223.4 195 53.8
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 2.1e-54 216.9 194 56.2
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 6.2e-54 215.3 277 40.8
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-53 214.2 219 49.3
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-53 214.2 219 49.3
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-50 204.1 219 49.3
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.6e-49 200.7 219 48.9
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.8e-48 197.2 225 46.2
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 3.4e-44 183.0 249 41.0
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 4.2e-42 176.0 190 45.8
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 2.1e-41 173.7 210 42.9
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.5e-39 166.8 123 64.2
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 1.3e-38 164.5 275 34.5
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 8.2e-38 161.8 424 27.4
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 1.1e-37 161.4 185 45.9
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 6.9e-37 158.7 135 59.3
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 2.1e-33 147.1 162 48.1
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 7.9e-33 145.2 307 30.0
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 2.0e-28 130.6 395 26.6
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 2.6e-28 130.2 139 53.2
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 1.1e-26 124.8 352 28.1
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 3.6e-25 119.8 74 70.3
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.1e-23 114.8 103 56.3
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 2.6e-23 113.6 129 51.9
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.3e-23 113.2 83 63.9
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 5.7e-23 112.5 154 39.6
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 1.2e-20 104.8 154 34.4
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 3.4e-20 103.2 139 43.2
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 7.7e-20 102.1 53 83.0
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.9e-19 100.1 57 80.7
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.2e-16 89.4 56 73.2
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 9.1e-13 78.6 166 31.3
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.3e-11 74.7 195 29.7
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-08 64.3 29 96.6
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 3.0e-08 63.5 40 65.0
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 8.8e-08 62.0 38 65.8
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 9.7e-07 58.5 38 57.9


User provided reference genes

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