Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 5.2e-66 254.6 166 100.0
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 3.9e-61 238.4 170 91.2
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 9.6e-60 233.8 166 86.7
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 2.5e-28 129.4 117 62.4
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 4.2e-23 112.1 123 55.3
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 2.1e-22 109.8 118 52.5
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 3.5e-22 109.0 123 56.9
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 1.0e-21 107.5 121 52.9
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 1.8e-21 106.7 113 49.6
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 3.9e-21 105.5 122 56.6
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 6.7e-21 104.8 114 55.3
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 1.5e-20 103.6 124 49.2
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.7e-20 101.7 120 52.5
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 7.4e-20 101.3 113 53.1
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.3e-19 100.5 119 52.9
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 1.6e-19 100.1 119 52.1
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 2.2e-19 99.8 121 45.5
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 2.8e-19 99.4 121 53.7
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.8e-19 99.4 118 48.3
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 2.8e-19 99.4 120 50.8
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 4.8e-19 98.6 116 50.9
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 6.3e-19 98.2 115 50.4
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 6.3e-19 98.2 124 46.0
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 8.2e-19 97.8 116 47.4
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 1.4e-18 97.1 113 47.8
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 2.4e-18 96.3 118 48.3
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 4.1e-18 95.5 119 52.1
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 6.9e-18 94.7 110 47.3
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 1.2e-17 94.0 113 45.1
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 4.5e-17 92.0 115 48.7
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 4.5e-17 92.0 109 51.4
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.9e-17 91.7 109 46.8
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.0e-16 90.9 124 42.7
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.3e-16 90.5 118 43.2
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 1.3e-16 90.5 109 45.9
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 1.3e-16 90.5 112 48.2
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 2.2e-16 89.7 114 46.5
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 3.8e-16 89.0 118 44.9
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 5.0e-16 88.6 117 47.9
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 6.5e-16 88.2 109 45.0
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 6.5e-16 88.2 115 45.2
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 8.5e-16 87.8 109 44.0
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 1.1e-15 87.4 110 47.3
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 1.1e-15 87.4 116 46.6
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.4e-15 87.0 109 45.0
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 3.2e-15 85.9 112 46.4
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 3.2e-15 85.9 114 43.9
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 4.2e-15 85.5 123 44.7
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 4.2e-15 85.5 119 41.2
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 5.5e-15 85.1 121 46.3
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.2e-14 84.0 113 43.4
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 1.6e-14 83.6 118 41.5
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 1.6e-14 83.6 162 37.7
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 1.6e-14 83.6 111 45.0
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 2.1e-14 83.2 112 46.4
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.7e-14 82.8 113 42.5
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 3.6e-14 82.4 113 42.5
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.6e-14 82.4 113 43.4
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.6e-14 82.4 113 42.5
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 3.6e-14 82.4 112 45.5
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 3.6e-14 82.4 115 43.5
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 4.6e-14 82.0 117 41.9
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 6.1e-14 81.6 121 38.0
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 6.1e-14 81.6 113 45.1
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 6.1e-14 81.6 117 44.4
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 6.1e-14 81.6 126 39.7
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 7.9e-14 81.3 108 44.4
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 7.9e-14 81.3 110 45.5
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 7.9e-14 81.3 121 41.3
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 1.4e-13 80.5 117 42.7
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.8e-13 80.1 119 42.0
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 2.3e-13 79.7 112 45.5
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 3.0e-13 79.3 116 43.1
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 3.9e-13 79.0 121 40.5
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 3.9e-13 79.0 125 40.0
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 3.9e-13 79.0 113 42.5
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 5.1e-13 78.6 120 40.8
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 1.1e-12 77.4 133 39.8
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 2.0e-12 76.6 113 42.5
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 3.3e-12 75.9 121 42.1
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 4.3e-12 75.5 113 40.7
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 5.7e-12 75.1 113 39.8
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 5.7e-12 75.1 111 42.3
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 9.7e-12 74.3 121 38.0
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 2.2e-11 73.2 68 61.8
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 3.7e-11 72.4 144 39.6
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 4.8e-11 72.0 109 43.1
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 1.8e-10 70.1 116 38.8
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.3e-10 68.6 109 36.7
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.3e-10 68.6 109 36.7
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 9.1e-10 67.8 113 39.8
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.5e-09 67.0 92 53.3
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 3.4e-09 65.9 115 35.7
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 4.5e-09 65.5 107 37.4
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 1.3e-08 63.9 128 35.2
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 1.3e-08 63.9 114 36.0
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 1.7e-08 63.5 116 38.8
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 2.2e-08 63.2 113 38.1
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 2.9e-08 62.8 128 34.4
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 6.5e-08 61.6 101 39.6
Peaxi162Scf00191g01430 Petunia axillaris HOM05D006065 ORTHO05D007672 1.4e-07 60.5 73 54.8
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 1.9e-07 60.1 112 36.6
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 1.9e-07 60.1 112 36.6
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 1.9e-07 60.1 112 36.6
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 2.5e-07 59.7 98 41.8
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 4.2e-07 58.9 67 49.3
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 5.5e-07 58.5 109 36.7
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 7.2e-07 58.2 112 34.8
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 7.2e-07 58.2 112 34.8
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 7.2e-07 58.2 112 34.8
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 1.6e-06 57.0 112 33.0
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 6.1e-06 55.1 122 32.8


User provided reference genes

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