Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g049930.1 Solanum lycopersicum HOM05D002420 ORTHO05D002422 8.0e-88 327.0 160 100.0
Sopen05g028290 Solanum pennellii HOM05D002420 ORTHO05D002422 3.7e-85 318.2 159 98.1
Solyc01g097630.3 Solanum lycopersicum HOM05D002420 ORTHO05D002422 6.6e-82 307.4 159 91.8
Sopen00g008500 Solanum pennellii HOM05D002420 ORTHO05D002422 4.2e-81 304.7 159 91.2
Sopen01g041250 Solanum pennellii HOM05D002230 ORTHO05D002441 4.2e-81 304.7 159 91.2
Sopen01g040930 Solanum pennellii HOM05D002420 ORTHO05D002422 3.6e-80 301.6 159 91.8
PGSC0003DMG402019442 Solanum tuberosum HOM05D002420 ORTHO05D002422 9.8e-78 293.5 172 83.7
PGSC0003DMG401019442 Solanum tuberosum HOM05D002420 ORTHO05D002422 4.9e-77 291.2 172 83.1
CAN.G134.123 Capsicum annuum HOM05D002420 ORTHO05D002422 1.2e-51 206.8 160 65.0
Sopen05g028260 Solanum pennellii HOM05D002420 ORTHO05D002422 5.1e-50 201.4 159 68.6
PGSC0003DMG400019443 Solanum tuberosum HOM05D002420 ORTHO05D002422 1.5e-49 199.9 161 63.4
CAN.G358.108 Capsicum annuum HOM05D002420 ORTHO05D002422 7.3e-41 171.0 121 71.1
PGSC0003DMG400014891 Solanum tuberosum HOM05D002420 ORTHO05D002422 2.8e-40 169.1 163 55.8
Nitab4.5_0000434g0050 Nicotiana tabacum HOM05D002420 ORTHO05D002422 5.3e-39 164.9 125 66.4
Nitab4.5_0001827g0080 Nicotiana tabacum HOM05D002420 ORTHO05D002422 1.5e-38 163.3 123 65.9
Solyc05g049910.3 Solanum lycopersicum HOM05D002420 ORTHO05D002422 2.0e-38 162.9 159 59.7
Nitab4.5_0000136g0430 Nicotiana tabacum HOM05D002420 ORTHO05D002422 2.9e-37 159.1 116 66.4
Nitab4.5_0003233g0040 Nicotiana tabacum HOM05D002420 ORTHO05D002422 1.4e-36 156.8 116 65.5
Peaxi162Scf00515g00043 Petunia axillaris HOM05D002420 ORTHO05D002422 3.2e-36 155.6 112 67.0
Solyc02g085440.4 Solanum lycopersicum HOM05D002420 ORTHO05D002422 5.4e-36 154.8 163 50.3
Sopen02g030120 Solanum pennellii HOM05D002420 ORTHO05D002422 7.1e-36 154.5 163 50.9
Peaxi162Scf00008g00373 Petunia axillaris HOM05D002420 ORTHO05D002422 9.3e-36 154.1 146 56.2
CAN.G53.20 Capsicum annuum HOM05D002420 ORTHO05D002422 5.1e-34 148.3 167 47.9
PGSC0003DMG400015473 Solanum tuberosum HOM05D002420 ORTHO05D002422 1.7e-29 133.3 156 46.8
Solyc02g062800.2 Solanum lycopersicum HOM05D002420 ORTHO05D002422 6.4e-29 131.3 118 55.9
Sopen02g013840 Solanum pennellii HOM05D002420 ORTHO05D002422 6.4e-29 131.3 116 56.9
MSTRG.3832 Avicennia marina HOM05D002420 ORTHO05D002422 1.1e-25 120.6 102 57.8
Oeu024879.1 Olea europaea HOM05D002420 ORTHO05D002422 4.3e-25 118.6 133 45.9
CSS0039427 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 2.1e-24 116.3 108 50.9
Dinv26823 Davidia involucrata HOM05D002420 ORTHO05D002422 3.7e-24 115.5 120 46.7
Migut.H02492 Erythranthe guttata HOM05D002420 ORTHO05D002422 1.8e-23 113.2 115 51.3
SalBow8G3676 Salvia bowleyana HOM05D002420 ORTHO05D002422 1.2e-22 110.5 102 53.9
Duzib187G1349 Durio zibethinus HOM05D002420 ORTHO05D002422 1.5e-22 110.2 155 39.4
Hma1.2p1_0400F.1_g144530 Hydrangea macrophylla HOM05D002420 ORTHO05D002422 3.4e-22 109.0 114 47.4
Gohir.A11G185000 Gossypium hirsutum HOM05D002420 ORTHO05D002422 4.5e-22 108.6 120 42.5
Ciclev10025746m.g Citrus clementina HOM05D002420 ORTHO05D002422 2.2e-21 106.3 161 34.8
Cpa.g.sc544.2 Carica papaya HOM05D002420 ORTHO05D002422 2.9e-21 105.9 114 43.9
FvH4_1g13470 Fragaria vesca HOM05D002420 ORTHO05D002422 2.9e-21 105.9 104 45.2
FAN19G1320 Fragaria x ananassa HOM05D002420 ORTHO05D002422 2.9e-21 105.9 104 45.2
FAN23G2135 Fragaria x ananassa HOM05D002420 ORTHO05D002422 3.8e-21 105.5 104 44.2
FAN26G2215 Fragaria x ananassa HOM05D002420 ORTHO05D002422 3.8e-21 105.5 104 45.2
FAN28G0805 Fragaria x ananassa HOM05D002420 ORTHO05D002422 3.8e-21 105.5 104 44.2
Gohir.D11G191500 Gossypium hirsutum HOM05D002420 ORTHO05D002422 3.8e-21 105.5 120 40.8
Gorai.007G204100 Gossypium raimondii HOM05D002420 ORTHO05D002422 3.8e-21 105.5 120 40.8
Thecc.01G037600 Theobroma cacao HOM05D002420 ORTHO05D002422 3.8e-21 105.5 105 47.6
COL.COLO4_22097 Corchorus olitorius HOM05D002420 ORTHO05D002422 8.4e-21 104.4 159 35.8
HanXRQChr14g0441221 Helianthus annuus HOM05D002420 ORTHO05D002422 8.4e-21 104.4 100 50.0
RcHm_v2.0_Chr2g0101871 Rosa chinensis HOM05D002420 ORTHO05D002422 2.5e-20 102.8 105 43.8
Prupe.7G153000 Prunus persica HOM05D002420 ORTHO05D002422 4.2e-20 102.1 116 44.0
SGA_v2.0_scaffold34G13656 Striga asiatica HOM05D002420 ORTHO05D002422 5.5e-20 101.7 104 42.3
Potri.005G124500 Populus trichocarpa HOM05D002420 ORTHO05D002422 7.1e-20 101.3 157 36.9
Sed0001582 Sechium edule HOM05D002420 ORTHO05D002422 7.1e-20 101.3 108 46.3
QL06p045710 Quercus lobata HOM05D002420 ORTHO05D002422 1.6e-19 100.1 170 35.3
DCAR_021443 Daucus carota HOM05D002420 ORTHO05D002422 2.1e-19 99.8 115 43.5
Duzib147G0480 Durio zibethinus HOM05D002420 ORTHO05D002422 2.1e-19 99.8 172 33.1
FAN19G0041 Fragaria x ananassa HOM05D002420 ORTHO05D002422 2.1e-19 99.8 105 44.8
RcHm_v2.0_Chr2g0101851 Rosa chinensis HOM05D002420 ORTHO05D002422 2.1e-19 99.8 104 41.3
RcHm_v2.0_Chr2g0101881 Rosa chinensis HOM05D002420 ORTHO05D002422 2.1e-19 99.8 102 47.1
Ciclev10025934m.g Citrus clementina HOM05D002420 ORTHO05D002422 2.7e-19 99.4 102 47.1
CiPaw.01G036200 Carya illinoinensis HOM05D002420 ORTHO05D002422 3.5e-19 99.0 102 46.1
Lsat_1_v5_gn_2_76641 Lactuca sativa HOM05D002420 ORTHO05D002422 4.6e-19 98.6 116 43.1
MD02G1150300 Malus domestica HOM05D002420 ORTHO05D002422 4.6e-19 98.6 102 47.1
FAN23G1316 Fragaria x ananassa HOM05D002420 ORTHO05D002422 6.0e-19 98.2 95 44.2
FAN28G2838 Fragaria x ananassa HOM05D002420 ORTHO05D002422 6.0e-19 98.2 102 46.1
Haze_15106 Corylus avellana HOM05D002420 ORTHO05D002422 7.9e-19 97.8 102 46.1
Sabra07G0023700 Salix brachista HOM05D002420 ORTHO05D002422 7.9e-19 97.8 122 41.0
TAR376G1077 Trochodendron aralioides HOM05D002420 ORTHO05D002422 7.9e-19 97.8 109 42.2
CiPaw.01G036300 Carya illinoinensis HOM05D002420 ORTHO05D002422 1.0e-18 97.4 100 47.0
FvH4_1g13490 Fragaria vesca HOM05D002420 ORTHO05D002422 1.3e-18 97.1 102 46.1
FAN19G1318 Fragaria x ananassa HOM05D002420 ORTHO05D002422 1.3e-18 97.1 102 46.1
Manes.02G092400 Manihot esculenta HOM05D002420 ORTHO05D002422 1.3e-18 97.1 165 38.2
Potri.007G027200 Populus trichocarpa HOM05D002420 ORTHO05D002422 1.8e-18 96.7 124 38.7
CANSAT01G0893 Cannabis sativa HOM05D002420 ORTHO05D002422 2.3e-18 96.3 144 38.2
MD02G1150100 Malus domestica HOM05D002420 ORTHO05D002422 2.3e-18 96.3 116 42.2
QL06p045688 Quercus lobata HOM05D002420 ORTHO05D002422 3.0e-18 95.9 102 43.1
Dinv39969 Davidia involucrata HOM05D002420 ORTHO05D002422 3.9e-18 95.5 102 45.1
Prupe.7G152900 Prunus persica HOM05D002420 ORTHO05D002422 3.9e-18 95.5 122 38.5
GSVIVG01018983001 Vitis vinifera HOM05D002420 ORTHO05D002422 3.9e-18 95.5 124 40.3
Cfa004296 Carpinus fangiana HOM05D002420 ORTHO05D002422 5.1e-18 95.1 102 45.1
Atru.chr3.556 Acer truncatum HOM05D002420 ORTHO05D002422 6.7e-18 94.7 102 45.1
MD15G1264700 Malus domestica HOM05D002420 ORTHO05D002422 6.7e-18 94.7 102 44.1
CSS0047153 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 1.1e-17 94.0 102 44.1
ECA238G1939 Erigeron canadensis HOM05D002420 ORTHO05D002422 1.1e-17 94.0 116 40.5
Duzib147G0753 Durio zibethinus HOM05D002420 ORTHO05D002422 1.5e-17 93.6 102 46.1
FAN23G1330 Fragaria x ananassa HOM05D002420 ORTHO05D002422 1.5e-17 93.6 102 45.1
Prupe.7G152800 Prunus persica HOM05D002420 ORTHO05D002422 1.5e-17 93.6 103 44.7
Rhsim08G0114200 Rhododendron simsii HOM05D002420 ORTHO05D002422 1.5e-17 93.6 114 40.4
MD15G1264800 Malus domestica HOM05D002420 ORTHO05D002422 2.5e-17 92.8 102 44.1
Potri.007G027300 Populus trichocarpa HOM05D002420 ORTHO05D002422 3.3e-17 92.4 114 43.0
Hma1.2p1_0400F.1_g144540 Hydrangea macrophylla HOM05D002420 ORTHO05D002422 4.3e-17 92.0 114 41.2
Manes.18G080900 Manihot esculenta HOM05D002420 ORTHO05D002422 4.3e-17 92.0 102 44.1
vmacro17847 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 4.3e-17 92.0 114 38.6
Cc07_g09370 Coffea canephora HOM05D002420 ORTHO05D002422 5.6e-17 91.7 117 41.0
Manes.18G080800 Manihot esculenta HOM05D002420 ORTHO05D002422 5.6e-17 91.7 102 43.1
FvH4_1g13480 Fragaria vesca HOM05D002420 ORTHO05D002422 7.4e-17 91.3 95 46.3
Lsat_1_v5_gn_4_150760 Lactuca sativa HOM05D002420 ORTHO05D002422 7.4e-17 91.3 120 41.7
Sabra05G0102300 Salix brachista HOM05D002420 ORTHO05D002422 7.4e-17 91.3 102 43.1
CAN.G358.109 Capsicum annuum HOM05D002420 ORTHO05D002422 9.6e-17 90.9 102 46.1
MD02G1150200 Malus domestica HOM05D002420 ORTHO05D002422 9.6e-17 90.9 113 41.6
Lsat_1_v5_gn_4_183980 Lactuca sativa HOM05D002420 ORTHO05D002422 1.3e-16 90.5 116 37.9
SGA_v2.0_scaffold47G17662 Striga asiatica HOM05D002420 ORTHO05D002422 1.3e-16 90.5 99 41.4
Aqoxy6G01076 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 1.6e-16 90.1 113 38.1
CSS0029544 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 2.1e-16 89.7 102 43.1
COL.COLO4_22098 Corchorus olitorius HOM05D002420 ORTHO05D002422 2.1e-16 89.7 102 43.1
Sopen02g030130 Solanum pennellii HOM05D002420 ORTHO05D002422 2.1e-16 89.7 102 43.1
Manes.01G134100 Manihot esculenta HOM05D002420 ORTHO05D002422 2.8e-16 89.4 117 41.9
Manes.18G080566 Manihot esculenta HOM05D002420 ORTHO05D002422 2.8e-16 89.4 102 42.2
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.7e-16 89.0 102 41.2
Sabra07G0023800 Salix brachista HOM05D002420 ORTHO05D002422 3.7e-16 89.0 113 41.6
Atru.chr3.562 Acer truncatum HOM05D002420 ORTHO05D002422 4.8e-16 88.6 105 39.0
Gorai.007G204200 Gossypium raimondii HOM05D002420 ORTHO05D002422 6.2e-16 88.2 102 43.1
HanXRQChr02g0054011 Helianthus annuus HOM05D002420 ORTHO05D002422 6.2e-16 88.2 102 43.1
Eucgr.I02456 Eucalyptus grandis HOM05D002420 ORTHO05D002422 8.2e-16 87.8 98 45.9
AUR62003167 Chenopodium quinoa HOM05D002420 ORTHO05D002422 1.1e-15 87.4 102 40.2
Gohir.A11G185100 Gossypium hirsutum HOM05D002420 ORTHO05D002422 1.1e-15 87.4 102 43.1
TAR628G0483 Trochodendron aralioides HOM05D002420 ORTHO05D002422 1.1e-15 87.4 102 41.2
unitig_899.g14987 Utricularia gibba HOM05D002420 ORTHO05D002422 1.1e-15 87.4 101 43.6
ClCG07G009080 Citrullus lanatus HOM05D002420 ORTHO05D002422 1.8e-15 86.7 103 43.7
PGSC0003DMG400019444 Solanum tuberosum HOM05D002420 ORTHO05D002422 1.8e-15 86.7 102 43.1
FAN28G1267 Fragaria x ananassa HOM05D002420 ORTHO05D002422 2.4e-15 86.3 91 46.2
DCAR_015928 Daucus carota HOM05D002420 ORTHO05D002422 3.1e-15 85.9 102 42.2
TWI09G0807 Tripterygium wilfordii HOM05D002420 ORTHO05D002422 3.1e-15 85.9 117 41.0
Oeu054758.1 Olea europaea HOM05D002420 ORTHO05D002422 4.0e-15 85.5 102 44.1
AUR62003166 Chenopodium quinoa HOM05D002420 ORTHO05D002422 6.9e-15 84.7 120 37.5
Solyc01g097610.3 Solanum lycopersicum HOM05D002420 ORTHO05D002422 6.9e-15 84.7 102 41.2
Sopen01g041240 Solanum pennellii HOM05D002420 ORTHO05D002422 6.9e-15 84.7 102 41.2
EL10Ac6g14933 Beta vulgaris HOM05D002420 ORTHO05D002422 1.2e-14 84.0 102 39.2
Nitab4.5_0001827g0040 Nicotiana tabacum HOM05D002420 ORTHO05D002422 1.2e-14 84.0 102 42.2
Thecc.01G037700 Theobroma cacao HOM05D002420 ORTHO05D002422 1.2e-14 84.0 102 41.2
Gohir.D11G191566 Gossypium hirsutum HOM05D002420 ORTHO05D002422 1.5e-14 83.6 102 41.2
CAN.G134.121 Capsicum annuum HOM05D002420 ORTHO05D002422 3.4e-14 82.4 102 42.2
Oeu007441.1 Olea europaea HOM05D002420 ORTHO05D002422 4.5e-14 82.0 102 39.2
Gohir.D12G065250 Gossypium hirsutum HOM05D002420 ORTHO05D002422 5.8e-14 81.6 102 40.2
Gorai.008G068500 Gossypium raimondii HOM05D002420 ORTHO05D002422 5.8e-14 81.6 102 39.2
Manes.18G080700 Manihot esculenta HOM05D002420 ORTHO05D002422 5.8e-14 81.6 100 41.0
Nitab4.5_0000434g0020 Nicotiana tabacum HOM05D002420 ORTHO05D002422 1.0e-13 80.9 102 41.2
Manes.18G080500 Manihot esculenta HOM05D002420 ORTHO05D002422 1.7e-13 80.1 100 40.0
PGSC0003DMG400014906 Solanum tuberosum HOM05D002420 ORTHO05D002422 2.2e-13 79.7 102 42.2
Hund16586 Selenicereus undatus HOM05D002420 ORTHO05D002422 4.9e-13 78.6 102 38.2
CsaV3_4G005120 Cucumis sativus L. HOM05D002420 ORTHO05D002422 1.1e-12 77.4 108 38.0
Manes.18G080632 Manihot esculenta HOM05D002420 ORTHO05D002422 1.4e-12 77.0 104 41.3
Thecc.02G356700 Theobroma cacao HOM05D002420 ORTHO05D002422 1.4e-12 77.0 102 39.2
PGSC0003DMG400041367 Solanum tuberosum HOM05D002420 ORTHO05D002422 5.5e-12 75.1 41 85.4
Solyc01g097620.2 Solanum lycopersicum HOM05D002420 ORTHO05D002422 1.1e-07 60.8 54 53.7
Ciclev10005096m.g Citrus clementina HOM05D000664 ORTHO05D000491 2.4e-07 59.7 101 34.7
Ciclev10006867m.g Citrus clementina HOM05D000664 ORTHO05D000491 2.6e-06 56.2 101 33.7
CANSAT56G0713 Cannabis sativa HOM05D000664 ORTHO05D000491 4.5e-06 55.5 113 33.6
Duzib068G1024 Durio zibethinus HOM05D000664 ORTHO05D000491 5.9e-06 55.1 94 34.0
Ciclev10005086m.g Citrus clementina HOM05D000664 ORTHO05D000491 7.7e-06 54.7 107 32.7
Gorai.008G214400 Gossypium raimondii HOM05D000664 ORTHO05D000491 7.7e-06 54.7 117 36.8
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.0e-05 54.3 98 34.7
TAR371G0475 Trochodendron aralioides HOM05D002420 ORTHO05D002422 1.0e-05 54.3 99 34.3


User provided reference genes

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