Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 2.3e-235 818.5 413 100.0
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.9e-234 815.5 413 99.8
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 4.1e-229 797.7 413 96.9
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 9.6e-210 733.4 417 89.7
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.7e-198 696.0 420 84.8
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.6e-196 689.5 419 84.2
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 1.3e-195 686.4 423 83.2
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 6.7e-163 577.8 416 72.8
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.1e-160 568.9 417 71.2
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.2e-159 567.0 417 71.0
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.9e-159 564.7 408 72.1
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.2e-156 557.0 415 69.6
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.0e-155 553.9 405 71.4
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.3e-153 547.0 415 69.2
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 8.2e-153 544.3 406 68.5
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.8e-152 543.1 403 70.0
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.4e-152 542.7 413 69.2
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.4e-152 542.7 409 68.9
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.1e-152 542.0 417 68.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 7.0e-152 541.2 405 69.6
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 9.1e-152 540.8 395 70.4
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.2e-151 540.4 404 69.3
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.6e-151 539.3 407 68.8
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.6e-151 539.3 420 67.1
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.3e-150 537.0 418 67.5
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.2e-150 536.2 369 74.3
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.2e-149 532.3 408 68.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 7.2e-149 531.2 411 67.9
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 3.6e-148 528.9 379 71.2
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 8.0e-148 527.7 332 79.8
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.4e-147 526.9 411 67.6
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.1e-146 523.9 418 66.7
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.5e-146 523.5 390 70.8
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 2.6e-146 522.7 414 65.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.7e-146 521.5 406 67.2
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 9.7e-146 520.8 331 79.5
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.2e-145 519.6 396 66.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.1e-144 517.3 416 66.1
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.1e-144 517.3 421 66.0
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.1e-144 517.3 405 67.9
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.1e-144 517.3 401 67.8
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.8e-144 516.5 480 60.0
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.8e-144 516.5 405 67.2
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 4.1e-144 515.4 411 66.2
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 5.3e-144 515.0 409 65.0
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 7.0e-144 514.6 412 66.3
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.2e-143 513.8 408 65.2
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.0e-143 513.1 353 72.2
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 5.9e-143 511.5 402 67.7
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.0e-142 510.8 404 67.1
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.7e-142 510.0 410 65.1
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.2e-142 509.6 418 64.4
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.0e-142 508.4 384 66.7
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 6.5e-142 508.1 404 63.6
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-141 507.3 384 66.4
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.5e-141 506.9 405 65.9
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.5e-141 506.9 398 65.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.9e-141 506.5 372 68.0
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.9e-141 506.5 385 66.8
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 4.2e-141 505.4 369 67.2
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.2e-141 505.4 385 66.5
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 5.5e-141 505.0 410 64.1
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.5e-141 505.0 384 66.1
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 9.4e-141 504.2 361 70.1
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 9.4e-141 504.2 419 64.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 2.1e-140 503.1 357 70.9
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 2.1e-140 503.1 357 70.9
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.6e-140 502.3 398 66.3
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 6.1e-140 501.5 357 70.6
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.1e-140 501.5 385 66.2
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.8e-139 500.0 392 66.6
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.3e-139 499.6 407 64.1
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 2.3e-139 499.6 405 64.7
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.3e-139 499.6 360 68.3
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 5.2e-139 498.4 368 69.3
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.8e-139 498.0 404 64.1
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 8.8e-139 497.7 404 64.6
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.2e-138 497.3 406 63.5
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.0e-138 496.5 440 61.1
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-138 496.5 406 63.8
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 2.0e-138 496.5 403 63.3
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.6e-138 496.1 380 66.3
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 3.4e-138 495.7 396 64.6
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 3.4e-138 495.7 396 64.6
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 4.4e-138 495.4 411 63.3
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 5.7e-138 495.0 440 60.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 9.8e-138 494.2 407 63.9
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 9.8e-138 494.2 352 70.7
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.3e-137 493.8 408 61.8
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-137 493.4 415 62.9
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.2e-137 493.0 407 62.9
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.8e-137 491.9 411 63.0
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 8.3e-137 491.1 407 62.7
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 2.4e-136 489.6 414 62.3
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.4e-136 489.6 357 67.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.1e-136 488.8 420 61.2
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 5.4e-136 488.4 407 62.9
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.7e-135 486.1 416 62.5
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 4.5e-135 485.3 408 63.0
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.2e-134 483.0 331 73.1
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.1e-133 480.7 405 62.7
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.5e-133 480.3 357 68.9
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 5.5e-133 478.4 405 62.0
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 9.4e-133 477.6 335 71.3
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.0e-131 474.2 348 69.3
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.5e-130 470.3 332 70.5
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 4.4e-130 468.8 407 62.2
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.3e-126 457.2 387 60.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.7e-121 440.3 304 71.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 6.4e-121 438.3 349 65.0
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.3e-118 429.9 336 66.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.2e-116 421.8 291 73.9
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.8e-115 418.3 359 59.6
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 3.7e-113 412.5 370 58.9
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 3.5e-111 406.0 370 57.8
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-107 392.1 346 56.9
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.2e-106 391.0 366 56.0
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-104 384.4 402 50.2
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 9.2e-104 381.3 414 54.8
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-103 380.9 325 57.8
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.1e-103 380.2 406 56.2
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 5.6e-101 372.1 333 56.2
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 2.4e-96 356.7 432 50.2
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 6.2e-92 342.0 312 52.9
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.4e-88 330.1 282 63.8
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.4e-83 314.3 273 60.8
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 4.9e-73 279.3 333 49.2
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.1e-72 275.4 296 43.6
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.8e-70 270.8 308 45.1
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.1e-69 268.1 309 44.3
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.5e-66 257.7 292 44.9
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.8e-65 253.1 244 56.1
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.9e-65 252.7 200 65.0
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.4e-65 251.9 367 39.2
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.9e-62 243.0 285 42.5
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.5e-61 241.1 181 66.3
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.7e-61 239.2 226 59.7
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.4e-61 238.8 321 38.9
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 9.6e-61 238.4 300 42.0
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.7e-60 236.5 285 41.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.3e-60 235.7 379 34.8
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 6.9e-59 232.3 149 80.5
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 3.2e-56 223.4 198 61.1
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-54 218.4 290 38.3
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-54 218.0 267 40.1
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.9e-49 200.3 153 59.5
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.2e-48 196.8 312 37.8
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.4e-45 186.4 311 35.7
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.4e-45 186.4 359 33.7
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.7e-45 186.0 311 35.4
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.2e-44 184.1 328 32.3
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.7e-44 183.3 192 52.6
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.3e-43 179.5 320 31.9
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.5e-42 176.4 168 61.3
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-41 174.5 317 29.7
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.7e-41 174.5 140 61.4
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.1e-39 167.5 211 42.7
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.0e-33 146.4 325 30.2
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.2e-32 142.5 293 31.4
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 3.3e-29 133.7 119 54.6
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-28 131.7 326 27.9
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 3.5e-26 123.6 77 77.9
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-25 121.7 293 30.4
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-25 121.3 86 60.5
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.7e-25 121.3 298 28.2
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.2e-25 120.9 221 29.9
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.2e-25 120.9 106 64.2
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-24 118.6 326 28.5
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.9e-24 117.9 76 73.7
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-22 109.8 188 33.0
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-21 108.6 320 27.8
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.0e-21 107.8 312 27.9
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-19 101.7 309 27.5
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 3.5e-18 97.1 298 26.2
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.3e-17 95.1 349 24.9
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 6.3e-12 76.3 60 66.7
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.8e-10 69.3 146 30.8
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-06 58.2 90 35.6


User provided reference genes

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