Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 5.4e-99 364.4 190 100.0
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 7.7e-98 360.5 190 98.9
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 9.5e-88 327.0 190 91.1
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.3e-64 248.4 174 79.3
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 5.2e-62 241.5 183 76.5
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.6e-58 229.9 176 73.3
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 4.5e-37 158.7 199 51.8
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.3e-36 157.1 191 51.8
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.2e-34 150.6 194 49.0
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.6e-34 150.2 169 50.9
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 4.6e-34 148.7 188 48.4
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 1.3e-33 147.1 201 44.8
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.8e-33 146.7 169 49.1
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 5.1e-33 145.2 167 49.1
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.1e-33 145.2 209 44.5
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 6.7e-33 144.8 209 44.5
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 8.7e-33 144.4 176 48.9
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 3.3e-32 142.5 175 50.9
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 4.3e-32 142.1 164 50.6
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 1.6e-31 140.2 174 47.7
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 6.3e-31 138.3 192 45.8
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 8.2e-31 137.9 190 45.8
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.8e-30 136.7 166 51.8
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.1e-30 136.0 184 44.0
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 4.1e-30 135.6 181 46.4
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.3e-30 135.2 175 50.9
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 6.9e-30 134.8 185 45.4
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 6.9e-30 134.8 211 43.1
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 9.0e-30 134.4 188 47.9
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 9.0e-30 134.4 170 45.3
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 9.0e-30 134.4 177 48.0
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.2e-29 134.0 172 48.3
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.2e-29 134.0 182 47.3
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.5e-29 133.7 185 45.9
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 4.5e-29 132.1 184 46.2
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 5.9e-29 131.7 181 43.6
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.0e-28 131.0 184 45.7
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.7e-28 130.2 212 41.0
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 3.8e-28 129.0 200 43.0
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.4e-28 127.9 196 42.9
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.1e-27 127.5 194 44.8
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.2e-27 125.9 191 45.5
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.5e-27 125.2 196 41.8
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.2e-27 124.8 192 42.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.2e-27 124.8 196 42.9
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 9.3e-27 124.4 186 44.1
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.2e-26 124.0 172 42.4
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.2e-26 124.0 184 44.0
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.6e-26 123.6 195 43.1
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 2.1e-26 123.2 182 42.9
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 2.7e-26 122.9 161 44.7
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.5e-26 122.5 168 45.2
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 4.6e-26 122.1 196 41.8
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.6e-26 122.1 170 45.3
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.1e-26 121.7 196 41.8
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 6.1e-26 121.7 196 41.3
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 7.9e-26 121.3 161 44.1
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 7.9e-26 121.3 178 43.3
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.3e-25 120.6 186 42.5
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.3e-25 120.6 172 41.3
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 2.3e-25 119.8 175 40.6
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.0e-25 119.4 183 40.4
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 5.1e-25 118.6 172 40.7
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 6.7e-25 118.2 187 43.9
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 8.7e-25 117.9 194 41.2
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 8.7e-25 117.9 168 42.9
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 1.1e-24 117.5 172 40.7
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.5e-24 116.3 179 39.7
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 4.3e-24 115.5 185 42.2
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 4.3e-24 115.5 199 41.7
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 9.7e-24 114.4 167 43.1
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 9.7e-24 114.4 174 44.8
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.3e-23 114.0 198 38.9
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 2.8e-23 112.8 152 45.4
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 3.7e-23 112.5 174 40.8
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 3.7e-23 112.5 171 40.4
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 4.8e-23 112.1 191 40.8
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 6.3e-23 111.7 162 45.1
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 1.1e-22 110.9 176 40.9
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.4e-22 110.5 180 38.3
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.4e-22 110.5 189 43.4
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.4e-22 110.5 173 41.0
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.4e-22 110.5 171 40.4
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 2.4e-22 109.8 186 40.9
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 2.4e-22 109.8 187 42.2
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 3.1e-22 109.4 164 41.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 9.0e-22 107.8 176 40.3
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 9.0e-22 107.8 176 40.3
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.5e-21 107.1 187 38.5
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.0e-20 104.4 182 37.9
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.3e-20 104.0 185 38.9
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 1.7e-20 103.6 190 38.4
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 2.9e-20 102.8 182 38.5
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 6.5e-20 101.7 200 37.5
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 8.5e-20 101.3 175 39.4
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.9e-19 100.1 156 41.0
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 2.5e-19 99.8 179 38.0
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 3.2e-19 99.4 187 40.6
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.2e-19 99.4 144 43.8
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 4.2e-19 99.0 187 38.5
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 5.5e-19 98.6 163 36.8
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.2e-18 97.4 178 35.4
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 1.6e-18 97.1 187 38.5
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.7e-18 96.3 187 38.5
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 6.1e-18 95.1 192 35.9
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.1e-18 95.1 199 38.2
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 7.9e-18 94.7 199 38.2
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 1.8e-17 93.6 181 33.1
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 3.0e-17 92.8 205 35.1
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-16 90.5 202 36.1
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 6.3e-15 85.1 176 35.8
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 8.2e-15 84.7 201 34.3
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 8.2e-15 84.7 193 33.2
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 8.2e-15 84.7 193 33.2
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 4.1e-14 82.4 218 34.4
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.4e-13 79.3 111 43.2
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.9e-13 78.6 97 45.4
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.9e-13 78.6 97 45.4
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 7.7e-13 78.2 167 34.1
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.7e-13 78.2 111 45.0
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 7.7e-13 78.2 154 35.7
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 2.2e-12 76.6 112 45.5
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 2.9e-12 76.3 213 34.3
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 3.2e-11 72.8 64 60.9
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 7.2e-11 71.6 184 32.1
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.4e-11 71.2 146 34.9
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 8.8e-09 64.7 71 50.7
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.8e-09 64.7 120 37.5
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.1e-08 64.3 171 32.2
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.5e-08 63.9 154 33.1
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.2e-07 60.1 118 40.7
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 2.2e-07 60.1 73 47.9
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 1.4e-06 57.4 114 37.7


User provided reference genes

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