Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g047480.2 Solanum lycopersicum HOM05D006553 ORTHO05D008070 1.6e-42 175.6 88 100.0
Solyc10g083350.2 Solanum lycopersicum HOM05D006553 ORTHO05D008070 9.0e-41 169.9 87 96.6
Sopen10g032850 Solanum pennellii HOM05D006553 ORTHO05D008070 2.0e-40 168.7 87 95.4
PGSC0003DMG400028255 Solanum tuberosum HOM05D006553 ORTHO05D008070 2.0e-40 168.7 87 95.4
CAN.G1069.17 Capsicum annuum HOM05D006553 ORTHO05D008070 2.9e-39 164.9 87 93.1
Nitab4.5_0013616g0010 Nicotiana tabacum HOM05D006553 ORTHO05D008070 2.7e-37 158.3 87 89.7
Peaxi162Scf00096g00313 Petunia axillaris HOM05D006553 ORTHO05D008070 3.3e-35 151.4 87 86.2
Lj3A997G43 Lonicera japonica HOM05D006553 ORTHO05D008070 1.8e-33 145.6 87 81.6
GSVIVG01033848001 Vitis vinifera HOM05D006553 ORTHO05D008070 3.1e-33 144.8 87 80.5
QL07p038710 Quercus lobata HOM05D006553 ORTHO05D008070 6.9e-33 143.7 87 78.2
QL07p038960 Quercus lobata HOM05D006553 ORTHO05D008070 6.9e-33 143.7 87 78.2
Thecc.05G089700 Theobroma cacao HOM05D006553 ORTHO05D008070 3.4e-32 141.4 87 79.3
Ciclev10012335m.g Citrus clementina HOM05D006553 ORTHO05D008070 4.5e-32 141.0 87 78.2
Phvul.001G190400 Phaseolus vulgaris HOM05D006553 ORTHO05D008070 4.5e-32 141.0 87 74.7
Glyma.19G194936 Glycine max HOM05D006553 ORTHO05D008070 5.8e-32 140.6 87 75.9
VMungo1383G0588 Vigna mungo HOM05D006553 ORTHO05D008070 5.8e-32 140.6 87 77.0
Hma1.2p1_0232F.1_g097970 Hydrangea macrophylla HOM05D006553 ORTHO05D008070 7.6e-32 140.2 87 78.2
MBI17_g08341_MAGBIO Magnolia biondii HOM05D006553 ORTHO05D008070 9.9e-32 139.8 87 77.0
Aqoxy2G01179 Aquilegia oxysepala HOM05D006553 ORTHO05D008070 1.3e-31 139.4 87 77.0
Nn2g14162 Nelumbo nucifera HOM05D006553 ORTHO05D008070 1.3e-31 139.4 87 77.0
Gohir.D04G099500 Gossypium hirsutum HOM05D006553 ORTHO05D008070 1.7e-31 139.0 87 79.3
TWI77G0457 Tripterygium wilfordii HOM05D006553 ORTHO05D008070 1.7e-31 139.0 87 79.3
MSTRG.10367 Avicennia marina HOM05D006553 ORTHO05D008070 2.9e-31 138.3 87 75.9
BcaNung06241 Brassica carinata HOM05D006553 ORTHO05D008070 2.9e-31 138.3 87 75.9
BolC5t34455H Brassica oleracea HOM05D006553 ORTHO05D008070 2.9e-31 138.3 87 75.9
Migut.L01780 Erythranthe guttata HOM05D006553 ORTHO05D008070 2.9e-31 138.3 87 75.9
PGR004G2635 Punica granatum HOM05D006553 ORTHO05D008070 2.9e-31 138.3 87 75.9
BcaNung05910 Brassica carinata HOM05D006553 ORTHO05D008070 3.8e-31 137.9 87 75.9
CARHR084610 Cardamine hirsuta HOM05D006553 ORTHO05D008070 3.8e-31 137.9 87 75.9
FvH4_6g18800 Fragaria vesca HOM05D006553 ORTHO05D008070 3.8e-31 137.9 87 75.9
FAN02G1927 Fragaria x ananassa HOM05D006553 ORTHO05D008070 3.8e-31 137.9 87 75.9
RcHm_v2.0_Chr3g0473811 Rosa chinensis HOM05D006553 ORTHO05D008070 3.8e-31 137.9 87 75.9
vmacro08867 Vaccinium macrocarpon HOM05D006553 ORTHO05D008070 3.8e-31 137.9 87 77.0
Atru.chr8.1531 Acer truncatum HOM05D006553 ORTHO05D008070 4.9e-31 137.5 87 77.0
arahy.Tifrunner.gnm1.ann1.8A6FDN Arachis hypogaea HOM05D006553 ORTHO05D008070 4.9e-31 137.5 87 74.7
Rhsim04G0131900 Rhododendron simsii HOM05D006553 ORTHO05D008070 4.9e-31 137.5 87 75.9
arahy.Tifrunner.gnm1.ann1.J3GQ4Y Arachis hypogaea HOM05D006553 ORTHO05D008070 6.4e-31 137.1 87 74.7
BraA05t22687Z Brassica rapa HOM05D006553 ORTHO05D008070 6.4e-31 137.1 87 75.9
Lj1g0017162 Lotus japonicus HOM05D006553 ORTHO05D008070 6.4e-31 137.1 87 73.6
Medtr7g104650 Medicago truncatula HOM05D006553 ORTHO05D008070 6.4e-31 137.1 87 73.6
Cc06_g05810 Coffea canephora HOM05D006553 ORTHO05D008070 8.4e-31 136.7 87 75.9
HanXRQChr05g0133131 Helianthus annuus HOM05D006553 ORTHO05D008070 1.1e-30 136.3 87 74.7
Hund19930 Selenicereus undatus HOM05D006553 ORTHO05D008070 1.1e-30 136.3 87 77.0
CSS0014047 Camellia sinensis var. sinensis HOM05D006553 ORTHO05D008070 1.9e-30 135.6 87 77.0
Carub.0008s0494 Capsella rubella HOM05D006553 ORTHO05D008070 1.9e-30 135.6 87 74.7
Cpa.g.sc5.16 Carica papaya HOM05D006553 ORTHO05D008070 1.9e-30 135.6 87 75.9
MD12G1036600 Malus domestica HOM05D006553 ORTHO05D008070 1.9e-30 135.6 87 74.7
SalBow5G0069 Salvia bowleyana HOM05D006553 ORTHO05D008070 1.9e-30 135.6 87 77.0
Sed0026247 Sechium edule HOM05D006553 ORTHO05D008070 1.9e-30 135.6 87 77.0
Aa31LG3G2660 Aethionema arabicum HOM05D006553 ORTHO05D008070 2.5e-30 135.2 87 72.4
CiPaw.09G014600 Carya illinoinensis HOM05D006553 ORTHO05D008070 2.5e-30 135.2 87 72.4
Dinv21203 Davidia involucrata HOM05D006553 ORTHO05D008070 2.5e-30 135.2 87 74.7
ClCG10G018950 Citrullus lanatus HOM05D006553 ORTHO05D008070 3.2e-30 134.8 87 75.9
FAN05G5318 Fragaria x ananassa HOM05D006553 ORTHO05D008070 3.2e-30 134.8 87 74.7
Cfa016612 Carpinus fangiana HOM05D006553 ORTHO05D008070 4.2e-30 134.4 87 74.7
TPR.G19533 Trifolium pratense HOM05D006553 ORTHO05D008070 4.2e-30 134.4 87 73.6
Ca_09008_v3 Cicer arietinum L. HOM05D006553 ORTHO05D008070 5.5e-30 134.0 87 72.4
Lalb_Chr01g0018141 Lupinus albus HOM05D006553 ORTHO05D008070 5.5e-30 134.0 87 73.6
Gohir.A04G062500 Gossypium hirsutum HOM05D006553 ORTHO05D008070 7.1e-30 133.7 91 75.8
Sp3g08410 Schrenkiella parvula HOM05D006553 ORTHO05D008070 7.1e-30 133.7 87 70.1
Thhalv10021175m.g Eutrema salsugineum HOM05D006553 ORTHO05D008070 9.3e-30 133.3 87 74.7
Lsat_1_v5_gn_8_77160 Lactuca sativa HOM05D006553 ORTHO05D008070 9.3e-30 133.3 87 73.6
AT3G10130 Arabidopsis thaliana HOM05D006553 ORTHO05D008070 1.2e-29 132.9 87 73.6
EL10Ac7g16914 Beta vulgaris HOM05D006553 ORTHO05D008070 1.2e-29 132.9 87 74.7
CANSAT64G1380 Cannabis sativa HOM05D006553 ORTHO05D008070 1.2e-29 132.9 87 73.6
MELO3C009475.2 Cucumis melo HOM05D006553 ORTHO05D008070 1.2e-29 132.9 87 72.4
Os02g0533200 Oryza sativa ssp. japonica HOM05D006553 ORTHO05D008070 1.2e-29 132.9 87 72.4
CsaV3_3G037300 Cucumis sativus L. HOM05D006553 ORTHO05D008070 1.6e-29 132.5 87 73.6
ECA236G1922 Erigeron canadensis HOM05D006553 ORTHO05D008070 1.6e-29 132.5 87 72.4
FAN05G5513 Fragaria x ananassa HOM05D006553 ORTHO05D008070 1.6e-29 132.5 87 73.6
PSO384G2101 Papaver somniferum HOM05D006553 ORTHO05D008070 2.7e-29 131.7 87 72.4
Actinidia31271 Actinidia chinensis HOM05D006553 ORTHO05D008070 3.5e-29 131.3 87 74.7
Gorai.009G402400 Gossypium raimondii HOM05D006553 ORTHO05D008070 3.5e-29 131.3 91 75.8
Potri.016G098500 Populus trichocarpa HOM05D006553 ORTHO05D008070 3.5e-29 131.3 87 72.4
Ah.08g210560 Amaranthus hybridus HOM05D006553 ORTHO05D008070 4.6e-29 131.0 87 71.3
Haze_19616 Corylus avellana HOM05D006553 ORTHO05D008070 4.6e-29 131.0 87 72.4
Eucgr.A02662 Eucalyptus grandis HOM05D006553 ORTHO05D008070 6.0e-29 130.6 87 72.4
TAR636G1909 Trochodendron aralioides HOM05D006553 ORTHO05D008070 6.0e-29 130.6 87 73.6
DCAR_013388 Daucus carota HOM05D006553 ORTHO05D008070 7.9e-29 130.2 87 74.7
HPP92_006351 Vanilla planifolia HOM05D006553 ORTHO05D008070 1.0e-28 129.8 87 72.4
SGA_v2.0_scaffold35G14069 Striga asiatica HOM05D006553 ORTHO05D008070 1.3e-28 129.4 87 71.3
COL.COLO4_29728 Corchorus olitorius HOM05D006553 ORTHO05D008070 1.8e-28 129.0 103 65.0
CDE07G1033 Ceratophyllum demersum HOM05D006553 ORTHO05D008070 2.3e-28 128.6 87 70.1
Manes.08G025600 Manihot esculenta HOM05D006553 ORTHO05D008070 2.3e-28 128.6 87 70.1
Sabra16G0099500 Salix brachista HOM05D006553 ORTHO05D008070 2.3e-28 128.6 87 72.4
PSO339G0456 Papaver somniferum HOM05D006553 ORTHO05D008070 3.0e-28 128.3 87 71.3
THA.LOC104816396 Tarenaya hassleriana HOM05D006553 ORTHO05D008070 1.5e-27 125.9 87 70.1
ATR0776G018 Amborella trichopoda HOM05D006553 ORTHO05D008070 1.9e-27 125.6 87 69.0
Zm00001eb242810 Zea mays HOM05D006553 ORTHO05D008070 2.5e-27 125.2 87 69.0
C05p57990 Brassica napus HOM05D006553 ORTHO05D008070 3.3e-27 124.8 111 59.5
A05p38960 Brassica napus HOM05D006553 ORTHO05D008070 7.4e-27 123.6 111 59.5
Atru.chr8.1529 Acer truncatum HOM05D006553 ORTHO05D008070 6.2e-26 120.6 87 71.3
SEGI_29247 Sequoiadendron giganteum HOM05D006553 ORTHO05D008070 1.2e-24 116.3 87 60.9
unitig_8.g4964 Utricularia gibba HOM05D006553 ORTHO05D008070 4.5e-24 114.4 77 71.4
Sc20g0006300 Simmondsia chinensis HOM05D006553 ORTHO05D008070 3.8e-23 111.3 74 75.7
Pp3c23_15420 Physcomitrium patens HOM05D006553 ORTHO05D008070 1.9e-22 109.0 87 60.9
Nitab4.5_0009023g0010 Nicotiana tabacum HOM05D006553 ORTHO05D008070 7.9e-21 103.6 87 63.2
Mapoly0131s0003 Marchantia polymorpha HOM05D006553 ORTHO05D008070 3.3e-19 98.2 88 53.4
Solyc01g056880.3 Solanum lycopersicum HOM05D006553 ORTHO05D008070 3.7e-18 94.7 87 60.9
SEGI_38541 Sequoiadendron giganteum HOM05D006553 ORTHO05D008070 1.4e-17 92.8 82 53.7
CBR_g26276 Chara braunii HOM05D006553 ORTHO05D008070 2.2e-15 85.5 90 45.6
Psat0s2641g0160 Pisum sativum HOM05D000004 ORTHO05D000002 1.0e-12 76.6 49 65.3
SEGI_03140 Sequoiadendron giganteum HOM05D001552 ORTHO05D006640 1.3e-10 69.7 88 43.2
AagrBONN_evm.TU.Sc2ySwM_117.527 Anthoceros agrestis HOM05D001552 ORTHO05D006640 1.4e-09 66.2 88 38.6
unitig_8.g3235 Utricularia gibba HOM05D001552 ORTHO05D006640 4.1e-09 64.7 89 42.7
Ah.05g170730 Amaranthus hybridus HOM05D001552 ORTHO05D006640 6.9e-09 63.9 89 41.6
ClCG10G021690 Citrullus lanatus HOM05D001552 ORTHO05D006640 6.9e-09 63.9 89 41.6
Os01g0850900 Oryza sativa ssp. japonica HOM05D001552 ORTHO05D006640 9.1e-09 63.5 89 43.8
Psat0s2641g0200 Pisum sativum HOM05D003122 ORTHO05D008070 9.1e-09 63.5 37 86.5
EL10Ac1g01073 Beta vulgaris HOM05D001552 ORTHO05D006640 1.2e-08 63.2 93 43.0
AUR62019028 Chenopodium quinoa HOM05D001552 ORTHO05D006640 1.2e-08 63.2 89 41.6
Glyma.03G196100 Glycine max HOM05D006553 ORTHO05D008070 1.2e-08 63.2 39 76.9
Hma1.2p1_0232F.1_g097960 Hydrangea macrophylla HOM05D006553 ORTHO05D008070 1.2e-08 63.2 38 78.9
Sed0010206 Sechium edule HOM05D001552 ORTHO05D006640 1.2e-08 63.2 89 43.8
MSTRG.19038 Avicennia marina HOM05D001552 ORTHO05D006640 1.5e-08 62.8 89 41.6
CsaV3_3G034280 Cucumis sativus L. HOM05D001552 ORTHO05D006640 1.5e-08 62.8 89 40.4
TAR636G2148 Trochodendron aralioides HOM05D001552 ORTHO05D006640 1.5e-08 62.8 89 42.7
MELO3C009202.2 Cucumis melo HOM05D001552 ORTHO05D006640 2.0e-08 62.4 89 40.4
MCO11G497 Micromonas commoda HOM05D001552 ORTHO05D006640 2.0e-08 62.4 90 41.1
Zm00001eb034360 Zea mays HOM05D006553 ORTHO05D008070 2.0e-08 62.4 38 78.9
CAN.G502.3 Capsicum annuum HOM05D001552 ORTHO05D006640 2.6e-08 62.0 89 41.6
Atru.chr12.1331 Acer truncatum HOM05D006553 ORTHO05D008070 3.4e-08 61.6 83 44.6
TAR636G3539 Trochodendron aralioides HOM05D001552 ORTHO05D006640 3.4e-08 61.6 89 42.7
Nn2g13573 Nelumbo nucifera HOM05D001552 ORTHO05D006640 4.5e-08 61.2 89 39.3
SGA_v2.0_scaffold85G26786 Striga asiatica HOM05D001552 ORTHO05D006640 4.5e-08 61.2 89 39.3
CBR_g49661 Chara braunii HOM05D001552 ORTHO05D006640 5.9e-08 60.8 91 41.8
AUR62027865 Chenopodium quinoa HOM05D001552 ORTHO05D006640 5.9e-08 60.8 89 40.4
Zm00001eb367650 Zea mays HOM05D001552 ORTHO05D006640 5.9e-08 60.8 93 38.7
Phvul.010G006500 Phaseolus vulgaris HOM05D001552 ORTHO05D006640 7.7e-08 60.5 89 39.3
DCAR_029780 Daucus carota HOM05D002603 ORTHO05D002907 1.7e-07 59.3 38 76.3
MD04G1144100 Malus domestica HOM05D001552 ORTHO05D006640 1.7e-07 59.3 89 37.1
Ca_20105_v3 Cicer arietinum L. HOM05D001552 ORTHO05D006640 2.2e-07 58.9 89 37.1
VMungo0331G1215 Vigna mungo HOM05D001552 ORTHO05D006640 2.2e-07 58.9 89 36.0
AUR62028519 Chenopodium quinoa HOM05D006553 ORTHO05D008070 2.9e-07 58.5 37 70.3
Lalb_Chr12g0206741 Lupinus albus HOM05D001552 ORTHO05D006640 2.9e-07 58.5 89 36.0
MBI05_g36623_MAGBIO Magnolia biondii HOM05D001552 ORTHO05D006640 2.9e-07 58.5 89 34.8
Nitab4.5_0000652g0130 Nicotiana tabacum HOM05D001552 ORTHO05D006640 2.9e-07 58.5 89 37.1
THA.LOC109116897 Tarenaya hassleriana HOM05D001552 ORTHO05D006640 2.9e-07 58.5 89 39.3
Nitab4.5_0004868g0020 Nicotiana tabacum HOM05D001552 ORTHO05D006640 3.8e-07 58.2 89 36.0
Aa31sc250G20 Aethionema arabicum HOM05D001552 ORTHO05D006640 5.0e-07 57.8 89 39.3
Zm00001eb215700 Zea mays HOM05D006553 ORTHO05D008070 5.0e-07 57.8 38 73.7
Manes.09G100772 Manihot esculenta HOM05D001552 ORTHO05D006640 6.5e-07 57.4 89 37.1
Zm00001eb215690 Zea mays HOM05D006553 ORTHO05D008070 6.5e-07 57.4 38 73.7
Sabra16G0106100 Salix brachista HOM05D001552 ORTHO05D006640 8.5e-07 57.0 89 36.0
Lj3g0019847 Lotus japonicus HOM05D001552 ORTHO05D006640 1.4e-06 56.2 89 37.1
Dinv35523 Davidia involucrata HOM05D001552 ORTHO05D006640 1.9e-06 55.8 89 36.0
Prupe.6G268400 Prunus persica HOM05D001552 ORTHO05D006640 1.9e-06 55.8 89 36.0
Cpa.g.sc56.92 Carica papaya HOM05D001552 ORTHO05D006640 3.2e-06 55.1 89 33.7
Peaxi162Scf00009g00245 Petunia axillaris HOM05D001552 ORTHO05D006640 3.2e-06 55.1 93 36.6
PGR031G3644 Punica granatum HOM05D001552 ORTHO05D006640 4.2e-06 54.7 90 36.7
QL07p036368 Quercus lobata HOM05D001552 ORTHO05D006640 5.5e-06 54.3 89 34.8
Solyc10g085040.1 Solanum lycopersicum HOM05D001552 ORTHO05D006640 5.5e-06 54.3 89 36.0
PGSC0003DMG400041963 Solanum tuberosum HOM05D001552 ORTHO05D006640 5.5e-06 54.3 89 36.0
Mapoly0056s0063 Marchantia polymorpha HOM05D001552 ORTHO05D006640 7.2e-06 53.9 88 34.1
FvH4_6g12281 Fragaria vesca HOM05D001552 ORTHO05D006640 9.4e-06 53.5 89 34.8
PRCOL_00005845 Prasinoderma coloniale HOM05D001552 ORTHO05D006640 9.4e-06 53.5 94 37.2


User provided reference genes

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