Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 0.0e+00 1407.9 739 100.0
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 0.0e+00 1272.7 690 98.0
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 0.0e+00 1150.6 692 88.3
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 2.5e-309 1065.1 690 80.6
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 2.2e-305 1052.0 691 80.3
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.2e-298 1029.6 690 78.0
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 8.0e-292 1006.9 690 77.5
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 2.8e-289 998.4 647 80.8
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.8e-288 995.7 690 77.2
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 7.8e-287 990.3 692 74.0
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 5.2e-283 977.6 692 74.6
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 1.2e-282 976.5 672 79.0
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 3.4e-282 974.9 692 74.4
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.8e-282 974.2 692 74.0
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 6.4e-281 970.7 693 72.6
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 9.5e-277 956.8 693 73.4
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 9.5e-277 956.8 706 70.8
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 6.8e-275 950.7 687 71.8
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 8.9e-275 950.3 692 71.2
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 3.2e-272 941.8 710 68.9
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 3.0e-270 935.3 689 70.7
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 1.1e-269 933.3 693 70.3
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 9.5e-269 930.2 690 69.7
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 6.2e-268 927.5 689 69.2
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.1e-267 926.8 693 70.0
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.3e-267 925.6 690 69.4
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 2.0e-266 922.5 687 69.1
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.8e-266 921.0 699 68.7
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.3e-265 919.8 690 69.6
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.2e-265 919.1 690 69.3
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 2.2e-265 919.1 711 67.7
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 2.4e-264 915.6 693 69.8
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 2.4e-264 915.6 702 68.9
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 1.6e-263 912.9 692 68.8
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 2.1e-263 912.5 800 62.5
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 6.0e-263 911.0 689 68.9
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 7.8e-263 910.6 690 69.0
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 1.9e-261 906.0 692 67.8
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 3.3e-261 905.2 688 68.8
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 9.5e-261 903.7 687 68.9
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.8e-260 902.1 646 73.4
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 3.6e-260 901.7 687 68.3
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 3.6e-260 901.7 717 66.4
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.7e-260 901.4 658 75.2
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.1e-259 900.2 690 67.8
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 4.0e-259 898.3 693 68.8
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 6.8e-259 897.5 689 67.8
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 6.8e-259 897.5 689 67.6
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 6.8e-259 897.5 694 68.9
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.5e-258 896.3 689 68.2
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 2.6e-258 895.6 694 67.9
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 3.4e-258 895.2 712 66.7
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 1.7e-257 892.9 691 69.0
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 2.2e-257 892.5 701 66.5
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 6.4e-257 891.0 685 69.2
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 8.4e-257 890.6 688 67.3
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.1e-256 890.2 686 66.9
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.9e-256 889.4 694 66.4
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 3.2e-256 888.6 703 67.1
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 6.0e-255 884.4 732 64.8
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.3e-254 883.2 644 70.2
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 8.7e-254 880.6 686 67.3
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.5e-253 879.8 713 66.8
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 1.5e-253 879.8 675 68.7
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 2.5e-253 879.0 686 66.2
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.8e-252 875.5 706 67.4
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 2.8e-252 875.5 706 66.1
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 6.2e-252 874.4 804 60.3
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 3.4e-250 868.6 689 67.1
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 3.4e-250 868.6 694 67.0
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.2e-249 865.9 711 65.0
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 6.4e-249 864.4 691 66.7
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 6.4e-249 864.4 693 66.1
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 4.2e-248 861.7 711 64.7
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.7e-247 859.0 739 64.1
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 4.6e-247 858.2 695 64.7
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 4.6e-247 858.2 699 67.0
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 5.1e-246 854.7 693 65.9
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 8.7e-246 854.0 687 65.4
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.1e-245 853.6 682 66.1
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 2.5e-245 852.4 693 65.1
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 8.1e-244 847.4 694 65.0
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 1.7e-241 839.7 687 65.1
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 1.4e-240 836.6 682 65.0
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.3e-238 829.3 686 63.3
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 6.7e-238 827.8 684 64.5
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 8.7e-238 827.4 651 68.0
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 2.1e-236 822.8 695 63.6
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 4.8e-236 821.6 677 63.8
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.4e-235 820.1 663 65.5
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.6e-234 815.8 690 62.3
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.3e-233 813.5 695 63.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.7e-233 813.1 646 65.8
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 6.5e-233 811.2 686 62.1
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 8.4e-233 810.8 613 69.8
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 7.1e-232 807.7 694 64.1
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 2.7e-231 805.8 686 61.8
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 7.9e-231 804.3 742 58.6
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 3.0e-230 802.4 699 60.5
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 3.0e-230 802.4 686 62.1
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 3.9e-230 802.0 643 66.7
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 6.7e-230 801.2 685 62.3
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 8.7e-230 800.8 686 61.2
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 5.7e-229 798.1 688 61.0
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 5.7e-229 798.1 686 62.1
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 2.1e-228 796.2 686 61.1
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 4.8e-228 795.0 708 59.9
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.5e-226 790.0 643 63.1
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.4e-224 783.5 716 59.2
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 9.3e-224 780.8 645 64.2
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 3.5e-223 778.9 686 60.2
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 4.6e-223 778.5 686 60.2
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 7.9e-223 777.7 714 59.2
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 3.0e-222 775.8 691 59.5
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 1.1e-221 773.9 712 60.4
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.9e-221 773.1 686 61.5
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 1.1e-219 767.3 626 65.5
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 2.6e-218 762.7 686 59.2
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 5.5e-216 755.0 685 58.7
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 5.5e-216 755.0 692 57.8
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.1e-215 753.1 684 58.3
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 7.9e-215 751.1 703 58.5
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 5.1e-214 748.4 615 64.4
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.2e-212 743.0 687 59.5
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 2.9e-209 732.6 648 59.3
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 8.5e-209 731.1 688 59.6
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 7.2e-208 728.0 648 58.6
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.6e-207 726.9 647 58.7
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 1.6e-207 726.9 653 59.6
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.4e-206 723.8 695 55.8
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 3.3e-205 719.2 654 58.9
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.0e-202 709.9 502 76.1
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 5.0e-201 705.3 656 57.9
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 2.1e-199 699.9 663 57.2
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 2.1e-199 699.9 663 57.2
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 3.0e-190 669.5 727 52.5
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 1.3e-180 637.5 737 50.3
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 9.5e-176 621.3 696 52.3
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 5.6e-168 595.5 537 57.9
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 8.3e-164 581.6 550 57.8
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 1.1e-147 528.1 694 45.7
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.5e-146 523.1 563 54.2
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.8e-132 476.5 432 59.7
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 6.2e-127 459.1 356 69.1
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.1e-114 417.5 321 69.2
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.4e-110 404.8 361 57.6
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 5.1e-105 386.3 379 58.8
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 6.5e-100 369.4 459 48.6
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 3.0e-97 360.5 307 59.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.9e-93 346.3 321 61.1
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 1.1e-88 332.0 302 57.9
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 2.8e-87 327.4 607 38.1
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.6e-82 311.6 418 45.2
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 5.9e-69 266.5 634 33.1
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 8.5e-68 262.7 309 51.5
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 2.0e-64 251.5 384 43.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.0e-56 224.9 156 76.9
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.2e-55 221.5 263 51.3
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 8.3e-55 219.5 299 45.5
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.9e-47 194.5 187 56.1
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 6.4e-47 193.4 656 27.4
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.0e-44 186.0 223 51.1
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 9.2e-38 162.9 118 66.9
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 1.1e-35 156.0 193 47.7
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.2e-34 152.5 192 47.4
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.1e-34 151.8 162 54.3
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.8e-33 148.7 135 57.8
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.7e-31 142.1 194 45.9
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 2.3e-28 131.7 90 74.4
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.0e-28 131.3 88 70.5
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 5.6e-27 127.1 79 79.7
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-26 125.6 80 77.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.0e-24 118.6 140 49.3
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 6.2e-18 97.1 299 29.8
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 1.1e-17 96.3 107 50.5
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.8e-17 95.5 162 38.3
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 2.6e-16 91.7 61 78.7
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 3.8e-15 87.8 115 40.9
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 6.4e-15 87.0 86 55.8
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 6.0e-13 80.5 177 33.9
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.6e-11 73.9 118 40.7
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.4e-09 69.3 49 67.3


User provided reference genes

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