Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 7.2e-33 143.3 70 100.0
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.7e-24 114.0 66 86.4
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 4.7e-24 114.0 66 86.4
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 4.7e-24 114.0 66 86.4
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 1.8e-23 112.1 66 84.8
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 2.3e-23 111.7 66 84.8
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 2.3e-23 111.7 66 84.8
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 2.3e-23 111.7 66 84.8
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 5.1e-23 110.5 66 83.3
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 3.3e-22 107.8 66 80.3
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 5.7e-22 107.1 66 81.8
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 5.7e-22 107.1 66 80.3
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 7.4e-22 106.7 66 81.8
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 1.4e-20 102.4 66 72.7
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.4e-20 102.4 66 72.7
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.4e-20 102.4 66 72.7
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.4e-20 102.4 66 72.7
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.8e-20 102.1 66 72.7
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 5.3e-20 100.5 66 71.2
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 5.3e-20 100.5 66 71.2
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 6.9e-20 100.1 64 76.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.5e-19 99.0 66 72.7
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 1.5e-19 99.0 66 71.2
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 2.0e-19 98.6 66 69.7
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 2.0e-19 98.6 66 69.7
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 2.6e-19 98.2 66 69.7
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 2.6e-19 98.2 66 69.7
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 3.4e-19 97.8 66 71.2
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 4.5e-19 97.4 66 66.7
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 7.7e-19 96.7 66 68.2
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 7.7e-19 96.7 66 68.2
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 7.7e-19 96.7 66 69.7
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 1.3e-18 95.9 66 66.7
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 1.3e-18 95.9 66 72.7
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 1.7e-18 95.5 66 68.2
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 2.9e-18 94.7 66 65.2
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 3.8e-18 94.4 66 66.7
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 6.5e-18 93.6 66 66.7
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 6.5e-18 93.6 66 66.7
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.1e-17 92.8 66 69.7
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 1.4e-17 92.4 66 69.7
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 1.4e-17 92.4 66 69.7
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.4e-17 92.4 66 65.2
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.4e-17 92.4 66 65.2
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 1.4e-17 92.4 66 63.6
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 1.4e-17 92.4 66 66.7
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 1.4e-17 92.4 66 65.2
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 1.4e-17 92.4 66 69.7
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 1.4e-17 92.4 66 65.2
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.9e-17 92.0 66 68.2
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.9e-17 92.0 66 68.2
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 1.9e-17 92.0 66 68.2
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 1.9e-17 92.0 66 63.6
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 2.5e-17 91.7 66 68.2
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 2.5e-17 91.7 66 68.2
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 2.5e-17 91.7 66 68.2
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 2.5e-17 91.7 66 63.6
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 2.5e-17 91.7 66 62.1
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 2.5e-17 91.7 66 65.2
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 2.5e-17 91.7 66 65.2
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 3.2e-17 91.3 53 86.8
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 5.5e-17 90.5 66 68.2
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 5.5e-17 90.5 66 68.2
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 5.5e-17 90.5 66 68.2
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 1.6e-16 89.0 66 63.6
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 2.1e-16 88.6 66 66.7
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.1e-16 88.6 59 78.0
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.1e-16 88.6 66 69.7
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 2.7e-16 88.2 66 63.6
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 2.7e-16 88.2 66 65.2
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 3.6e-16 87.8 66 62.1
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 8.0e-16 86.7 66 63.6
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.0e-15 86.3 66 66.7
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 1.0e-15 86.3 66 63.6
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 1.4e-15 85.9 55 76.4
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 8.8e-15 83.2 66 63.6
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 1.3e-13 79.3 54 68.5
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 6.3e-13 77.0 54 72.2
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 3.1e-12 74.7 54 70.4
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 9.1e-12 73.2 53 64.2
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 43 74.4
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 5.9e-11 70.5 48 68.8
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-11 70.5 48 68.8
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 1.0e-10 69.7 48 66.7
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-10 69.3 43 74.4
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-10 69.3 48 66.7
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 2.2e-10 68.6 48 66.7
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 2.9e-10 68.2 42 73.8
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 2.9e-10 68.2 43 72.1
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 3.8e-10 67.8 48 66.7
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 3.8e-10 67.8 48 66.7
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 8.5e-10 66.6 48 66.7
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 8.5e-10 66.6 43 69.8
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.5e-09 65.9 54 61.1
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 1.9e-09 65.5 48 62.5
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 1.9e-09 65.5 48 62.5
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 1.9e-09 65.5 48 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 2.5e-09 65.1 47 61.7
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.5e-09 65.1 61 59.0
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.5e-09 65.1 54 66.7
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 2.5e-09 65.1 66 54.5
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 2.5e-09 65.1 47 68.1
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 5.5e-09 63.9 48 62.5
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 5.5e-09 63.9 42 66.7
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 9.4e-09 63.2 47 59.6
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 9.4e-09 63.2 48 64.6
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 2.7e-08 61.6 48 64.6
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 2.7e-08 61.6 48 64.6
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 8.0e-08 60.1 40 67.5
Peaxi162Scf00406g00134 Petunia axillaris HOM05D001223 ORTHO05D001058 1.0e-07 59.7 34 82.4
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 2.3e-07 58.5 47 53.2
SHI40550 Sapria himalayana HOM05D000540 ORTHO05D008105 4.0e-07 57.8 41 63.4
ClCG03G011250 Citrullus lanatus HOM05D000540 ORTHO05D000001 6.7e-07 57.0 35 82.9
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 6.7e-07 57.0 46 58.7
SHI54100 Sapria himalayana HOM05D000540 ORTHO05D008105 8.8e-07 56.6 41 63.4
SHI40537 Sapria himalayana HOM05D000540 ORTHO05D008105 2.0e-06 55.5 36 66.7
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 2.0e-06 55.5 43 60.5
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 2.6e-06 55.1 43 62.8
SHI36893 Sapria himalayana HOM05D000540 ORTHO05D008105 2.6e-06 55.1 36 66.7
SHI37890 Sapria himalayana HOM05D000540 ORTHO05D008105 3.3e-06 54.7 48 56.2
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 4.4e-06 54.3 55 49.1
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 4.4e-06 54.3 55 49.1
SHI37207 Sapria himalayana HOM05D000540 ORTHO05D008105 4.4e-06 54.3 36 63.9


User provided reference genes

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