Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.5e-36 155.6 77 100.0
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.6e-25 119.0 77 80.5
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 1.6e-25 119.0 77 80.5
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.1e-25 118.6 76 80.3
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 2.3e-24 115.2 77 77.9
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 3.0e-24 114.8 77 79.2
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 3.0e-24 114.8 77 79.2
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 3.0e-24 114.8 77 79.2
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 8.7e-24 113.2 77 77.9
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 1.9e-23 112.1 77 77.9
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 1.9e-23 112.1 77 75.3
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 5.7e-23 110.5 75 73.3
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.3e-22 109.4 76 76.3
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 3.8e-19 97.8 74 70.3
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 6.5e-19 97.1 77 64.9
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 4.2e-18 94.4 77 64.9
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 7.2e-18 93.6 77 66.2
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 9.3e-18 93.2 76 61.8
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 2.1e-17 92.0 68 66.2
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 2.1e-17 92.0 68 66.2
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 3.6e-17 91.3 75 62.7
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 3.6e-17 91.3 76 61.8
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 3.6e-17 91.3 75 61.3
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 4.6e-17 90.9 75 61.3
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 4.6e-17 90.9 75 61.3
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 4.6e-17 90.9 75 61.3
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 4.6e-17 90.9 75 61.3
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.1e-17 90.5 75 61.3
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 1.3e-16 89.4 72 59.7
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 2.3e-16 88.6 77 62.3
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 2.3e-16 88.6 78 60.3
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 2.3e-16 88.6 78 60.3
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 3.9e-16 87.8 76 63.2
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 3.9e-16 87.8 77 58.4
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 3.9e-16 87.8 76 60.5
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 3.9e-16 87.8 76 60.5
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 5.1e-16 87.4 59 78.0
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 6.7e-16 87.0 77 59.7
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 6.7e-16 87.0 59 69.5
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 6.7e-16 87.0 78 59.0
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 8.7e-16 86.7 78 59.0
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 1.1e-15 86.3 78 59.0
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 1.5e-15 85.9 59 67.8
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 1.5e-15 85.9 59 67.8
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 1.5e-15 85.9 59 67.8
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 1.5e-15 85.9 78 59.0
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 2.5e-15 85.1 59 67.8
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 2.5e-15 85.1 59 67.8
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 2.5e-15 85.1 59 67.8
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 3.3e-15 84.7 59 67.8
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 3.3e-15 84.7 72 59.7
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 1.3e-14 82.8 62 64.5
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 2.2e-14 82.0 59 71.2
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 2.8e-14 81.6 78 55.1
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 2.8e-14 81.6 78 55.1
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 3.7e-14 81.3 62 61.3
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 4.8e-14 80.9 77 57.1
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 4.8e-14 80.9 76 56.6
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 6.3e-14 80.5 64 64.1
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 6.3e-14 80.5 59 66.1
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 1.1e-13 79.7 77 55.8
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 1.4e-13 79.3 78 56.4
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.8e-13 79.0 76 57.9
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.8e-13 79.0 76 57.9
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 1.8e-13 79.0 76 57.9
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 2.4e-13 78.6 75 57.3
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 4.1e-13 77.8 76 55.3
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 4.1e-13 77.8 78 55.1
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 4.1e-13 77.8 77 55.8
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 4.1e-13 77.8 76 56.6
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 5.3e-13 77.4 69 53.6
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 6.9e-13 77.0 76 55.3
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 6.9e-13 77.0 77 55.8
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 9.1e-13 76.6 76 55.3
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 4.5e-12 74.3 76 55.3
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.4e-10 69.3 57 59.6
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.4e-10 69.3 46 78.3
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 1.0e-08 63.2 76 48.7
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 1.4e-08 62.8 58 55.2
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 1.4e-08 62.8 57 52.6
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 1.1e-07 59.7 68 50.0
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.1e-07 59.7 47 63.8
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 2.6e-07 58.5 63 52.4
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 7.4e-07 57.0 47 55.3
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 7.4e-07 57.0 47 63.8
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 9.7e-07 56.6 53 60.4
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.3e-06 56.2 44 56.8
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.2e-06 55.5 75 48.0
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 6.3e-06 53.9 44 54.5
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 8.2e-06 53.5 61 45.9


User provided reference genes

Program Settings