Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 9.2e-140 500.4 280 100.0
Sopen11g025520 Solanum pennellii HOM05D008774 ORTHO05D010951 4.7e-43 179.1 134 92.5
Sopen11g012500 Solanum pennellii HOM05D000014 ORTHO05D000016 1.8e-42 177.2 134 88.1
Sopen12g016410 Solanum pennellii HOM05D008774 ORTHO05D010951 1.8e-42 177.2 134 88.1
Sopen04g024020 Solanum pennellii HOM05D008774 ORTHO05D010951 5.2e-42 175.6 208 64.9
Sopen04g023960 Solanum pennellii HOM05D008774 ORTHO05D010951 4.4e-41 172.6 134 90.3
Solyc04g051155.1 Solanum lycopersicum HOM05D008774 ORTHO05D000277 2.9e-40 169.9 94 93.6
Sopen02g011400 Solanum pennellii HOM05D008774 ORTHO05D010951 1.2e-38 164.5 94 89.4
Sopen08g015710 Solanum pennellii HOM05D008774 ORTHO05D010951 3.0e-37 159.8 122 92.6
PGSC0003DMG400000959 Solanum tuberosum HOM05D008774 ORTHO05D010951 1.3e-29 134.4 134 71.6
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 3.3e-28 129.8 139 68.3
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 8.1e-27 125.2 75 84.0
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.0e-25 120.6 75 80.0
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.1e-23 114.8 75 77.3
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.2e-22 111.3 75 76.0
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.6e-22 110.9 75 74.7
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.3e-21 107.8 69 79.7
PGSC0003DMG400030305 Solanum tuberosum HOM05D008774 ORTHO05D010951 1.9e-20 104.0 88 61.4
CAN.G97.25 Capsicum annuum HOM05D000034 ORTHO05D000037 2.5e-20 103.6 132 62.1
CAN.G571.5 Capsicum annuum HOM05D008774 ORTHO05D010951 3.3e-20 103.2 195 48.7
PGSC0003DMG400001885 Solanum tuberosum HOM05D008774 ORTHO05D010951 9.6e-20 101.7 88 63.6
Sopen11g016070 Solanum pennellii HOM05D008774 ORTHO05D010951 2.8e-19 100.1 104 86.5
Sopen04g024540 Solanum pennellii HOM05D008774 ORTHO05D010951 8.1e-19 98.6 88 61.4
PGSC0003DMG400027866 Solanum tuberosum HOM05D008774 ORTHO05D010951 8.1e-19 98.6 88 58.0
Solyc10g017753.1 Solanum lycopersicum HOM05D008774 ORTHO05D000277 1.4e-18 97.8 88 58.0
Sopen03g020690 Solanum pennellii HOM05D000004 ORTHO05D010951 4.0e-18 96.3 88 59.1
Sopen12g008280 Solanum pennellii HOM05D008774 ORTHO05D010951 4.0e-18 96.3 88 59.1
Solyc06g075675.1 Solanum lycopersicum HOM05D008774 ORTHO05D000277 2.0e-17 94.0 68 64.7
Sopen01g043080 Solanum pennellii HOM05D008774 ORTHO05D010951 2.0e-17 94.0 68 64.7
Sopen02g014140 Solanum pennellii HOM05D000034 ORTHO05D000037 2.0e-17 94.0 68 64.7
Sopen07g025790 Solanum pennellii HOM05D000034 ORTHO05D000037 2.0e-17 94.0 68 64.7
Sopen09g033840 Solanum pennellii HOM05D000034 ORTHO05D000037 2.0e-17 94.0 68 64.7
Sopen07g015000 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-17 93.6 71 78.9
Solyc04g014855.1 Solanum lycopersicum HOM05D008774 ORTHO05D000277 2.2e-16 90.5 68 61.8
Sopen07g006940 Solanum pennellii HOM05D008774 ORTHO05D010951 2.2e-16 90.5 88 56.8
Solyc09g150140.1 Solanum lycopersicum HOM05D008774 ORTHO05D010951 4.9e-16 89.4 68 63.2
PGSC0003DMG400006515 Solanum tuberosum HOM05D008774 ORTHO05D010951 1.1e-15 88.2 90 53.3
PGSC0003DMG400016555 Solanum tuberosum HOM05D000034 ORTHO05D000277 1.6e-14 84.3 66 65.2
Solyc05g012010.3 Solanum lycopersicum HOM05D000990 ORTHO05D000810 1.3e-13 81.3 64 60.9
Sopen05g006770 Solanum pennellii HOM05D000990 ORTHO05D000810 1.3e-13 81.3 64 60.9
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.7e-13 80.9 82 43.9
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.0e-13 80.1 82 47.6
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.0e-13 80.1 82 47.6
Solyc03g096005.1 Solanum lycopersicum HOM05D000990 ORTHO05D000810 8.7e-13 78.6 56 66.1
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.5e-12 77.0 82 46.3
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.5e-12 77.0 82 46.3
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.5e-12 77.0 82 43.9
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.6e-12 75.9 82 41.5
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 9.6e-12 75.1 71 45.1
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 9.6e-12 75.1 82 41.5
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.3e-11 74.7 82 46.3
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.6e-11 74.3 72 52.8
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.6e-11 74.3 82 41.5
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.6e-11 74.3 71 49.3
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 2.1e-11 73.9 82 42.7
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.8e-11 73.6 75 52.0
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 2.8e-11 73.6 71 52.1
PGSC0003DMG400028306 Solanum tuberosum HOM05D000990 ORTHO05D000810 2.8e-11 73.6 64 54.7
CAN.G327.2 Capsicum annuum HOM05D001287 ORTHO05D010951 3.6e-11 73.2 75 62.7
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 3.6e-11 73.2 75 44.0
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.6e-11 73.2 71 50.7
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.6e-11 73.2 82 45.1
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.6e-11 73.2 82 42.7
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 4.8e-11 72.8 71 46.5
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 4.8e-11 72.8 71 46.5
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.2e-11 72.4 82 40.2
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 8.1e-11 72.0 154 33.8
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.4e-10 71.2 71 47.9
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.4e-10 71.2 71 47.9
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 2.4e-10 70.5 72 50.0
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.4e-10 70.5 71 46.5
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.4e-10 70.5 71 46.5
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 3.1e-10 70.1 69 46.4
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 4.0e-10 69.7 81 39.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 5.3e-10 69.3 82 37.8
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 6.9e-10 68.9 82 43.9
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.9e-10 68.9 88 39.8
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 6.9e-10 68.9 82 37.8
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 9.0e-10 68.6 116 35.3
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.2e-09 68.2 67 46.3
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 2.6e-09 67.0 68 45.6
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.6e-09 67.0 82 45.1
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.4e-09 66.6 88 38.6
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 3.4e-09 66.6 111 36.0
Sopen07g022940 Solanum pennellii HOM05D008774 ORTHO05D010951 3.4e-09 66.6 65 50.8
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 4.4e-09 66.2 82 37.8
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 7.6e-09 65.5 74 41.9
PGSC0003DMG400024758 Solanum tuberosum HOM05D008774 ORTHO05D010951 7.6e-09 65.5 41 70.7
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.9e-09 65.1 68 48.5
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 9.9e-09 65.1 111 34.2
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 9.9e-09 65.1 82 36.6
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.3e-08 64.7 82 36.6
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.3e-08 64.7 82 36.6
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.7e-08 64.3 66 47.0
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.2e-08 63.9 82 39.0
Sopen00g014170 Solanum pennellii HOM05D008774 ORTHO05D010951 2.2e-08 63.9 29 89.7
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 2.9e-08 63.5 86 38.4
PGSC0003DMG400009232 Solanum tuberosum HOM05D008774 ORTHO05D010951 2.9e-08 63.5 56 51.8
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.9e-08 63.5 82 36.6
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.9e-08 63.5 82 36.6
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.9e-08 63.5 86 41.9
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 4.9e-08 62.8 109 33.0
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 6.4e-08 62.4 80 33.8
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 8.4e-08 62.0 71 42.3
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.1e-07 61.6 80 43.8
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.4e-07 61.2 82 36.6
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-07 61.2 67 43.3
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-07 61.2 67 41.8
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.9e-07 60.8 67 41.8
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.9e-07 60.8 67 41.8
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.9e-07 60.8 76 35.5
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.9e-07 60.8 86 38.4
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.9e-07 60.8 82 36.6
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.9e-07 60.8 80 43.8
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 2.4e-07 60.5 82 35.4
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.4e-07 60.5 82 35.4
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-07 60.5 67 41.8
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 4.2e-07 59.7 71 40.8
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.4e-07 59.3 67 40.3
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 9.3e-07 58.5 82 37.8
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 9.3e-07 58.5 78 39.7
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.2e-06 58.2 80 42.5
Hma1.2p1_0035F.1_g021910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.2e-06 58.2 86 40.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.2e-06 58.2 68 38.2
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.2e-06 58.2 82 36.6
PGSC0003DMG400013554 Solanum tuberosum HOM05D007982 ORTHO05D010951 1.2e-06 58.2 75 80.0
Sopen08g011150 Solanum pennellii HOM05D008774 ORTHO05D010951 1.6e-06 57.8 41 63.4
PGSC0003DMG400030270 Solanum tuberosum HOM05D008774 ORTHO05D010951 2.1e-06 57.4 56 53.6
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.7e-06 57.0 66 42.4
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 4.6e-06 56.2 73 41.1
Hma1.2p1_0127F.1_g059736 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.6e-06 56.2 86 39.5
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.6e-06 56.2 86 39.5
Sopen07g022930 Solanum pennellii HOM05D000004 ORTHO05D000002 6.0e-06 55.8 55 54.5
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 7.9e-06 55.5 66 40.9
vmacro11711 Vaccinium macrocarpon HOM05D009692 ORTHO05D011920 7.9e-06 55.5 63 41.3


User provided reference genes

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