Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 0.0e+00 1452.6 765 100.0
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 0.0e+00 1298.9 758 89.2
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 0.0e+00 1246.9 763 85.8
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 0.0e+00 1242.3 771 85.6
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 0.0e+00 1104.7 581 98.5
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.8e-291 1005.7 762 69.2
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 4.9e-284 981.1 538 94.8
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.6e-279 964.9 763 68.3
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 3.0e-273 945.3 761 65.8
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.6e-271 939.5 763 64.5
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 1.5e-264 916.4 756 62.4
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 3.6e-263 911.8 733 65.2
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.2e-261 906.7 756 61.5
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 3.4e-261 905.2 803 61.3
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.3e-260 903.3 759 61.8
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.2e-258 896.7 773 60.3
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 2.3e-257 892.5 762 61.7
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.3e-255 886.7 756 60.7
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.4e-254 882.5 757 59.6
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 2.4e-254 882.5 757 59.3
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.2e-253 880.2 766 60.1
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 2.0e-253 879.4 756 60.6
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 2.2e-252 875.9 762 61.8
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 2.2e-252 875.9 783 59.5
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 3.8e-252 875.2 756 59.9
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 5.4e-251 871.3 756 59.7
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.6e-250 869.8 773 61.7
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.1e-250 869.4 762 60.4
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 3.0e-249 865.5 764 58.5
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.3e-248 860.9 761 59.8
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 7.3e-248 860.9 761 59.5
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 6.2e-247 857.8 756 59.7
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.4e-246 855.9 758 58.6
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 3.1e-246 855.5 757 60.1
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 9.0e-246 854.0 758 59.5
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 4.5e-245 851.7 761 59.7
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.3e-244 850.1 778 58.2
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 2.2e-244 849.4 759 58.6
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 2.2e-244 849.4 756 61.1
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.9e-243 846.3 761 59.1
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 2.4e-243 845.9 761 61.4
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.2e-242 843.6 744 59.5
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.6e-242 843.2 757 58.0
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 2.1e-242 842.8 709 60.9
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.3e-241 839.3 773 58.0
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.5e-240 836.6 761 58.5
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.1e-238 828.9 758 57.7
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 4.0e-238 828.6 760 57.2
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 9.0e-238 827.4 774 56.8
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.2e-237 827.0 760 56.4
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 2.0e-237 826.2 760 57.6
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 5.8e-237 824.7 760 57.1
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.0e-236 823.9 758 56.7
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.1e-235 820.5 755 56.6
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.9e-235 819.7 761 60.1
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.1e-234 816.2 759 56.9
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 2.1e-234 816.2 761 56.6
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 7.9e-234 814.3 758 56.7
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 7.9e-234 814.3 758 56.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 7.9e-234 814.3 745 60.0
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 6.7e-233 811.2 772 56.7
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 6.7e-233 811.2 715 59.7
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 2.5e-232 809.3 758 57.0
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 4.3e-232 808.5 753 57.0
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 9.6e-232 807.4 756 56.0
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 2.8e-231 805.8 761 57.3
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 3.7e-231 805.4 767 56.1
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 6.9e-230 801.2 732 57.8
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.2e-229 800.4 781 54.7
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 5.8e-229 798.1 781 55.3
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 6.1e-226 788.1 759 55.6
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.9e-225 785.4 785 54.5
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.1e-224 783.9 765 54.9
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 3.3e-224 782.3 776 54.0
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 7.4e-224 781.2 738 61.1
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.8e-223 779.2 776 54.3
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 6.3e-223 778.1 768 54.8
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.4e-219 766.9 680 58.7
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 8.2e-215 751.1 759 53.6
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.0e-213 746.5 802 51.7
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 1.1e-211 740.7 727 54.5
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 5.5e-211 738.4 727 55.0
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.2e-210 737.3 573 65.4
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.4e-209 733.8 757 52.8
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.5e-208 730.3 575 64.5
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 4.4e-208 728.8 725 57.4
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 3.8e-204 715.7 516 71.5
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 7.2e-203 711.4 761 51.2
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.1e-202 708.4 762 51.3
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 9.7e-200 701.0 760 51.1
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.8e-199 699.5 565 63.7
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 8.2e-199 698.0 761 51.4
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-198 697.6 565 63.9
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 9.1e-198 694.5 570 63.7
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.4e-193 680.6 740 50.9
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.4e-190 669.8 641 57.1
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 7.0e-190 668.3 565 61.9
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.7e-188 663.7 706 51.7
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 1.5e-187 660.6 570 60.7
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 7.2e-187 658.3 655 53.4
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.8e-185 653.7 762 50.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.5e-184 650.6 460 73.5
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.6e-180 635.2 526 66.3
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.4e-174 617.5 577 54.6
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.4e-174 615.5 757 48.1
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 2.2e-167 593.6 478 72.0
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 7.5e-160 568.5 759 45.2
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.1e-156 555.8 525 56.6
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.6e-154 550.8 780 40.4
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 4.9e-151 539.3 636 48.0
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 4.9e-143 512.7 290 91.4
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 6.4e-143 512.3 501 52.7
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 3.1e-121 440.3 333 66.4
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 4.2e-118 429.9 436 51.4
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 6.5e-111 406.0 811 31.7
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 8.5e-111 405.6 326 63.8
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.7e-109 400.6 480 47.3
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 8.2e-106 389.0 387 56.8
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 5.3e-105 386.3 558 42.8
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.0e-103 382.1 280 67.9
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.1e-91 342.0 284 63.0
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.3e-87 328.6 733 31.1
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 7.5e-83 312.8 284 59.9
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-81 308.5 230 67.8
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.0e-79 302.4 768 29.4
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 5.5e-78 296.6 345 47.0
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 9.2e-65 252.7 177 71.2
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 2.1e-61 241.5 208 59.1
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.6e-56 225.3 218 52.8
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 3.0e-55 221.1 678 26.4
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.2e-42 178.3 430 32.1
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.4e-41 175.6 186 46.2
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.2e-41 174.5 416 32.0
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 3.5e-40 171.0 137 65.0
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 9.5e-38 162.9 260 41.2
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 1.3e-34 152.5 238 40.3
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 3.3e-30 137.9 187 38.0
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 8.1e-29 133.3 112 63.4
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.4e-25 122.5 100 64.0
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 3.2e-25 121.3 85 71.8
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 9.3e-25 119.8 175 41.7
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 9.6e-22 109.8 124 48.4
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.9e-20 103.6 294 28.2
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-17 95.9 76 63.2
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.6e-16 90.9 218 33.0
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-13 82.4 136 43.4
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 9.9e-11 73.2 105 33.3
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 3.2e-09 68.2 125 36.8
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 1.0e-07 63.2 182 25.8


User provided reference genes

Program Settings