Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g042010.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 8.1e-64 246.9 124 100.0
Sopen04g020530 Solanum pennellii HOM05D002954 ORTHO05D003353 1.3e-61 239.6 124 96.8
Solyc12g019450.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.3e-53 213.0 118 90.7
Sopen04g009500 Solanum pennellii HOM05D022806 ORTHO05D030645 1.3e-53 213.0 110 96.4
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 1.3e-53 213.0 110 96.4
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.8e-50 202.6 160 70.6
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.9e-45 185.3 146 69.2
Solyc07g026873.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 4.8e-32 141.4 73 94.5
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 5.0e-29 131.3 150 50.0
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.1e-25 120.2 157 45.2
Solyc08g015830.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 5.0e-21 104.8 56 92.9
Nitab4.5_0000008g0430 Nicotiana tabacum HOM05D002954 ORTHO05D015034 4.4e-17 91.7 125 43.2
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.4e-17 91.7 130 43.8
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 9.8e-17 90.5 156 34.0
Lalb_Chr22g0361071 Lupinus albus HOM05D002954 ORTHO05D003353 1.3e-16 90.1 138 36.2
TPR.G16180 Trifolium pratense HOM05D002954 ORTHO05D003353 2.4e-15 85.9 132 38.6
Solyc03g013290.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.0e-13 80.5 44 90.9
TPR.G32610 Trifolium pratense HOM05D002954 ORTHO05D003353 1.3e-13 80.1 65 56.9
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 1.9e-12 76.3 103 38.8
Nitab4.5_0003920g0040 Nicotiana tabacum HOM05D002954 ORTHO05D015034 7.2e-12 74.3 137 38.7
Nitab4.5_0001404g0070 Nicotiana tabacum HOM05D002954 ORTHO05D015034 3.6e-11 72.0 117 40.2
Nitab4.5_0006326g0030 Nicotiana tabacum HOM05D002954 ORTHO05D003353 6.1e-11 71.2 120 38.3
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.5e-09 66.6 65 49.2
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 4.4e-09 65.1 65 47.7
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 5.7e-09 64.7 65 47.7
PGSC0003DMG400016266 Solanum tuberosum HOM05D002954 ORTHO05D003353 5.7e-09 64.7 36 91.7
PGSC0003DMG400037966 Solanum tuberosum HOM05D002954 ORTHO05D003353 5.7e-09 64.7 55 58.2
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 7.5e-09 64.3 65 49.2
Solyc05g042160.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 7.5e-09 64.3 43 76.7
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 9.8e-09 63.9 65 40.0
arahy.Tifrunner.gnm1.ann1.35BP8C Arachis hypogaea HOM05D009662 ORTHO05D003353 1.3e-08 63.5 117 31.6
Nitab4.5_0000755g0260 Nicotiana tabacum HOM05D002954 ORTHO05D015034 1.7e-08 63.2 138 33.3
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 3.7e-08 62.0 160 28.8
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 4.9e-08 61.6 65 46.2
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 4.9e-08 61.6 65 47.7
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 4.9e-08 61.6 65 47.7
Lj1g0003177 Lotus japonicus HOM05D002954 ORTHO05D003353 1.1e-07 60.5 65 49.2
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 1.4e-07 60.1 65 49.2
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 1.8e-07 59.7 65 44.6
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.8e-07 59.7 65 46.2
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 3.1e-07 58.9 63 46.0
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 3.1e-07 58.9 63 46.0
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 4.1e-07 58.5 63 46.0
PGSC0003DMG400007737 Solanum tuberosum HOM05D002131 ORTHO05D015034 4.1e-07 58.5 95 40.0
Psat3g100040 Pisum sativum HOM05D002954 ORTHO05D003353 7.0e-07 57.8 65 49.2
CAN.G11.13 Capsicum annuum HOM05D000262 ORTHO05D000300 9.2e-07 57.4 81 38.3
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 1.6e-06 56.6 65 40.0
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 2.0e-06 56.2 65 44.6
Nitab4.5_0002983g0030 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.7e-06 55.8 34 73.5
Nitab4.5_0007501g0010 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.7e-06 55.8 116 36.2
Nitab4.5_0006077g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.5e-06 55.5 47 53.2
Peaxi162Scf01294g00128 Petunia axillaris HOM05D009128 ORTHO05D011389 3.5e-06 55.5 66 47.0
Nitab4.5_0000693g0060 Nicotiana tabacum HOM05D002954 ORTHO05D015034 4.5e-06 55.1 46 58.7
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 5.9e-06 54.7 63 42.9
Nitab4.5_0000062g0230 Nicotiana tabacum HOM05D002954 ORTHO05D015034 5.9e-06 54.7 80 38.8


User provided reference genes

Program Settings