Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.1e-257 890.6 451 100.0
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 6.7e-217 757.3 443 84.7
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 1.5e-216 756.1 462 81.8
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.6e-216 755.4 426 87.1
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.0e-212 743.4 426 86.2
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.5e-208 729.6 375 97.9
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.2e-200 703.4 433 87.1
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 2.1e-181 639.4 445 72.6
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 3.1e-169 599.0 436 67.2
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.4e-161 573.5 433 65.4
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.4e-158 562.8 389 69.7
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.6e-157 560.1 455 65.3
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 9.0e-153 544.3 423 64.3
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 9.3e-150 534.3 438 60.5
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 9.3e-150 534.3 480 58.5
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.2e-149 533.9 448 62.1
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.2e-149 533.9 438 60.0
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 3.5e-149 532.3 385 67.0
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.6e-149 531.9 438 60.5
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 4.6e-149 531.9 450 60.7
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.3e-148 530.4 438 59.8
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 1.5e-147 526.9 435 59.3
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 1.9e-147 526.6 443 59.6
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.3e-146 523.9 440 59.3
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 2.1e-146 523.1 474 58.9
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.4e-145 520.4 467 59.1
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 4.0e-145 518.8 392 65.3
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 6.4e-143 511.5 438 59.4
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 1.1e-142 510.8 390 63.3
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 1.1e-142 510.8 443 60.0
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 4.2e-142 508.8 444 60.1
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 2.1e-141 506.5 439 58.5
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 7.9e-141 504.6 443 59.4
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 1.3e-140 503.8 439 58.1
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.3e-140 503.8 459 56.9
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.3e-140 503.8 390 62.8
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 3.0e-140 502.7 448 57.4
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 3.9e-140 502.3 444 59.2
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 1.3e-138 497.3 386 64.8
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 2.1e-138 496.5 444 57.7
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 8.2e-138 494.6 442 58.8
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 3.1e-137 492.7 440 57.5
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 5.3e-137 491.9 440 56.8
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.0e-137 491.1 440 57.5
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.8e-136 488.4 439 56.9
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.0e-135 487.6 440 57.5
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.7e-135 486.9 460 56.1
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 6.5e-135 485.0 444 56.3
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 8.4e-135 484.6 439 56.3
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 8.4e-135 484.6 451 55.2
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 8.4e-135 484.6 441 56.0
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 2.5e-134 483.0 444 56.5
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 2.1e-133 479.9 446 57.4
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 2.7e-133 479.6 455 56.0
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 4.6e-133 478.8 461 55.5
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 4.6e-133 478.8 461 55.7
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 2.3e-132 476.5 439 56.9
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 3.0e-132 476.1 378 60.8
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 3.9e-132 475.7 429 56.9
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 1.1e-131 474.2 459 54.5
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 1.9e-131 473.4 442 57.2
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 1.9e-131 473.4 426 58.9
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 1.9e-131 473.4 383 60.3
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 3.3e-131 472.6 445 54.8
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 4.3e-131 472.2 428 56.1
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 5.7e-131 471.9 447 55.7
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 1.1e-129 467.6 387 60.7
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 3.1e-129 466.1 453 56.3
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 9.0e-129 464.5 449 53.5
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.2e-128 464.2 424 54.7
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.5e-128 463.8 455 55.4
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 4.5e-128 462.2 506 48.0
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 6.5e-127 458.4 455 54.7
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 1.4e-126 457.2 445 55.7
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 1.4e-126 457.2 445 55.7
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 1.6e-125 453.8 498 49.6
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 2.7e-125 453.0 445 55.1
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 6.1e-125 451.8 445 54.8
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.0e-124 451.1 445 55.3
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 3.9e-124 449.1 445 55.1
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 3.3e-123 446.0 385 56.4
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 5.7e-123 445.3 465 52.0
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 2.8e-122 443.0 443 52.4
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 6.3e-122 441.8 447 52.3
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.4e-121 440.7 386 57.3
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 1.5e-120 437.2 440 51.4
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 2.5e-118 429.9 432 53.0
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 5.5e-118 428.7 435 49.0
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 1.2e-117 427.6 451 52.8
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.5e-115 420.6 389 56.3
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.5e-112 410.6 387 54.0
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 1.1e-110 404.4 405 52.6
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 5.7e-107 392.1 436 47.5
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.3e-106 391.0 459 48.1
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 8.2e-106 388.3 445 47.9
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 8.2e-106 388.3 393 52.4
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 2.4e-105 386.7 436 51.1
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 9.1e-105 384.8 359 54.6
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 2.0e-104 383.6 441 48.1
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 5.9e-104 382.1 453 47.5
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 7.7e-104 381.7 441 47.8
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.7e-103 380.6 457 46.8
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 5.5e-102 375.6 467 46.5
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 2.3e-100 370.2 306 57.2
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 3.7e-98 362.8 432 47.5
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 5.2e-92 342.4 440 44.5
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 2.7e-88 330.1 469 42.2
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 5.9e-88 328.9 433 42.0
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 7.7e-88 328.6 447 43.6
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 5.0e-87 325.9 447 43.6
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 6.6e-87 325.5 360 51.9
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.2e-86 322.8 479 39.0
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 3.6e-85 319.7 460 39.3
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.0e-84 318.2 405 44.9
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 3.0e-84 316.6 457 40.0
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 3.4e-83 313.2 305 53.4
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.1e-81 306.2 440 39.8
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 9.5e-78 295.0 439 39.0
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.1e-77 292.4 463 41.5
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 3.4e-75 286.6 267 55.4
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 6.4e-74 282.3 359 44.0
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.2e-67 261.5 398 36.9
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 8.9e-52 208.8 303 44.6
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 4.9e-50 203.0 414 30.2
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.5e-27 128.3 130 45.4
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 2.9e-26 124.0 157 45.9
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.3e-13 82.0 104 47.1
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 6.5e-10 69.7 63 66.7
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 6.5e-10 69.7 52 73.1
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 9.4e-09 65.9 54 72.2
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 2.7e-08 64.3 56 69.6
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 2.3e-07 61.2 66 59.1
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 2.5e-06 57.8 42 66.7
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 5.7e-06 56.6 54 64.8


User provided reference genes

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